Wall clock time and date at job start Sat Apr 11 2020 05:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47222 * 31.90330 * 3 2 1 5 5 C 1.36940 * 120.00192 * 274.83036 * 4 3 2 6 6 H 1.07990 * 120.00276 * 146.41661 * 5 4 3 7 7 C 1.38811 * 119.99564 * 326.40956 * 5 4 3 8 8 N 1.31622 * 119.99655 * 156.61443 * 7 5 4 9 9 Si 1.86803 * 120.00354 * 336.61923 * 7 5 4 10 10 H 1.48492 * 109.47228 * 95.44659 * 9 7 5 11 11 H 1.48502 * 109.47094 * 215.44753 * 9 7 5 12 12 H 1.48498 * 109.46727 * 335.44561 * 9 7 5 13 13 S 1.65611 * 120.00217 * 94.82991 * 4 3 2 14 14 O 1.42098 * 104.27282 * 333.92674 * 13 4 3 15 15 O 1.42093 * 104.27761 * 206.07003 * 13 4 3 16 16 C 1.81402 * 104.44944 * 89.99948 * 13 4 3 17 17 C 1.53492 * 114.20388 * 180.02562 * 16 13 4 18 18 N 1.47069 * 87.98249 * 220.14583 * 17 16 13 19 19 C 1.34776 * 136.06141 * 207.08325 * 18 17 16 20 20 O 1.21284 * 119.99598 * 359.97438 * 19 18 17 21 21 C 1.50703 * 120.00374 * 180.02562 * 19 18 17 22 22 C 1.53877 * 110.03184 * 180.02562 * 21 19 18 23 23 C 1.54266 * 106.59645 * 240.71410 * 22 21 19 24 24 C 1.54887 * 104.19664 * 336.39250 * 23 22 21 25 25 C 1.54266 * 110.03313 * 62.83464 * 21 19 18 26 26 C 1.47069 * 87.88797 * 27.34103 * 18 17 16 27 27 H 4.40636 * 5.51282 * 180.02562 * 4 1 2 28 28 H 1.09001 * 109.47591 * 271.89951 * 3 2 1 29 29 H 1.09004 * 109.46994 * 151.90286 * 3 2 1 30 30 H 0.97001 * 120.00130 * 180.02562 * 8 7 5 31 31 H 1.09006 * 113.28214 * 313.06920 * 16 13 4 32 32 H 1.08997 * 113.47120 * 105.37214 * 17 16 13 33 33 H 1.09003 * 113.46734 * 334.92280 * 17 16 13 34 34 H 1.08994 * 110.05330 * 301.41508 * 21 19 18 35 35 H 1.09001 * 110.03019 * 359.97438 * 22 21 19 36 36 H 1.09000 * 110.03245 * 121.43007 * 22 21 19 37 37 H 1.09003 * 110.48535 * 95.07160 * 23 22 21 38 38 H 1.08999 * 110.48274 * 217.71144 * 23 22 21 39 39 H 1.08998 * 110.75365 * 279.62766 * 24 23 22 40 40 H 1.09004 * 110.91104 * 156.33395 * 24 23 22 41 41 H 1.09000 * 110.48278 * 261.57512 * 25 21 19 42 42 H 1.09000 * 110.48316 * 24.21397 * 25 21 19 43 43 H 1.09006 * 113.46764 * 87.43538 * 26 18 17 44 44 H 1.08999 * 113.47134 * 217.87972 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1717 -0.7299 5 6 3.2695 -2.3724 -0.0855 6 1 3.0927 -3.2945 -0.6191 7 6 3.6335 -2.4043 1.2537 8 7 3.3302 -3.4500 1.9933 9 14 4.5536 -0.9633 2.0062 10 1 3.5873 -0.0494 2.6664 11 1 5.5249 -1.4663 3.0106 12 1 5.2802 -0.2287 0.9396 13 16 3.5247 -1.0449 -2.3345 14 8 2.7301 0.0357 -2.8037 15 8 3.3473 -2.3597 -2.8432 16 6 5.2814 -0.5923 -2.3391 17 6 5.8816 -0.4139 -3.7405 18 7 7.0931 -1.0888 -3.2508 19 6 8.4045 -1.0750 -3.5614 20 8 8.8081 -0.3632 -4.4566 21 6 9.3691 -1.9447 -2.7971 22 6 10.7967 -1.7494 -3.3373 23 6 11.2638 -3.1254 -3.8553 24 6 10.3943 -4.1409 -3.0732 25 6 9.0183 -3.4324 -3.0051 26 6 6.2428 -1.7905 -2.2773 27 1 -1.0498 -0.0001 -0.0003 28 1 3.0094 -0.0332 1.0271 29 1 3.0089 0.9074 -0.4840 30 1 3.5842 -3.4722 2.9292 31 1 5.5205 0.2134 -1.6449 32 1 6.0457 0.6286 -4.0131 33 1 5.3547 -0.9743 -4.5129 34 1 9.3349 -1.6978 -1.7360 35 1 10.7916 -1.0260 -4.1526 36 1 11.4549 -1.4082 -2.5383 37 1 11.0809 -3.2120 -4.9264 38 1 12.3202 -3.2777 -3.6342 39 1 10.7951 -4.3025 -2.0725 40 1 10.3169 -5.0843 -3.6136 41 1 8.4363 -3.8084 -2.1636 42 1 8.4725 -3.5686 -3.9388 43 1 5.8111 -2.7137 -2.6640 44 1 6.7145 -1.9207 -1.3034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374200784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:57 Heat of formation + Delta-G solvation = 2.874132 kcal Electronic energy + Delta-G solvation = -28405.305010 eV Core-core repulsion = 24453.554065 eV Total energy + Delta-G solvation = -3951.750945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.41621 -38.40045 -36.72310 -36.65448 -35.99605 -34.80513 -32.86591 -31.65373 -30.67729 -28.85341 -28.42770 -26.95346 -25.91539 -24.31022 -23.06498 -20.92676 -20.56995 -18.74639 -18.62068 -18.36573 -17.50792 -17.23853 -16.64340 -16.33965 -16.05495 -15.84652 -15.56847 -14.76734 -14.59480 -14.04274 -13.86639 -13.64061 -13.44640 -13.40217 -13.12842 -13.00770 -12.76484 -12.57527 -12.32120 -11.75176 -11.45078 -11.39983 -11.26651 -11.24724 -11.21024 -11.04781 -10.95898 -10.88516 -10.78573 -10.77397 -10.59794 -10.48469 -10.17966 -9.86894 -9.67161 -9.45969 -9.21168 -8.66807 -8.49789 -6.94877 -4.32486 1.12021 2.66772 2.77930 2.91686 2.93688 2.95328 3.19069 3.47101 3.73091 3.83086 4.24197 4.31326 4.43879 4.44634 4.52498 4.77946 4.89096 4.98415 5.06130 5.15863 5.25567 5.31852 5.34466 5.36300 5.48130 5.51585 5.53270 5.59973 5.63331 5.66668 5.75020 5.79425 5.81493 5.83331 5.98062 6.04017 6.18024 6.20287 6.27023 6.41501 6.62401 7.14363 7.80742 7.98117 8.20782 8.22965 8.56324 8.63186 10.10564 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.003935 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.912462 B = 7114.203966 C = 8088.383658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.166 4.166 3 C 0.222 3.778 4 N -0.818 5.818 5 C -0.241 4.241 6 H 0.131 0.869 7 C 0.065 3.935 8 N -0.808 5.808 9 Si 0.871 3.129 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.254 1.254 13 S 2.477 3.523 14 O -0.988 6.988 15 O -0.962 6.962 16 C -0.672 4.672 17 C 0.138 3.862 18 N -0.639 5.639 19 C 0.545 3.455 20 O -0.549 6.549 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.116 4.116 26 C 0.143 3.857 27 H 0.214 0.786 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.286 0.714 31 H 0.142 0.858 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.217 1.547 -1.531 9.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.168 4.168 3 C 0.097 3.903 4 N -0.640 5.640 5 C -0.391 4.391 6 H 0.148 0.852 7 C -0.152 4.152 8 N -0.443 5.443 9 Si 0.698 3.302 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.178 1.178 13 S 2.578 3.422 14 O -0.978 6.978 15 O -0.951 6.951 16 C -0.769 4.769 17 C 0.014 3.986 18 N -0.374 5.374 19 C 0.335 3.665 20 O -0.427 6.427 21 C -0.130 4.130 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.160 4.160 25 C -0.154 4.154 26 C 0.020 3.980 27 H 0.231 0.769 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.160 0.840 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.124 0.876 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.268 1.888 -2.955 9.909 hybrid contribution 0.850 0.849 0.957 1.536 sum 10.118 2.736 -1.998 10.671 Atomic orbital electron populations 1.24672 0.95653 1.00918 1.01703 1.23265 0.94508 0.99603 0.99439 1.18250 0.84890 0.89003 0.98164 1.54003 1.65810 1.13260 1.30952 1.19519 1.40239 0.85128 0.94185 0.85199 1.25799 0.95343 0.97276 0.96832 1.69830 1.37080 1.29333 1.08072 0.87018 0.80601 0.82345 0.80264 1.19021 1.20539 1.17760 1.14219 0.77230 0.74041 0.76747 1.93387 1.66409 1.56808 1.81148 1.93399 1.84866 1.37437 1.79411 1.33432 1.32378 1.07629 1.03467 1.22436 0.83102 0.99388 0.93681 1.49868 1.04668 1.44939 1.37933 1.20237 0.80746 0.82275 0.83215 1.90641 1.76863 1.42909 1.32292 1.21897 0.94757 0.95623 1.00700 1.22172 0.93104 0.98611 1.01751 1.22359 0.99264 0.94426 1.00044 1.22502 0.94809 0.98142 1.00592 1.22383 0.98053 0.92154 1.02823 1.22613 0.87165 0.94539 0.93730 0.76948 0.90254 0.88747 0.90361 0.84018 0.89698 0.89723 0.88469 0.89331 0.91498 0.91601 0.91573 0.91187 0.91247 0.90350 0.91154 0.87566 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.77 19.25 29.55 0.57 -3.20 16 2 C -0.17 -3.35 13.63 -37.12 -0.51 -3.86 16 3 C 0.22 4.34 4.70 -6.83 -0.03 4.31 16 4 N -0.82 -17.31 2.44 -62.78 -0.15 -17.46 16 5 C -0.24 -5.52 9.55 -15.06 -0.14 -5.67 16 6 H 0.13 3.27 7.44 -52.49 -0.39 2.88 16 7 C 0.06 1.45 5.33 -17.43 -0.09 1.36 16 8 N -0.81 -19.13 13.97 55.49 0.78 -18.35 16 9 Si 0.87 16.55 24.93 -169.99 -4.24 12.31 16 10 H -0.26 -4.87 6.68 56.52 0.38 -4.49 16 11 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 12 H -0.25 -4.43 7.11 56.52 0.40 -4.02 16 13 S 2.48 50.70 5.38 -107.50 -0.58 50.12 16 14 O -0.99 -22.15 16.98 -57.54 -0.98 -23.12 16 15 O -0.96 -22.07 16.00 -57.54 -0.92 -22.99 16 16 C -0.67 -11.21 4.88 -26.08 -0.13 -11.34 16 17 C 0.14 2.23 8.22 -8.49 -0.07 2.16 16 18 N -0.64 -10.30 3.66 -185.05 -0.68 -10.98 16 19 C 0.55 8.84 7.24 -10.98 -0.08 8.76 16 20 O -0.55 -10.50 15.98 5.55 0.09 -10.41 16 21 C -0.11 -1.37 3.15 -90.65 -0.29 -1.66 16 22 C -0.12 -1.36 6.40 -25.61 -0.16 -1.53 16 23 C -0.12 -1.20 6.83 -25.07 -0.17 -1.38 16 24 C -0.12 -1.16 6.91 -24.72 -0.17 -1.33 16 25 C -0.12 -1.32 5.92 -25.06 -0.15 -1.46 16 26 C 0.14 2.23 7.62 -8.36 -0.06 2.17 16 27 H 0.21 2.83 7.80 -54.10 -0.42 2.41 16 28 H 0.08 1.51 2.63 -51.93 -0.14 1.37 16 29 H 0.09 1.59 7.61 -51.93 -0.40 1.19 16 30 H 0.29 6.18 8.31 -40.82 -0.34 5.84 16 31 H 0.14 2.17 8.14 -51.93 -0.42 1.74 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 34 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.09 1.21 6.39 -51.93 -0.33 0.87 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.86 7.85 -51.93 -0.41 0.46 16 43 H 0.11 1.67 7.42 -51.93 -0.39 1.28 16 44 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -29.81 374.84 -8.79 -38.61 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.28 Total: 9.29 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.49 Total: -12.67 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.05 Total: -46.79 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -1.81 Total: -56.52 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -4.24 Total: 12.31 kcal Atomic # 16 Polarization: 50.70 SS G_CDS: -0.58 Total: 50.12 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.81 -8.79 -38.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374200784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.482 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds