Wall clock time and date at job start Sat Apr 11 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47428 * 2 1 4 4 C 1.50699 * 109.47048 * 239.99577 * 2 1 3 5 5 H 1.07990 * 120.00824 * 240.00209 * 4 2 1 6 6 C 1.37884 * 119.99532 * 60.00624 * 4 2 1 7 7 N 1.31509 * 120.00098 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99852 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47479 * 89.99534 * 8 6 4 10 10 H 1.48504 * 109.47184 * 209.99933 * 8 6 4 11 11 H 1.48509 * 109.47016 * 329.99363 * 8 6 4 12 12 C 1.53003 * 109.46999 * 120.00286 * 2 1 3 13 13 S 1.81398 * 109.46849 * 299.99653 * 12 2 1 14 14 O 1.42106 * 110.54253 * 68.38028 * 13 12 2 15 15 O 1.42096 * 110.54632 * 291.62336 * 13 12 2 16 16 N 1.65599 * 104.44970 * 180.02562 * 13 12 2 17 17 C 1.46494 * 120.00169 * 64.99850 * 16 13 12 18 18 H 1.09000 * 109.47081 * 25.00452 * 17 16 13 19 19 C 1.50705 * 109.47219 * 265.00217 * 17 16 13 20 20 N 1.34778 * 119.99810 * 179.97438 * 19 17 16 21 21 O 1.21280 * 120.00173 * 359.97438 * 19 17 16 22 22 C 1.50703 * 109.47581 * 145.00148 * 17 16 13 23 23 C 1.38235 * 120.00292 * 220.00303 * 22 17 16 24 24 C 1.38230 * 119.99899 * 179.97438 * 23 22 17 25 25 C 1.38235 * 120.00326 * 359.95697 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99503 * 39.97596 * 22 17 16 28 28 H 1.08998 * 109.47132 * 300.00089 * 1 2 3 29 29 H 1.08999 * 109.47389 * 59.99970 * 1 2 3 30 30 H 1.09002 * 109.47420 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47005 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46860 * 300.00353 * 3 2 1 33 33 H 1.08998 * 109.47037 * 59.99852 * 3 2 1 34 34 H 0.97004 * 120.00079 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47170 * 180.02562 * 12 2 1 36 36 H 1.09002 * 109.47393 * 59.99544 * 12 2 1 37 37 H 0.97009 * 120.00338 * 245.00514 * 16 13 12 38 38 H 0.97003 * 120.00248 * 0.02562 * 20 19 17 39 39 H 0.96995 * 120.00110 * 180.02562 * 20 19 17 40 40 H 1.08001 * 119.99730 * 359.97438 * 23 22 17 41 41 H 1.08000 * 120.00376 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 43 43 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.00455 * 0.02562 * 27 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3427 -2.1617 -4.4119 10 1 2.4866 -0.1414 -5.1123 11 1 3.6293 -1.7584 -3.7122 12 6 2.0400 -0.7213 1.2492 13 16 1.4354 0.1338 2.7303 14 8 0.0279 -0.0184 2.8544 15 8 2.0480 1.4099 2.8544 16 7 2.0541 -0.7401 3.9936 17 6 3.5025 -0.7964 4.2054 18 1 3.9681 0.0876 3.7698 19 6 4.0587 -2.0329 3.5474 20 7 5.3793 -2.2946 3.6120 21 8 3.3180 -2.7926 2.9599 22 6 3.7928 -0.8402 5.6835 23 6 4.8526 -0.1195 6.2015 24 6 5.1185 -0.1593 7.5574 25 6 4.3242 -0.9191 8.3956 26 6 3.2635 -1.6387 7.8778 27 6 2.9989 -1.6007 6.5215 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7089 1.1613 -3.4844 35 1 3.1300 -0.7209 1.2495 36 1 1.6766 -1.7490 1.2493 37 1 1.4574 -1.2148 4.5933 38 1 5.9717 -1.6873 4.0822 39 1 5.7373 -3.0902 3.1882 40 1 5.4728 0.4747 5.5467 41 1 5.9467 0.4035 7.9621 42 1 4.5346 -0.9537 9.4543 43 1 2.6431 -2.2327 8.5326 44 1 2.1710 -2.1638 6.1169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451015679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:01 Heat of formation + Delta-G solvation = -82.568892 kcal Electronic energy + Delta-G solvation = -28724.448303 eV Core-core repulsion = 24768.992271 eV Total energy + Delta-G solvation = -3955.456033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.43292 -38.86264 -36.55023 -36.22210 -35.41675 -35.10462 -33.83927 -31.60957 -31.32756 -30.93366 -26.87631 -26.54299 -25.67069 -25.16634 -22.97722 -22.41768 -20.64857 -19.60776 -18.81423 -17.99447 -17.75911 -17.24689 -16.57475 -15.98550 -15.81943 -15.50644 -15.21321 -14.96102 -14.69932 -14.56342 -14.39542 -13.93456 -13.69413 -13.16811 -13.00107 -12.93085 -12.67080 -12.44287 -12.07341 -11.90639 -11.48836 -11.42803 -11.31861 -11.06131 -11.03228 -10.92314 -10.73750 -10.64318 -10.32224 -10.23524 -10.03199 -9.79448 -9.71775 -9.59912 -9.28151 -9.23016 -9.00137 -8.62570 -8.35246 -5.98352 -4.09363 0.81158 1.00160 1.07989 2.46014 2.96776 3.29532 3.30712 3.36209 3.39013 3.64161 4.22353 4.31240 4.42283 4.52457 4.65842 4.69610 4.79834 4.81877 4.91897 5.15309 5.20361 5.26901 5.44987 5.61774 5.71161 5.78304 5.94317 6.11103 6.18986 6.22236 6.48645 6.63413 6.64497 6.78114 6.85224 6.93077 6.96295 7.08604 7.16518 7.36789 7.55562 7.73566 8.02650 8.10339 8.15743 8.39099 8.89534 9.55457 11.03078 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019617 B = 0.003498 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.994226 B = 8001.593266 C = 8643.807480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 C -0.163 4.163 4 C -0.498 4.498 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.885 5.885 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C -0.567 4.567 13 S 2.588 3.412 14 O -0.959 6.959 15 O -0.965 6.965 16 N -1.104 6.104 17 C 0.174 3.826 18 H 0.128 0.872 19 C 0.500 3.500 20 N -0.850 5.850 21 O -0.515 6.515 22 C -0.086 4.086 23 C -0.108 4.108 24 C -0.116 4.116 25 C -0.116 4.116 26 C -0.116 4.116 27 C -0.102 4.102 28 H 0.026 0.974 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.095 0.905 33 H 0.027 0.973 34 H 0.262 0.738 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.415 0.585 38 H 0.401 0.599 39 H 0.404 0.596 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.678 -3.826 20.339 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.221 4.221 4 C -0.537 4.537 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.200 1.200 12 C -0.702 4.702 13 S 2.687 3.313 14 O -0.950 6.950 15 O -0.955 6.955 16 N -0.858 5.858 17 C 0.062 3.938 18 H 0.145 0.855 19 C 0.281 3.719 20 N -0.415 5.415 21 O -0.388 6.388 22 C -0.088 4.088 23 C -0.127 4.127 24 C -0.134 4.134 25 C -0.134 4.134 26 C -0.134 4.134 27 C -0.121 4.121 28 H 0.045 0.955 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.114 0.886 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.250 0.750 38 H 0.229 0.771 39 H 0.236 0.764 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.490 -3.194 19.857 22.239 hybrid contribution 0.961 -1.327 -0.787 1.818 sum 10.451 -4.521 19.070 22.211 Atomic orbital electron populations 1.22272 0.96934 1.00717 1.02198 1.17956 0.92844 0.92099 0.89242 1.22275 0.99584 0.97907 1.02317 1.20954 1.31490 1.11942 0.89318 0.92274 1.24936 0.94979 0.94997 0.98873 1.69803 1.36506 1.22663 1.23370 0.86538 0.79201 0.79365 0.82533 1.20658 1.21192 1.20000 1.30458 1.10620 1.13349 1.15748 1.05863 0.74620 0.75065 0.75706 1.93559 1.29160 1.86640 1.85626 1.93536 1.78235 1.38086 1.85600 1.55781 1.11170 1.70561 1.48272 1.19506 0.83278 0.97524 0.93541 0.85451 1.21094 0.82864 0.87820 0.80137 1.43762 1.08546 1.29822 1.59346 1.90806 1.57980 1.48360 1.41690 1.19569 0.97093 0.99023 0.93118 1.21075 0.97082 0.98607 0.95912 1.21140 0.99836 0.99144 0.93282 1.21231 0.95379 0.96914 0.99920 1.21161 0.97788 0.99454 0.94977 1.21015 0.99191 0.98258 0.93631 0.95507 0.88629 0.94380 0.94590 0.88621 0.95405 0.92821 0.87172 0.85364 0.75015 0.77114 0.76442 0.85184 0.85570 0.85901 0.85697 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 7.77 37.16 0.29 -3.90 16 2 C 0.08 2.04 0.52 -155.66 -0.08 1.96 16 3 C -0.16 -4.08 7.78 37.16 0.29 -3.79 16 4 C -0.50 -13.54 8.01 -34.44 -0.28 -13.81 16 5 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 6 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -24.60 9.35 55.43 0.52 -24.08 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C -0.57 -12.02 3.72 37.16 0.14 -11.89 16 13 S 2.59 50.43 4.47 -107.50 -0.48 49.95 16 14 O -0.96 -21.12 15.70 -57.54 -0.90 -22.02 16 15 O -0.96 -20.23 15.01 -57.54 -0.86 -21.10 16 16 N -1.10 -16.33 4.80 -6.88 -0.03 -16.36 16 17 C 0.17 2.14 2.81 -70.23 -0.20 1.94 16 18 H 0.13 1.46 7.34 -51.93 -0.38 1.08 16 19 C 0.50 6.34 6.87 -10.98 -0.08 6.26 16 20 N -0.85 -7.15 8.77 31.22 0.27 -6.87 16 21 O -0.51 -8.55 15.79 5.56 0.09 -8.46 16 22 C -0.09 -0.87 4.74 -104.62 -0.50 -1.37 16 23 C -0.11 -0.87 9.51 -39.59 -0.38 -1.25 16 24 C -0.12 -0.82 10.05 -39.59 -0.40 -1.22 16 25 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 26 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 27 C -0.10 -1.00 9.15 -39.58 -0.36 -1.37 16 28 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 29 H 0.10 2.60 6.07 -51.93 -0.32 2.29 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 2.57 6.07 -51.93 -0.32 2.25 16 33 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.11 2.16 7.70 -51.92 -0.40 1.76 16 36 H 0.13 2.70 7.80 -51.92 -0.41 2.30 16 37 H 0.42 5.42 7.04 -34.48 -0.24 5.18 16 38 H 0.40 2.16 8.56 -40.82 -0.35 1.81 16 39 H 0.40 3.03 8.93 -40.82 -0.36 2.66 16 40 H 0.13 0.77 8.04 -52.49 -0.42 0.35 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 43 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 44 H 0.13 1.19 6.82 -52.49 -0.36 0.83 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -35.37 362.74 -9.16 -44.53 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -5.78 Total: 12.16 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: -2.43 Total: -29.36 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.76 Total: -47.32 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -1.68 Total: -51.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 50.43 SS G_CDS: -0.48 Total: 49.95 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.37 -9.16 -44.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451015679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.039 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds