Wall clock time and date at job start Sat Apr 11 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47222 * 31.90330 * 3 2 1 5 5 C 1.36940 * 120.00192 * 274.83036 * 4 3 2 6 6 H 1.07990 * 120.00276 * 146.41661 * 5 4 3 7 7 C 1.38811 * 119.99564 * 326.40956 * 5 4 3 8 8 N 1.31622 * 119.99655 * 156.61443 * 7 5 4 9 9 Si 1.86803 * 120.00354 * 336.61923 * 7 5 4 10 10 H 1.48492 * 109.47228 * 95.44659 * 9 7 5 11 11 H 1.48502 * 109.47094 * 215.44753 * 9 7 5 12 12 H 1.48498 * 109.46727 * 335.44561 * 9 7 5 13 13 S 1.65611 * 120.00217 * 94.82991 * 4 3 2 14 14 O 1.42098 * 104.27282 * 333.92674 * 13 4 3 15 15 O 1.42093 * 104.27761 * 206.07003 * 13 4 3 16 16 C 1.81402 * 104.44944 * 89.99948 * 13 4 3 17 17 C 1.53492 * 114.20388 * 180.02562 * 16 13 4 18 18 N 1.47069 * 87.98249 * 220.14583 * 17 16 13 19 19 C 1.34776 * 136.06141 * 207.08325 * 18 17 16 20 20 O 1.21284 * 119.99598 * 359.97438 * 19 18 17 21 21 C 1.50703 * 120.00374 * 180.02562 * 19 18 17 22 22 C 1.53877 * 110.03184 * 180.02562 * 21 19 18 23 23 C 1.54266 * 106.59645 * 240.71410 * 22 21 19 24 24 C 1.54887 * 104.19664 * 336.39250 * 23 22 21 25 25 C 1.54266 * 110.03313 * 62.83464 * 21 19 18 26 26 C 1.47069 * 87.88797 * 27.34103 * 18 17 16 27 27 H 4.40636 * 5.51282 * 180.02562 * 4 1 2 28 28 H 1.09001 * 109.47591 * 271.89951 * 3 2 1 29 29 H 1.09004 * 109.46994 * 151.90286 * 3 2 1 30 30 H 0.97001 * 120.00130 * 180.02562 * 8 7 5 31 31 H 1.09006 * 113.28214 * 313.06920 * 16 13 4 32 32 H 1.08997 * 113.47120 * 105.37214 * 17 16 13 33 33 H 1.09003 * 113.46734 * 334.92280 * 17 16 13 34 34 H 1.08994 * 110.05330 * 301.41508 * 21 19 18 35 35 H 1.09001 * 110.03019 * 359.97438 * 22 21 19 36 36 H 1.09000 * 110.03245 * 121.43007 * 22 21 19 37 37 H 1.09003 * 110.48535 * 95.07160 * 23 22 21 38 38 H 1.08999 * 110.48274 * 217.71144 * 23 22 21 39 39 H 1.08998 * 110.75365 * 279.62766 * 24 23 22 40 40 H 1.09004 * 110.91104 * 156.33395 * 24 23 22 41 41 H 1.09000 * 110.48278 * 261.57512 * 25 21 19 42 42 H 1.09000 * 110.48316 * 24.21397 * 25 21 19 43 43 H 1.09006 * 113.46764 * 87.43538 * 26 18 17 44 44 H 1.08999 * 113.47134 * 217.87972 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1717 -0.7299 5 6 3.2695 -2.3724 -0.0855 6 1 3.0927 -3.2945 -0.6191 7 6 3.6335 -2.4043 1.2537 8 7 3.3302 -3.4500 1.9933 9 14 4.5536 -0.9633 2.0062 10 1 3.5873 -0.0494 2.6664 11 1 5.5249 -1.4663 3.0106 12 1 5.2802 -0.2287 0.9396 13 16 3.5247 -1.0449 -2.3345 14 8 2.7301 0.0357 -2.8037 15 8 3.3473 -2.3597 -2.8432 16 6 5.2814 -0.5923 -2.3391 17 6 5.8816 -0.4139 -3.7405 18 7 7.0931 -1.0888 -3.2508 19 6 8.4045 -1.0750 -3.5614 20 8 8.8081 -0.3632 -4.4566 21 6 9.3691 -1.9447 -2.7971 22 6 10.7967 -1.7494 -3.3373 23 6 11.2638 -3.1254 -3.8553 24 6 10.3943 -4.1409 -3.0732 25 6 9.0183 -3.4324 -3.0051 26 6 6.2428 -1.7905 -2.2773 27 1 -1.0498 -0.0001 -0.0003 28 1 3.0094 -0.0332 1.0271 29 1 3.0089 0.9074 -0.4840 30 1 3.5842 -3.4722 2.9292 31 1 5.5205 0.2134 -1.6449 32 1 6.0457 0.6286 -4.0131 33 1 5.3547 -0.9743 -4.5129 34 1 9.3349 -1.6978 -1.7360 35 1 10.7916 -1.0260 -4.1526 36 1 11.4549 -1.4082 -2.5383 37 1 11.0809 -3.2120 -4.9264 38 1 12.3202 -3.2777 -3.6342 39 1 10.7951 -4.3025 -2.0725 40 1 10.3169 -5.0843 -3.6136 41 1 8.4363 -3.8084 -2.1636 42 1 8.4725 -3.5686 -3.9388 43 1 5.8111 -2.7137 -2.6640 44 1 6.7145 -1.9207 -1.3034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374200784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:56 Heat of formation + Delta-G solvation = -16.914759 kcal Electronic energy + Delta-G solvation = -28406.163121 eV Core-core repulsion = 24453.554065 eV Total energy + Delta-G solvation = -3952.609056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.67516 -39.58641 -38.21717 -37.89308 -37.78019 -36.67648 -34.41497 -33.18381 -31.88455 -29.75656 -29.44656 -28.47027 -27.20864 -25.96886 -24.41319 -21.89981 -21.51150 -20.20920 -20.02549 -19.87451 -19.01311 -18.50400 -18.15985 -17.85091 -17.50343 -17.18147 -16.55115 -16.24271 -15.94210 -15.33965 -15.16297 -15.05438 -14.95712 -14.65543 -14.42126 -14.30783 -14.19086 -13.90508 -13.69259 -13.02933 -12.99607 -12.87279 -12.73453 -12.63811 -12.46025 -12.33931 -12.16012 -12.08451 -11.95773 -11.92989 -11.76372 -11.67215 -11.43543 -11.33771 -11.19278 -10.83070 -10.70920 -10.19593 -9.94578 -8.54828 -6.06953 -0.55683 1.29845 1.40744 1.41268 1.49035 1.62004 1.71293 2.01104 2.21432 2.28375 2.72104 2.82475 3.14962 3.21462 3.48397 3.57324 3.65262 3.66520 3.79695 3.91517 4.02607 4.15512 4.16297 4.33488 4.35306 4.38074 4.44997 4.47449 4.49172 4.60696 4.64265 4.77162 4.84662 4.94157 4.97005 5.05684 5.18529 5.19523 5.21014 5.35819 5.43695 5.56534 6.22946 6.52262 6.79255 6.93267 6.94099 6.99073 8.56216 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.003935 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.912462 B = 7114.203966 C = 8088.383658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.224 4.224 3 C 0.209 3.791 4 N -0.836 5.836 5 C -0.279 4.279 6 H 0.086 0.914 7 C 0.035 3.965 8 N -0.869 5.869 9 Si 0.912 3.088 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.223 1.223 13 S 2.530 3.470 14 O -1.000 7.000 15 O -0.987 6.987 16 C -0.654 4.654 17 C 0.127 3.873 18 N -0.638 5.638 19 C 0.541 3.459 20 O -0.581 6.581 21 C -0.107 4.107 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.119 4.119 26 C 0.141 3.859 27 H 0.252 0.748 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.286 0.714 31 H 0.171 0.829 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.104 0.896 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.090 3.150 -1.819 11.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.226 4.226 3 C 0.085 3.915 4 N -0.661 5.661 5 C -0.422 4.422 6 H 0.104 0.896 7 C -0.176 4.176 8 N -0.506 5.506 9 Si 0.736 3.264 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.145 1.145 13 S 2.632 3.368 14 O -0.990 6.990 15 O -0.978 6.978 16 C -0.758 4.758 17 C 0.003 3.997 18 N -0.373 5.373 19 C 0.333 3.667 20 O -0.462 6.462 21 C -0.128 4.128 22 C -0.156 4.156 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.156 4.156 26 C 0.018 3.982 27 H 0.268 0.732 28 H 0.102 0.898 29 H 0.138 0.862 30 H 0.097 0.903 31 H 0.189 0.811 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.122 0.878 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.061 3.410 -3.142 11.993 hybrid contribution 0.254 0.509 0.662 0.873 sum 11.315 3.919 -2.480 12.228 Atomic orbital electron populations 1.25711 0.96791 0.98938 0.99689 1.23908 0.95764 1.01535 1.01419 1.18588 0.85020 0.89204 0.98697 1.53482 1.68725 1.13687 1.30169 1.18870 1.44158 0.84278 0.94924 0.89609 1.26200 0.95376 0.99450 0.96608 1.69924 1.39992 1.32223 1.08449 0.86361 0.79792 0.79980 0.80315 1.18521 1.20710 1.14505 1.10484 0.78032 0.73091 0.75223 1.93411 1.67533 1.57031 1.81041 1.93412 1.85896 1.38807 1.79637 1.33055 1.27579 1.09606 1.05541 1.22593 0.83449 1.00662 0.92968 1.49832 1.04747 1.44795 1.37910 1.20916 0.80819 0.81981 0.82939 1.90631 1.77313 1.44396 1.33847 1.22032 0.94254 0.95487 1.01063 1.22183 0.92909 0.99015 1.01510 1.22360 1.00517 0.93501 0.99493 1.22505 0.93343 0.98084 1.01527 1.22424 0.99277 0.91607 1.02341 1.22712 0.86824 0.93663 0.94998 0.73196 0.89810 0.86196 0.90339 0.81144 0.88270 0.89111 0.86716 0.91810 0.89674 0.92573 0.89617 0.89666 0.90419 0.89622 0.92681 0.87827 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.67 19.25 74.32 1.43 -5.24 16 2 C -0.22 -8.92 13.63 31.13 0.42 -8.50 16 3 C 0.21 7.96 4.70 84.57 0.40 8.35 16 4 N -0.84 -35.08 2.44 -352.52 -0.86 -35.94 16 5 C -0.28 -13.29 9.55 84.03 0.80 -12.49 16 6 H 0.09 4.67 7.44 -2.92 -0.02 4.65 16 7 C 0.04 1.62 5.33 84.86 0.45 2.07 16 8 N -0.87 -43.54 13.97 21.65 0.30 -43.23 16 9 Si 0.91 33.17 24.93 68.60 1.71 34.88 16 10 H -0.26 -9.10 6.68 99.48 0.66 -8.44 16 11 H -0.28 -10.15 7.11 99.48 0.71 -9.44 16 12 H -0.22 -6.83 7.11 99.48 0.71 -6.13 16 13 S 2.53 100.01 5.38 -56.49 -0.30 99.70 16 14 O -1.00 -42.82 16.98 -127.65 -2.17 -44.99 16 15 O -0.99 -45.28 16.00 -127.65 -2.04 -47.32 16 16 C -0.65 -19.71 4.88 31.01 0.15 -19.56 16 17 C 0.13 3.75 8.22 83.19 0.68 4.44 16 18 N -0.64 -18.83 3.66 -857.75 -3.14 -21.96 16 19 C 0.54 16.39 7.24 87.66 0.63 17.03 16 20 O -0.58 -21.47 15.98 -3.04 -0.05 -21.52 16 21 C -0.11 -2.42 3.15 -10.81 -0.03 -2.46 16 22 C -0.12 -2.45 6.40 31.32 0.20 -2.25 16 23 C -0.12 -2.06 6.83 31.67 0.22 -1.85 16 24 C -0.12 -1.86 6.91 31.89 0.22 -1.64 16 25 C -0.12 -2.41 5.92 31.68 0.19 -2.22 16 26 C 0.14 4.03 7.62 83.27 0.63 4.66 16 27 H 0.25 6.04 7.80 -4.43 -0.03 6.00 16 28 H 0.08 3.09 2.63 -2.39 -0.01 3.08 16 29 H 0.12 3.74 7.61 -2.38 -0.02 3.73 16 30 H 0.29 13.14 8.31 -92.71 -0.77 12.37 16 31 H 0.17 4.37 8.14 -2.38 -0.02 4.35 16 32 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.09 2.58 8.11 -2.39 -0.02 2.56 16 34 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.06 1.66 6.39 -2.39 -0.02 1.65 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.05 1.28 7.85 -2.39 -0.02 1.26 16 43 H 0.10 3.08 7.42 -2.38 -0.02 3.07 16 44 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -67.14 374.84 0.82 -66.32 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.96 Total: 33.70 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 6.40 Total: -19.65 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -3.69 Total: -101.14 kcal Atomic # 8 Polarization: -109.57 SS G_CDS: -4.26 Total: -113.83 kcal Atomic # 14 Polarization: 33.17 SS G_CDS: 1.71 Total: 34.88 kcal Atomic # 16 Polarization: 100.01 SS G_CDS: -0.30 Total: 99.70 kcal Total: -67.14 0.82 -66.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374200784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.410 kcal (2) G-P(sol) polarization free energy of solvation -67.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds