Wall clock time and date at job start Sat Apr 11 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47528 * 2 1 4 4 H 1.09000 * 109.47196 * 54.99948 * 3 2 1 5 5 C 1.50699 * 109.47421 * 174.99998 * 3 2 1 6 6 H 1.08005 * 120.00151 * 119.72261 * 5 3 2 7 7 C 1.37875 * 119.99964 * 299.99898 * 5 3 2 8 8 N 1.31504 * 120.00063 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99804 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46972 * 90.00243 * 9 7 5 11 11 H 1.48504 * 109.46972 * 210.00065 * 9 7 5 12 12 H 1.48501 * 109.47234 * 329.99824 * 9 7 5 13 13 N 1.46503 * 109.47095 * 294.99906 * 3 2 1 14 14 C 1.34775 * 119.99886 * 84.99518 * 13 3 2 15 15 O 1.21288 * 119.99916 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00172 * 180.02562 * 14 13 3 17 17 C 1.50696 * 109.47514 * 180.02562 * 16 14 13 18 18 C 1.38308 * 119.96255 * 269.72795 * 17 16 14 19 19 C 1.38271 * 120.15127 * 179.71924 * 18 17 16 20 20 C 1.38133 * 120.07197 * 0.55120 * 19 18 17 21 21 C 1.38894 * 119.92221 * 359.72385 * 20 19 18 22 22 N 1.39674 * 120.07134 * 179.97438 * 21 20 19 23 23 S 1.65603 * 119.99944 * 313.83330 * 22 21 20 24 24 C 1.81397 * 104.44856 * 298.76538 * 23 22 21 25 25 O 1.42094 * 104.27876 * 54.83867 * 23 22 21 26 26 O 1.42104 * 104.27659 * 182.69343 * 23 22 21 27 27 C 1.38082 * 119.96417 * 89.99639 * 17 16 14 28 28 H 1.09003 * 109.46950 * 300.00223 * 1 2 3 29 29 H 1.08997 * 109.47153 * 59.99832 * 1 2 3 30 30 H 1.08997 * 109.47253 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47029 * 239.99303 * 2 1 3 32 32 H 1.09007 * 109.46964 * 120.00150 * 2 1 3 33 33 H 0.97004 * 119.99957 * 179.97438 * 8 7 5 34 34 H 0.96994 * 120.00257 * 265.00715 * 13 3 2 35 35 H 1.09001 * 109.47205 * 300.00432 * 16 14 13 36 36 H 1.08997 * 109.47546 * 60.00166 * 16 14 13 37 37 H 1.07995 * 119.92623 * 359.97438 * 18 17 16 38 38 H 1.07999 * 119.96608 * 180.27087 * 19 18 17 39 39 H 1.07992 * 120.03460 * 179.69826 * 20 19 18 40 40 H 0.96997 * 119.99766 * 133.83309 * 22 21 20 41 41 H 1.09004 * 109.47447 * 65.01802 * 24 23 22 42 42 H 1.09003 * 109.46997 * 185.01810 * 24 23 22 43 43 H 1.09002 * 109.47459 * 305.01568 * 24 23 22 44 44 H 1.08001 * 120.03648 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1475 1.8847 -0.6545 7 6 4.1433 0.8783 1.2280 8 7 3.4063 0.3374 2.1733 9 14 6.0051 0.8799 1.3811 10 1 6.4429 2.1128 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6132 0.8392 0.0269 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6643 -1.3670 15 8 -0.3392 2.6326 -0.4341 16 6 0.0364 3.3376 -2.6549 17 6 -1.3610 3.8861 -2.5232 18 6 -2.4462 3.1030 -2.8722 19 6 -3.7304 3.6004 -2.7475 20 6 -3.9328 4.8859 -2.2842 21 6 -2.8449 5.6770 -1.9382 22 7 -3.0459 6.9774 -1.4700 23 16 -4.0979 7.9869 -2.2555 24 6 -3.4064 8.1514 -3.9244 25 8 -5.3192 7.2614 -2.2910 26 8 -3.9964 9.2164 -1.5501 27 6 -1.5562 5.1720 -2.0594 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8294 -0.0610 2.9499 34 1 2.2720 2.1230 -1.9978 35 1 0.7278 4.1528 -2.8680 36 1 0.0674 2.6130 -3.4685 37 1 -2.2906 2.0993 -3.2391 38 1 -4.5758 2.9847 -3.0167 39 1 -4.9357 5.2754 -2.1917 40 1 -2.5694 7.2893 -0.6848 41 1 -3.4386 7.1852 -4.4280 42 1 -3.9919 8.8759 -4.4904 43 1 -2.3731 8.4921 -3.8577 44 1 -0.7082 5.7844 -1.7908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358070876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:49 Heat of formation + Delta-G solvation = -87.176117 kcal Electronic energy + Delta-G solvation = -27244.665032 eV Core-core repulsion = 23289.009215 eV Total energy + Delta-G solvation = -3955.655817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.95171 -38.74458 -37.45812 -36.35593 -35.54805 -34.90070 -32.58637 -32.24369 -30.88613 -29.88657 -29.40022 -27.82273 -26.50015 -23.13809 -22.62626 -22.04530 -20.35641 -19.59656 -19.30879 -18.13312 -17.59148 -17.03841 -16.64321 -16.29850 -15.78482 -15.63430 -15.47994 -15.18739 -14.44308 -14.29142 -13.94674 -13.72089 -13.62224 -13.33232 -13.18739 -12.97308 -12.71880 -12.59186 -12.47869 -12.32100 -12.21845 -11.79519 -11.54302 -11.47457 -11.30480 -11.21695 -11.17026 -10.98009 -10.85524 -10.54678 -10.33776 -10.18754 -9.64186 -9.15726 -9.05011 -8.74698 -8.51761 -8.41200 -7.82950 -6.14599 -4.24245 -0.18696 1.26106 1.33989 2.24583 3.22040 3.29026 3.30289 3.36571 3.39754 3.58299 3.81999 4.18860 4.33631 4.40749 4.56609 4.72676 4.80627 4.90521 5.16583 5.17573 5.26056 5.28901 5.40857 5.57795 5.59067 5.65834 5.87981 6.04295 6.25141 6.38011 6.44304 6.46198 6.57765 6.64173 6.65221 7.00138 7.02315 7.19004 7.35818 7.44796 7.59962 7.71834 7.88485 8.16647 8.65829 8.76076 9.13652 9.43566 10.90632 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020134 B = 0.002356 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.363905 B =11882.780632 C =12519.530784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.501 3.499 15 O -0.539 6.539 16 C -0.110 4.110 17 C -0.036 4.036 18 C -0.110 4.110 19 C -0.098 4.098 20 C -0.157 4.157 21 C 0.133 3.867 22 N -1.056 6.056 23 S 2.611 3.389 24 C -0.668 4.668 25 O -0.950 6.950 26 O -0.957 6.957 27 C -0.115 4.115 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.021 0.979 31 H 0.030 0.970 32 H 0.098 0.902 33 H 0.264 0.736 34 H 0.388 0.612 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.154 0.846 40 H 0.426 0.574 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.557 11.378 -15.194 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.358 5.358 14 C 0.285 3.715 15 O -0.418 6.418 16 C -0.151 4.151 17 C -0.037 4.037 18 C -0.129 4.129 19 C -0.116 4.116 20 C -0.178 4.178 21 C 0.038 3.962 22 N -0.807 5.807 23 S 2.704 3.296 24 C -0.819 4.819 25 O -0.940 6.940 26 O -0.947 6.947 27 C -0.137 4.137 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.220 0.780 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.171 0.829 40 H 0.264 0.736 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.970 11.653 -14.070 22.405 hybrid contribution 2.185 -0.124 -0.309 2.211 sum -10.784 11.530 -14.380 21.354 Atomic orbital electron populations 1.21828 0.98307 0.97965 1.01240 1.21931 0.92620 0.99871 1.02201 1.18757 0.94094 0.89142 0.81065 0.93394 1.21233 0.90770 1.39155 1.06151 0.92143 1.24888 0.98563 0.94803 0.95441 1.69891 1.35135 1.37548 1.09331 0.86471 0.84915 0.77657 0.78170 1.20591 1.21078 1.19875 1.46502 1.14627 1.56178 1.18534 1.20176 0.82864 0.79654 0.88821 1.90708 1.51255 1.59424 1.40368 1.20798 0.94288 1.01593 0.98375 1.19217 0.94420 0.93077 0.96994 1.21091 0.92164 0.99463 1.00174 1.20994 0.97013 0.94883 0.98726 1.21828 0.99269 0.94462 1.02214 1.17290 0.93658 0.84520 1.00714 1.53231 1.64568 1.21504 1.41445 1.05005 0.74422 0.73174 0.76979 1.30459 1.14389 1.12018 1.24998 1.93581 1.42160 1.71537 1.86702 1.93632 1.86437 1.44211 1.70409 1.20972 0.95652 0.96315 1.00782 0.93210 0.94252 0.95947 0.95110 0.88384 0.92552 0.78040 0.88481 0.88380 0.85858 0.85438 0.82903 0.73616 0.84974 0.85130 0.85013 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.52 37.16 0.32 -2.65 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.58 2.24 -69.08 -0.15 6.42 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.97 16 5 C -0.53 -13.71 8.73 -34.44 -0.30 -14.01 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.38 11.29 55.43 0.63 -23.75 16 9 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 N -0.71 -13.66 5.02 -54.93 -0.28 -13.93 16 14 C 0.50 8.99 6.39 -10.99 -0.07 8.92 16 15 O -0.54 -11.84 13.17 5.55 0.07 -11.76 16 16 C -0.11 -1.35 5.83 -29.04 -0.17 -1.52 16 17 C -0.04 -0.45 4.37 -104.66 -0.46 -0.91 16 18 C -0.11 -1.31 9.70 -39.54 -0.38 -1.69 16 19 C -0.10 -1.08 10.04 -39.61 -0.40 -1.48 16 20 C -0.16 -1.81 9.24 -39.38 -0.36 -2.17 16 21 C 0.13 1.49 6.02 -83.79 -0.50 0.98 16 22 N -1.06 -9.56 5.67 32.41 0.18 -9.38 16 23 S 2.61 21.83 6.00 -107.50 -0.64 21.18 16 24 C -0.67 -3.25 10.74 101.05 1.09 -2.16 16 25 O -0.95 -10.76 15.18 -57.54 -0.87 -11.63 16 26 O -0.96 -10.93 18.08 -57.54 -1.04 -11.97 16 27 C -0.12 -1.37 9.62 -39.38 -0.38 -1.75 16 28 H 0.05 1.17 7.85 -51.93 -0.41 0.77 16 29 H 0.04 0.82 5.65 -51.93 -0.29 0.52 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.39 6.35 8.54 -40.82 -0.35 6.00 16 35 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.15 1.76 5.64 -52.49 -0.30 1.46 16 40 H 0.43 3.39 8.92 -34.48 -0.31 3.08 16 41 H 0.13 0.59 8.14 -51.92 -0.42 0.16 16 42 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 43 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 374.66 15.07 5.65 5.65 Total: -1.00 -35.10 374.66 -9.46 -44.56 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.12 Total: 9.39 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -2.02 Total: -13.54 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.53 Total: -47.06 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -1.84 Total: -35.37 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 21.83 SS G_CDS: -0.64 Total: 21.18 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.10 -9.46 -44.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358070876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.618 kcal (2) G-P(sol) polarization free energy of solvation -35.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds