Wall clock time and date at job start Sat Apr 11 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47395 * 2 1 4 4 H 1.08996 * 109.47239 * 305.05513 * 3 2 1 5 5 C 1.50699 * 109.47241 * 185.04820 * 3 2 1 6 6 H 1.07994 * 120.00294 * 239.72597 * 5 3 2 7 7 C 1.37877 * 119.99428 * 60.00625 * 5 3 2 8 8 N 1.31508 * 120.00380 * 359.72175 * 7 5 3 9 9 Si 1.86806 * 119.99698 * 179.72136 * 7 5 3 10 10 H 1.48507 * 109.47099 * 60.00245 * 9 7 5 11 11 H 1.48500 * 109.47099 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47529 * 299.99973 * 9 7 5 13 13 N 1.46500 * 109.46656 * 65.05119 * 3 2 1 14 14 S 1.65604 * 119.99992 * 214.05013 * 13 3 2 15 15 O 1.42102 * 106.40211 * 179.51262 * 14 13 3 16 16 O 1.42108 * 106.39927 * 312.42847 * 14 13 3 17 17 C 1.76190 * 107.21722 * 65.96960 * 14 13 3 18 18 C 1.38283 * 119.92901 * 264.64711 * 17 14 13 19 19 C 1.38115 * 120.06887 * 179.76707 * 18 17 14 20 20 C 1.38872 * 119.93017 * 0.53266 * 19 18 17 21 21 N 1.39926 * 120.07208 * 179.74751 * 20 19 18 22 22 C 1.46503 * 120.00053 * 187.34323 * 21 20 19 23 23 C 1.34773 * 120.00228 * 7.34055 * 21 20 19 24 24 C 1.50698 * 120.00361 * 186.06264 * 23 21 20 25 25 O 1.21285 * 119.99814 * 6.06341 * 23 21 20 26 26 C 1.38872 * 119.85634 * 359.72193 * 20 19 18 27 27 C 1.38106 * 119.93339 * 0.02562 * 26 20 19 28 28 H 1.09007 * 109.46651 * 304.95243 * 1 2 3 29 29 H 1.08991 * 109.47374 * 64.95231 * 1 2 3 30 30 H 1.09001 * 109.47094 * 184.95540 * 1 2 3 31 31 H 1.09007 * 109.46811 * 240.00040 * 2 1 3 32 32 H 1.08999 * 109.47286 * 120.00993 * 2 1 3 33 33 H 0.97002 * 120.00157 * 180.02562 * 8 7 5 34 34 H 0.97007 * 120.00200 * 34.05559 * 13 3 2 35 35 H 1.07998 * 119.96609 * 0.02562 * 18 17 14 36 36 H 1.08002 * 120.03629 * 180.25794 * 19 18 17 37 37 H 1.09001 * 109.46817 * 95.05450 * 22 21 20 38 38 H 1.08995 * 109.47058 * 215.05473 * 22 21 20 39 39 H 1.08997 * 109.47079 * 335.05895 * 22 21 20 40 40 H 1.08993 * 109.47330 * 94.65334 * 24 23 21 41 41 H 1.09004 * 109.46815 * 214.65956 * 24 23 21 42 42 H 1.09000 * 109.46547 * 334.65171 * 24 23 21 43 43 H 1.08010 * 120.03646 * 179.97438 * 26 20 19 44 44 H 1.07999 * 119.96928 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6047 1.9818 -0.8412 5 6 3.5418 1.4442 -0.1250 6 1 4.1476 1.8925 0.6486 7 6 4.1422 0.8787 -1.2299 8 7 3.4046 0.3329 -2.1720 9 14 6.0035 0.8878 -1.3887 10 1 6.6017 0.1576 -0.2422 11 1 6.3953 0.2226 -2.6572 12 1 6.4932 2.2897 -1.3925 13 7 1.6535 2.0970 1.2524 14 16 1.2796 3.7102 1.2624 15 8 0.9403 4.0351 2.6036 16 8 2.3138 4.3663 0.5416 17 6 -0.1919 3.9104 0.3144 18 6 -0.1100 4.2570 -1.0218 19 6 -1.2615 4.4100 -1.7689 20 6 -2.5029 4.2262 -1.1741 21 7 -3.6715 4.3856 -1.9269 22 6 -4.9788 4.3507 -1.2665 23 6 -3.5947 4.5712 -3.2596 24 6 -4.8399 4.8789 -4.0507 25 8 -2.5232 4.4907 -3.8223 26 6 -2.5819 3.8833 0.1693 27 6 -1.4266 3.7267 0.9096 28 1 -0.3633 0.5888 0.8424 29 1 -0.3633 0.4350 -0.9309 30 1 -0.3633 -1.0238 0.0888 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 3.8270 -0.0653 -2.9491 34 1 1.6167 1.5854 2.0758 35 1 0.8556 4.4041 -1.4827 36 1 -1.1968 4.6766 -2.8135 37 1 -5.2980 5.3678 -1.0389 38 1 -5.7072 3.8805 -1.9271 39 1 -4.9037 3.7781 -0.3421 40 1 -4.9416 5.9582 -4.1630 41 1 -4.7685 4.4162 -5.0351 42 1 -5.7101 4.4844 -3.5262 43 1 -3.5458 3.7401 0.6349 44 1 -1.4873 3.4597 1.9543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358180475.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:52 Heat of formation + Delta-G solvation = -63.054639 kcal Electronic energy + Delta-G solvation = -28375.305268 eV Core-core repulsion = 24420.695437 eV Total energy + Delta-G solvation = -3954.609831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05920 -38.44413 -36.54212 -36.06261 -35.83120 -35.07754 -32.10249 -31.59929 -30.91804 -30.55549 -29.07175 -27.41335 -26.55004 -23.43874 -22.98455 -22.37779 -20.12837 -20.06204 -18.94801 -17.83763 -17.55606 -16.94077 -16.74979 -16.33570 -16.12054 -15.34203 -14.90747 -14.64363 -14.29111 -14.21254 -13.89808 -13.66490 -13.35221 -13.27133 -13.11325 -13.01226 -12.81767 -12.77873 -12.52666 -12.26400 -11.83104 -11.57787 -11.49155 -11.32677 -11.16233 -11.12934 -10.87013 -10.71132 -10.57993 -10.50765 -10.15833 -9.78604 -9.75145 -9.65797 -9.50189 -8.86968 -8.35751 -8.25607 -8.14320 -5.99546 -4.05966 0.87560 1.24695 1.49755 2.23596 2.43629 3.38464 3.41693 3.47310 3.62384 3.99424 4.06473 4.44574 4.46742 4.52392 4.59977 4.81811 4.83568 4.96654 5.01008 5.13752 5.16084 5.30153 5.39518 5.43748 5.48593 5.67051 6.00940 6.11570 6.14308 6.20896 6.21004 6.36498 6.43928 6.47716 6.56476 6.82757 6.95865 6.99548 7.11397 7.16704 7.63967 7.70516 7.71698 7.95884 8.17299 8.31593 8.96843 9.59825 11.04722 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.003833 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.853403 B = 7303.960041 C = 8176.392570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.282 3.718 4 H 0.042 0.958 5 C -0.520 4.520 6 H 0.064 0.936 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.274 1.274 13 N -1.101 6.101 14 S 2.691 3.309 15 O -0.989 6.989 16 O -0.948 6.948 17 C -0.691 4.691 18 C 0.013 3.987 19 C -0.183 4.183 20 C 0.194 3.806 21 N -0.559 5.559 22 C 0.063 3.937 23 C 0.508 3.492 24 C -0.174 4.174 25 O -0.508 6.508 26 C -0.188 4.188 27 C 0.004 3.996 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.034 0.966 31 H 0.106 0.894 32 H 0.040 0.960 33 H 0.263 0.737 34 H 0.405 0.595 35 H 0.147 0.853 36 H 0.179 0.821 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.131 0.869 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.800 6.092 0.775 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C 0.178 3.822 4 H 0.060 0.940 5 C -0.559 4.559 6 H 0.082 0.918 7 C -0.138 4.138 8 N -0.532 5.532 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.861 5.861 14 S 2.779 3.221 15 O -0.979 6.979 16 O -0.938 6.938 17 C -0.777 4.777 18 C -0.007 4.007 19 C -0.203 4.203 20 C 0.099 3.901 21 N -0.282 5.282 22 C -0.079 4.079 23 C 0.299 3.701 24 C -0.233 4.233 25 O -0.383 6.383 26 C -0.209 4.209 27 C -0.016 4.016 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.238 0.762 35 H 0.165 0.835 36 H 0.195 0.805 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.104 0.896 43 H 0.149 0.851 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.855 6.746 0.430 20.974 hybrid contribution 0.125 -0.586 -0.130 0.613 sum -19.730 6.160 0.300 20.672 Atomic orbital electron populations 1.21828 0.99100 0.99254 1.00280 1.21870 0.91866 0.99489 1.03315 1.18532 0.94704 0.90150 0.78849 0.94041 1.21498 0.91310 1.37200 1.05913 0.91823 1.24886 0.98432 0.95037 0.95455 1.69828 1.35092 1.38595 1.09680 0.86585 0.85411 0.78485 0.77143 1.20294 1.21343 1.19965 1.55533 1.83494 1.28740 1.18379 1.01867 0.73801 0.73563 0.72910 1.93503 1.85362 1.83665 1.35366 1.93598 1.52819 1.73498 1.73909 1.31206 1.19250 1.18006 1.09275 1.21083 0.99744 0.88835 0.91060 1.22496 0.89995 1.03789 1.04043 1.18208 0.85905 0.94943 0.91014 1.45627 1.06535 1.68475 1.07605 1.22137 0.82917 1.03263 0.99552 1.21119 0.91876 0.75953 0.81197 1.22024 0.95061 1.04782 1.01440 1.90527 1.29921 1.48619 1.69251 1.20816 0.99247 1.08073 0.92813 1.20583 0.90419 0.91514 0.99085 0.94291 0.93826 0.94675 0.87587 0.94073 0.92709 0.76235 0.83506 0.80452 0.91187 0.89818 0.89417 0.88203 0.88275 0.89639 0.85127 0.84438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.86 37.16 0.37 -2.39 16 2 C -0.13 -2.79 5.36 -26.73 -0.14 -2.94 16 3 C 0.28 6.73 2.14 -69.09 -0.15 6.58 16 4 H 0.04 1.07 7.71 -51.93 -0.40 0.67 16 5 C -0.52 -14.16 8.84 -34.44 -0.30 -14.46 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -24.85 11.28 55.43 0.63 -24.23 16 9 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 13 N -1.10 -22.34 4.84 -5.89 -0.03 -22.37 16 14 S 2.69 53.97 5.65 -107.50 -0.61 53.36 16 15 O -0.99 -20.14 17.41 -57.17 -1.00 -21.14 16 16 O -0.95 -22.52 16.89 -57.17 -0.97 -23.49 16 17 C -0.69 -12.33 5.87 -39.55 -0.23 -12.56 16 18 C 0.01 0.23 9.32 -39.61 -0.37 -0.14 16 19 C -0.18 -3.09 8.98 -39.39 -0.35 -3.45 16 20 C 0.19 2.74 6.49 -83.69 -0.54 2.20 16 21 N -0.56 -5.90 3.10 -120.83 -0.37 -6.27 16 22 C 0.06 0.34 9.73 59.85 0.58 0.92 16 23 C 0.51 5.62 7.68 -10.99 -0.08 5.53 16 24 C -0.17 -0.98 9.89 36.00 0.36 -0.62 16 25 O -0.51 -7.89 13.61 5.55 0.08 -7.82 16 26 C -0.19 -2.42 9.28 -39.40 -0.37 -2.79 16 27 C 0.00 0.06 9.51 -39.61 -0.38 -0.32 16 28 H 0.04 0.66 7.62 -51.93 -0.40 0.26 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.11 2.66 5.94 -51.93 -0.31 2.35 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.40 7.18 8.83 -34.47 -0.30 6.88 16 35 H 0.15 2.81 7.50 -52.49 -0.39 2.41 16 36 H 0.18 3.12 4.72 -55.21 -0.26 2.86 16 37 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.24 6.19 -51.93 -0.32 -0.08 16 39 H 0.09 0.43 5.73 -51.93 -0.30 0.13 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.25 5.76 -51.93 -0.30 -0.05 16 43 H 0.13 1.17 5.93 -52.48 -0.31 0.86 16 44 H 0.14 1.79 7.73 -52.49 -0.41 1.38 16 LS Contribution 370.52 15.07 5.58 5.58 Total: -1.00 -35.52 370.52 -9.20 -44.71 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.78 Total: 7.79 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -1.71 Total: -22.78 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.22 Total: -52.87 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -1.89 Total: -52.45 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 53.97 SS G_CDS: -0.61 Total: 53.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.52 -9.20 -44.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358180475.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.340 kcal (2) G-P(sol) polarization free energy of solvation -35.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds