Wall clock time and date at job start Sat Apr 11 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47528 * 2 1 4 4 H 1.09000 * 109.47196 * 54.99948 * 3 2 1 5 5 C 1.50699 * 109.47421 * 174.99998 * 3 2 1 6 6 H 1.08005 * 120.00151 * 119.72261 * 5 3 2 7 7 C 1.37875 * 119.99964 * 299.99898 * 5 3 2 8 8 N 1.31504 * 120.00063 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99804 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46972 * 90.00243 * 9 7 5 11 11 H 1.48504 * 109.46972 * 210.00065 * 9 7 5 12 12 H 1.48501 * 109.47234 * 329.99824 * 9 7 5 13 13 N 1.46503 * 109.47095 * 294.99906 * 3 2 1 14 14 C 1.34775 * 119.99886 * 84.99518 * 13 3 2 15 15 O 1.21288 * 119.99916 * 0.02562 * 14 13 3 16 16 C 1.50698 * 120.00172 * 180.02562 * 14 13 3 17 17 C 1.50696 * 109.47514 * 180.02562 * 16 14 13 18 18 C 1.38308 * 119.96255 * 269.72795 * 17 16 14 19 19 C 1.38271 * 120.15127 * 179.71924 * 18 17 16 20 20 C 1.38133 * 120.07197 * 0.55120 * 19 18 17 21 21 C 1.38894 * 119.92221 * 359.72385 * 20 19 18 22 22 N 1.39674 * 120.07134 * 179.97438 * 21 20 19 23 23 S 1.65603 * 119.99944 * 313.83330 * 22 21 20 24 24 C 1.81397 * 104.44856 * 298.76538 * 23 22 21 25 25 O 1.42094 * 104.27876 * 54.83867 * 23 22 21 26 26 O 1.42104 * 104.27659 * 182.69343 * 23 22 21 27 27 C 1.38082 * 119.96417 * 89.99639 * 17 16 14 28 28 H 1.09003 * 109.46950 * 300.00223 * 1 2 3 29 29 H 1.08997 * 109.47153 * 59.99832 * 1 2 3 30 30 H 1.08997 * 109.47253 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47029 * 239.99303 * 2 1 3 32 32 H 1.09007 * 109.46964 * 120.00150 * 2 1 3 33 33 H 0.97004 * 119.99957 * 179.97438 * 8 7 5 34 34 H 0.96994 * 120.00257 * 265.00715 * 13 3 2 35 35 H 1.09001 * 109.47205 * 300.00432 * 16 14 13 36 36 H 1.08997 * 109.47546 * 60.00166 * 16 14 13 37 37 H 1.07995 * 119.92623 * 359.97438 * 18 17 16 38 38 H 1.07999 * 119.96608 * 180.27087 * 19 18 17 39 39 H 1.07992 * 120.03460 * 179.69826 * 20 19 18 40 40 H 0.96997 * 119.99766 * 133.83309 * 22 21 20 41 41 H 1.09004 * 109.47447 * 65.01802 * 24 23 22 42 42 H 1.09003 * 109.46997 * 185.01810 * 24 23 22 43 43 H 1.09002 * 109.47459 * 305.01568 * 24 23 22 44 44 H 1.08001 * 120.03648 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1475 1.8847 -0.6545 7 6 4.1433 0.8783 1.2280 8 7 3.4063 0.3374 2.1733 9 14 6.0051 0.8799 1.3811 10 1 6.4429 2.1128 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6132 0.8392 0.0269 13 7 1.6526 2.0974 -1.2518 14 6 0.4353 2.6643 -1.3670 15 8 -0.3392 2.6326 -0.4341 16 6 0.0364 3.3376 -2.6549 17 6 -1.3610 3.8861 -2.5232 18 6 -2.4462 3.1030 -2.8722 19 6 -3.7304 3.6004 -2.7475 20 6 -3.9328 4.8859 -2.2842 21 6 -2.8449 5.6770 -1.9382 22 7 -3.0459 6.9774 -1.4700 23 16 -4.0979 7.9869 -2.2555 24 6 -3.4064 8.1514 -3.9244 25 8 -5.3192 7.2614 -2.2910 26 8 -3.9964 9.2164 -1.5501 27 6 -1.5562 5.1720 -2.0594 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8294 -0.0610 2.9499 34 1 2.2720 2.1230 -1.9978 35 1 0.7278 4.1528 -2.8680 36 1 0.0674 2.6130 -3.4685 37 1 -2.2906 2.0993 -3.2391 38 1 -4.5758 2.9847 -3.0167 39 1 -4.9357 5.2754 -2.1917 40 1 -2.5694 7.2893 -0.6848 41 1 -3.4386 7.1852 -4.4280 42 1 -3.9919 8.8759 -4.4904 43 1 -2.3731 8.4921 -3.8577 44 1 -0.7082 5.7844 -1.7908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358070876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:48 Heat of formation + Delta-G solvation = -113.355857 kcal Electronic energy + Delta-G solvation = -27245.800270 eV Core-core repulsion = 23289.009215 eV Total energy + Delta-G solvation = -3956.791056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.03026 -40.02992 -38.24683 -37.14568 -36.95221 -36.08018 -34.24788 -33.50871 -32.54169 -30.33040 -30.27399 -29.26517 -27.97143 -24.97399 -23.47823 -23.12001 -21.85146 -20.99947 -20.34925 -18.97131 -18.80667 -18.23693 -17.35423 -17.33467 -17.19917 -17.03487 -16.53845 -16.35597 -15.94117 -15.75150 -14.86617 -14.69973 -14.57511 -14.15083 -14.11898 -14.04241 -13.95710 -13.84585 -13.49138 -13.30657 -13.21993 -13.17681 -13.08507 -12.87569 -12.75808 -12.66151 -12.28085 -12.16631 -12.13805 -12.02750 -11.90787 -11.54196 -11.34040 -11.01557 -10.62317 -10.46778 -9.69804 -9.53026 -9.27380 -8.13852 -6.30897 -0.82145 0.37079 0.46843 1.45630 1.46089 1.56328 1.56536 2.00167 2.38237 2.59999 2.75656 3.02082 3.16083 3.19585 3.77052 3.90810 4.02238 4.10591 4.19816 4.30043 4.35827 4.44274 4.52525 4.55169 4.61672 4.71755 4.80501 4.81644 4.91224 5.07727 5.10214 5.16922 5.30844 5.41137 5.48319 5.59281 5.60436 5.69777 5.70184 5.84672 5.87329 5.99285 6.17565 6.21775 6.79248 7.11576 7.37484 7.72827 8.91207 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020134 B = 0.002356 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.363905 B =11882.780632 C =12519.530784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.006 1.006 5 C -0.545 4.545 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.967 3.033 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.259 1.259 13 N -0.708 5.708 14 C 0.497 3.503 15 O -0.584 6.584 16 C -0.095 4.095 17 C -0.052 4.052 18 C -0.121 4.121 19 C -0.100 4.100 20 C -0.169 4.169 21 C 0.135 3.865 22 N -1.057 6.057 23 S 2.615 3.385 24 C -0.647 4.647 25 O -0.986 6.986 26 O -0.992 6.992 27 C -0.126 4.126 28 H 0.020 0.980 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.263 0.737 34 H 0.404 0.596 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.429 0.571 41 H 0.143 0.857 42 H 0.154 0.846 43 H 0.151 0.849 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.578 11.875 -18.110 24.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.012 0.988 5 C -0.583 4.583 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.792 3.208 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.183 1.183 13 N -0.358 5.358 14 C 0.284 3.716 15 O -0.464 6.464 16 C -0.135 4.135 17 C -0.053 4.053 18 C -0.139 4.139 19 C -0.119 4.119 20 C -0.190 4.190 21 C 0.039 3.961 22 N -0.807 5.807 23 S 2.713 3.287 24 C -0.801 4.801 25 O -0.976 6.976 26 O -0.982 6.982 27 C -0.148 4.148 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.239 0.761 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.267 0.733 41 H 0.162 0.838 42 H 0.173 0.827 43 H 0.170 0.830 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.999 12.162 -16.996 24.099 hybrid contribution 1.816 -0.224 0.568 1.916 sum -10.183 11.938 -16.428 22.717 Atomic orbital electron populations 1.21658 0.96936 0.98921 1.00320 1.21776 0.93744 0.99369 1.01108 1.18277 0.93345 0.89048 0.81733 0.98772 1.21619 0.91658 1.38652 1.06405 0.90891 1.25767 1.03122 0.94533 0.95204 1.70056 1.37001 1.38558 1.09906 0.85417 0.79429 0.77273 0.78633 1.20579 1.21256 1.18263 1.46257 1.15844 1.56323 1.17366 1.21161 0.81541 0.78579 0.90312 1.90698 1.52339 1.60803 1.42594 1.20762 0.94665 1.02672 0.95394 1.19374 0.94720 0.93513 0.97743 1.21313 0.92290 1.00000 1.00339 1.21262 0.97621 0.94888 0.98096 1.21953 0.99326 0.94951 1.02723 1.17334 0.93468 0.85060 1.00256 1.53178 1.64379 1.21077 1.42072 1.04695 0.73797 0.71946 0.78256 1.30273 1.15492 1.13614 1.20700 1.93531 1.44383 1.71966 1.87702 1.93586 1.86837 1.45319 1.72489 1.21157 0.96202 0.96548 1.00863 0.96048 0.93165 0.93922 0.93969 0.91496 0.92761 0.76080 0.85605 0.85253 0.84694 0.83487 0.83220 0.73282 0.83823 0.82748 0.83020 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.52 71.98 0.61 -4.70 16 2 C -0.12 -5.80 5.45 30.59 0.17 -5.63 16 3 C 0.28 13.78 2.24 44.24 0.10 13.88 16 4 H -0.01 -0.34 7.58 -2.39 -0.02 -0.35 16 5 C -0.55 -27.89 8.73 25.60 0.22 -27.66 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 7 C 0.01 0.72 5.29 84.66 0.45 1.17 16 8 N -0.92 -52.07 11.29 21.44 0.24 -51.83 16 9 Si 0.97 41.27 29.54 68.60 2.03 43.30 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 13 N -0.71 -26.51 5.02 -446.10 -2.24 -28.75 16 14 C 0.50 17.25 6.39 87.66 0.56 17.81 16 15 O -0.58 -25.82 13.17 -3.05 -0.04 -25.87 16 16 C -0.10 -2.06 5.83 29.10 0.17 -1.89 16 17 C -0.05 -1.21 4.37 -19.89 -0.09 -1.29 16 18 C -0.12 -2.64 9.70 22.29 0.22 -2.43 16 19 C -0.10 -2.08 10.04 22.25 0.22 -1.86 16 20 C -0.17 -3.76 9.24 22.40 0.21 -3.55 16 21 C 0.13 2.87 6.02 38.22 0.23 3.10 16 22 N -1.06 -18.61 5.67 -51.37 -0.29 -18.90 16 23 S 2.61 42.06 6.00 -56.49 -0.34 41.72 16 24 C -0.65 -4.37 10.74 113.37 1.22 -3.15 16 25 O -0.99 -22.37 15.18 -127.65 -1.94 -24.31 16 26 O -0.99 -22.62 18.08 -127.65 -2.31 -24.93 16 27 C -0.13 -2.79 9.62 22.40 0.22 -2.58 16 28 H 0.02 1.02 7.85 -2.39 -0.02 1.00 16 29 H 0.05 2.06 5.65 -2.39 -0.01 2.05 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 3.65 5.95 -2.38 -0.01 3.64 16 33 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.40 12.34 8.54 -92.71 -0.79 11.55 16 35 H 0.13 2.02 8.08 -2.39 -0.02 2.00 16 36 H 0.13 2.02 8.08 -2.39 -0.02 2.00 16 37 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 38 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 39 H 0.15 3.43 5.64 -2.91 -0.02 3.41 16 40 H 0.43 6.84 8.92 -96.74 -0.86 5.98 16 41 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.15 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -78.80 374.66 -1.00 -79.79 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.61 Total: 28.56 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 4.50 Total: -18.78 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -2.29 Total: -99.48 kcal Atomic # 8 Polarization: -70.82 SS G_CDS: -4.29 Total: -75.10 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 42.06 SS G_CDS: -0.34 Total: 41.72 kcal Total: -78.80 -1.00 -79.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358070876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.564 kcal (2) G-P(sol) polarization free energy of solvation -78.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds