Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47223 * 2 1 4 4 C 1.50702 * 109.47220 * 239.99838 * 2 1 3 5 5 H 1.08000 * 119.99528 * 240.00535 * 4 2 1 6 6 C 1.37875 * 119.99940 * 60.00062 * 4 2 1 7 7 N 1.31515 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99859 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46859 * 60.00209 * 8 6 4 10 10 H 1.48498 * 109.46816 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47167 * 299.99825 * 8 6 4 12 12 C 1.52998 * 109.46698 * 119.99923 * 2 1 3 13 13 N 1.46502 * 109.47521 * 299.99593 * 12 2 1 14 14 C 1.34771 * 120.00228 * 180.02562 * 13 12 2 15 15 O 1.21583 * 120.00195 * 359.97438 * 14 13 12 16 16 N 1.34782 * 120.00056 * 180.02562 * 14 13 12 17 17 C 1.39945 * 119.99970 * 185.31431 * 16 14 13 18 18 C 1.38885 * 120.07048 * 33.27031 * 17 16 14 19 19 C 1.38092 * 119.93133 * 179.97438 * 18 17 16 20 20 C 1.38305 * 120.06440 * 0.26859 * 19 18 17 21 21 C 1.38260 * 120.14268 * 359.44817 * 20 19 18 22 22 S 1.76199 * 119.96577 * 180.27503 * 21 20 19 23 23 C 1.81410 * 104.44977 * 270.27946 * 22 21 20 24 24 O 1.42106 * 104.27698 * 26.34819 * 22 21 20 25 25 O 1.42096 * 104.27918 * 154.20613 * 22 21 20 26 26 C 1.38131 * 120.06991 * 0.55564 * 21 20 19 27 27 H 1.08998 * 109.47067 * 300.00278 * 1 2 3 28 28 H 1.09003 * 109.46943 * 60.00028 * 1 2 3 29 29 H 1.08997 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47112 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47137 * 299.99853 * 3 2 1 32 32 H 1.08998 * 109.47326 * 59.99880 * 3 2 1 33 33 H 0.97001 * 119.99827 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46899 * 179.97438 * 12 2 1 35 35 H 1.08997 * 109.47451 * 60.00069 * 12 2 1 36 36 H 0.96998 * 119.99548 * 0.02562 * 13 12 2 37 37 H 0.97001 * 119.99851 * 5.31179 * 16 14 13 38 38 H 1.08002 * 120.03274 * 359.97438 * 18 17 16 39 39 H 1.07997 * 119.96890 * 179.97438 * 19 18 17 40 40 H 1.08005 * 119.92798 * 179.72811 * 20 19 18 41 41 H 1.08996 * 109.47092 * 60.00311 * 23 22 21 42 42 H 1.09001 * 109.46647 * 180.02562 * 23 22 21 43 43 H 1.08994 * 109.46710 * 300.00063 * 23 22 21 44 44 H 1.07998 * 120.03947 * 179.73768 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8776 -0.4908 3.6695 15 8 2.5765 -1.4794 3.7812 16 7 1.4279 0.1444 4.7700 17 6 1.8555 -0.2651 6.0381 18 6 3.1396 -0.7652 6.2116 19 6 3.5587 -1.1680 7.4642 20 6 2.6994 -1.0789 8.5442 21 6 1.4225 -0.5761 8.3759 22 16 0.3341 -0.4579 9.7564 23 6 -0.5338 -2.0507 9.7862 24 8 1.2005 -0.3412 10.8768 25 8 -0.5598 0.5906 9.4093 26 6 0.9972 -0.1716 7.1255 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7090 1.1613 -3.4844 34 1 3.1299 -0.7217 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 0.9937 0.7579 2.3564 37 1 0.8079 0.8853 4.6831 38 1 3.8095 -0.8390 5.3677 39 1 4.5569 -1.5573 7.5997 40 1 3.0280 -1.3986 9.5221 41 1 0.1900 -2.8567 9.9066 42 1 -1.2369 -2.0658 10.6191 43 1 -1.0764 -2.1862 8.8507 44 1 -0.0017 0.2171 6.9937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459252384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = -68.596338 kcal Electronic energy + Delta-G solvation = -26898.288591 eV Core-core repulsion = 22943.438454 eV Total energy + Delta-G solvation = -3954.850137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.64826 -38.86634 -37.40819 -36.61810 -36.24143 -34.73917 -33.46112 -31.52076 -31.07145 -29.90515 -29.50487 -25.80179 -25.72168 -25.00075 -23.70110 -22.74826 -21.03098 -19.33213 -18.87420 -18.51990 -18.20732 -16.55817 -16.47565 -16.30197 -16.00395 -15.88719 -15.43745 -14.91232 -14.65044 -14.59973 -14.01848 -13.83735 -13.70058 -13.59174 -13.31970 -12.96360 -12.90070 -12.51902 -12.38926 -12.33744 -12.27183 -11.92606 -11.49958 -11.43630 -11.26400 -11.09320 -10.91906 -10.78059 -10.59979 -10.43822 -10.27682 -10.01465 -9.71464 -9.46040 -9.40835 -8.87652 -8.68777 -8.43754 -8.20926 -6.07870 -4.18330 -0.27620 0.64271 1.04113 2.52465 2.71768 3.07464 3.26311 3.31000 3.34479 3.44222 3.68159 3.80181 4.29664 4.37761 4.42027 4.47517 4.64903 4.79241 4.97394 5.18061 5.19074 5.24164 5.27449 5.45386 5.73454 5.95979 6.09202 6.13846 6.23691 6.24809 6.41092 6.65852 6.73995 6.74331 6.80220 6.89889 6.94133 7.06510 7.28512 7.48292 7.63586 7.93837 8.02960 8.16210 8.31995 8.68853 8.82303 9.47805 10.93575 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029294 B = 0.002037 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.585710 B =13743.892604 C =14131.444465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.057 3.943 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.148 3.852 13 N -0.724 5.724 14 C 0.696 3.304 15 O -0.582 6.582 16 N -0.694 5.694 17 C 0.163 3.837 18 C -0.067 4.067 19 C -0.118 4.118 20 C -0.049 4.049 21 C -0.641 4.641 22 S 2.503 3.497 23 C -0.650 4.650 24 O -0.939 6.939 25 O -0.939 6.939 26 C -0.062 4.062 27 H 0.005 0.995 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.005 0.995 33 H 0.261 0.739 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.397 0.603 37 H 0.408 0.592 38 H 0.146 0.854 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.259 -2.279 22.653 22.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.026 3.974 13 N -0.377 5.377 14 C 0.396 3.604 15 O -0.460 6.460 16 N -0.342 5.342 17 C 0.066 3.934 18 C -0.088 4.088 19 C -0.138 4.138 20 C -0.069 4.069 21 C -0.728 4.728 22 S 2.683 3.317 23 C -0.800 4.800 24 O -0.936 6.936 25 O -0.936 6.936 26 C -0.084 4.084 27 H 0.024 0.976 28 H 0.105 0.895 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.024 0.976 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.232 0.768 37 H 0.244 0.756 38 H 0.164 0.836 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.788 -2.358 22.981 23.171 hybrid contribution -0.085 -0.388 -1.700 1.745 sum -1.873 -2.745 21.281 21.539 Atomic orbital electron populations 1.21839 0.97728 0.99226 1.00095 1.18366 0.92831 0.92795 0.90409 1.21839 0.98645 0.98304 1.00100 1.20917 1.31710 1.12189 0.89800 0.92430 1.24878 0.94809 0.94908 0.98886 1.69787 1.36516 1.22670 1.23433 0.86613 0.79245 0.79780 0.82103 1.20259 1.21307 1.20258 1.21699 0.98094 0.95554 0.82085 1.45583 1.54995 1.32787 1.04359 1.16063 0.80849 0.82830 0.80610 1.90904 1.42570 1.26876 1.85643 1.42778 1.50600 1.37350 1.03433 1.17543 0.92890 0.98916 0.84048 1.21633 0.94156 0.94777 0.98233 1.21196 1.00293 1.00287 0.91996 1.20861 0.91676 0.94804 0.99589 1.30234 1.11636 1.15653 1.15282 1.05041 0.75164 0.77135 0.74351 1.30221 1.14865 1.22924 1.11977 1.93583 1.64818 1.85829 1.49407 1.93587 1.65536 1.50860 1.83608 1.20579 0.99152 0.98066 0.90580 0.97580 0.89525 0.95379 0.95374 0.89526 0.97570 0.92880 0.92597 0.92621 0.76784 0.75588 0.83585 0.84730 0.84211 0.84885 0.85066 0.84860 0.83915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.84 8.08 37.16 0.30 -2.54 16 4 C -0.51 -12.89 8.01 -34.44 -0.28 -13.16 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.05 9.35 55.43 0.52 -22.53 16 8 Si 0.89 20.30 29.54 -169.99 -5.02 15.27 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.15 2.98 4.50 -4.04 -0.02 2.97 16 13 N -0.72 -11.97 4.96 -65.22 -0.32 -12.29 16 14 C 0.70 11.35 8.30 -86.92 -0.72 10.62 16 15 O -0.58 -11.37 14.03 5.29 0.07 -11.29 16 16 N -0.69 -8.66 5.35 -14.22 -0.08 -8.74 16 17 C 0.16 2.03 6.28 -83.69 -0.53 1.50 16 18 C -0.07 -0.86 8.66 -39.40 -0.34 -1.20 16 19 C -0.12 -1.21 10.04 -39.61 -0.40 -1.60 16 20 C -0.05 -0.46 9.47 -39.55 -0.37 -0.83 16 21 C -0.64 -5.99 5.65 -39.61 -0.22 -6.21 16 22 S 2.50 19.18 5.80 -107.50 -0.62 18.56 16 23 C -0.65 -2.50 10.80 101.05 1.09 -1.41 16 24 O -0.94 -9.84 17.13 -57.54 -0.99 -10.83 16 25 O -0.94 -10.17 17.12 -57.54 -0.99 -11.15 16 26 C -0.06 -0.64 9.39 -39.40 -0.37 -1.01 16 27 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 28 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 32 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 33 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.40 5.82 6.18 -40.82 -0.25 5.57 16 37 H 0.41 3.84 8.83 -40.82 -0.36 3.48 16 38 H 0.15 2.09 6.41 -52.49 -0.34 1.75 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.14 0.98 7.57 -52.48 -0.40 0.58 16 41 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.13 0.30 8.14 -51.92 -0.42 -0.13 16 43 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.14 1.22 7.57 -52.49 -0.40 0.82 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -33.49 371.04 -9.57 -43.06 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.01 Total: 6.96 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -1.73 Total: -12.62 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.12 Total: -43.55 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -1.90 Total: -33.27 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 19.18 SS G_CDS: -0.62 Total: 18.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.49 -9.57 -43.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459252384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.539 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds