Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47223 * 2 1 4 4 C 1.50702 * 109.47220 * 239.99838 * 2 1 3 5 5 H 1.08000 * 119.99528 * 240.00535 * 4 2 1 6 6 C 1.37875 * 119.99940 * 60.00062 * 4 2 1 7 7 N 1.31515 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99859 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46859 * 60.00209 * 8 6 4 10 10 H 1.48498 * 109.46816 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47167 * 299.99825 * 8 6 4 12 12 C 1.52998 * 109.46698 * 119.99923 * 2 1 3 13 13 N 1.46502 * 109.47521 * 299.99593 * 12 2 1 14 14 C 1.34771 * 120.00228 * 180.02562 * 13 12 2 15 15 O 1.21583 * 120.00195 * 359.97438 * 14 13 12 16 16 N 1.34782 * 120.00056 * 180.02562 * 14 13 12 17 17 C 1.39945 * 119.99970 * 185.31431 * 16 14 13 18 18 C 1.38885 * 120.07048 * 33.27031 * 17 16 14 19 19 C 1.38092 * 119.93133 * 179.97438 * 18 17 16 20 20 C 1.38305 * 120.06440 * 0.26859 * 19 18 17 21 21 C 1.38260 * 120.14268 * 359.44817 * 20 19 18 22 22 S 1.76199 * 119.96577 * 180.27503 * 21 20 19 23 23 C 1.81410 * 104.44977 * 270.27946 * 22 21 20 24 24 O 1.42106 * 104.27698 * 26.34819 * 22 21 20 25 25 O 1.42096 * 104.27918 * 154.20613 * 22 21 20 26 26 C 1.38131 * 120.06991 * 0.55564 * 21 20 19 27 27 H 1.08998 * 109.47067 * 300.00278 * 1 2 3 28 28 H 1.09003 * 109.46943 * 60.00028 * 1 2 3 29 29 H 1.08997 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47112 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47137 * 299.99853 * 3 2 1 32 32 H 1.08998 * 109.47326 * 59.99880 * 3 2 1 33 33 H 0.97001 * 119.99827 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46899 * 179.97438 * 12 2 1 35 35 H 1.08997 * 109.47451 * 60.00069 * 12 2 1 36 36 H 0.96998 * 119.99548 * 0.02562 * 13 12 2 37 37 H 0.97001 * 119.99851 * 5.31179 * 16 14 13 38 38 H 1.08002 * 120.03274 * 359.97438 * 18 17 16 39 39 H 1.07997 * 119.96890 * 179.97438 * 19 18 17 40 40 H 1.08005 * 119.92798 * 179.72811 * 20 19 18 41 41 H 1.08996 * 109.47092 * 60.00311 * 23 22 21 42 42 H 1.09001 * 109.46647 * 180.02562 * 23 22 21 43 43 H 1.08994 * 109.46710 * 300.00063 * 23 22 21 44 44 H 1.07998 * 120.03947 * 179.73768 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.8258 -2.5203 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8776 -0.4908 3.6695 15 8 2.5765 -1.4794 3.7812 16 7 1.4279 0.1444 4.7700 17 6 1.8555 -0.2651 6.0381 18 6 3.1396 -0.7652 6.2116 19 6 3.5587 -1.1680 7.4642 20 6 2.6994 -1.0789 8.5442 21 6 1.4225 -0.5761 8.3759 22 16 0.3341 -0.4579 9.7564 23 6 -0.5338 -2.0507 9.7862 24 8 1.2005 -0.3412 10.8768 25 8 -0.5598 0.5906 9.4093 26 6 0.9972 -0.1716 7.1255 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 0.7090 1.1613 -3.4844 34 1 3.1299 -0.7217 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 0.9937 0.7579 2.3564 37 1 0.8079 0.8853 4.6831 38 1 3.8095 -0.8390 5.3677 39 1 4.5569 -1.5573 7.5997 40 1 3.0280 -1.3986 9.5221 41 1 0.1900 -2.8567 9.9066 42 1 -1.2369 -2.0658 10.6191 43 1 -1.0764 -2.1862 8.8507 44 1 -0.0017 0.2171 6.9937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459252384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -92.704458 kcal Electronic energy + Delta-G solvation = -26899.333998 eV Core-core repulsion = 22943.438454 eV Total energy + Delta-G solvation = -3955.895544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.78112 -39.92035 -38.22983 -38.10393 -36.94953 -35.86242 -35.07550 -32.81031 -32.30144 -30.58312 -30.18982 -27.56766 -27.46576 -26.70488 -24.57864 -23.69297 -22.21488 -20.66989 -20.03523 -19.71378 -19.06351 -17.79551 -17.39425 -17.18873 -17.10869 -16.84353 -16.64638 -16.47167 -15.95450 -15.68946 -15.26815 -14.83764 -14.72507 -14.66398 -14.18811 -14.01708 -13.90407 -13.85058 -13.38577 -13.21349 -13.10939 -13.09797 -13.06274 -12.71756 -12.66802 -12.62857 -12.26770 -12.14323 -12.06858 -11.87915 -11.59432 -11.49169 -11.31272 -11.14314 -10.72035 -10.40238 -10.28876 -10.06614 -9.21642 -8.02643 -6.18262 -0.83483 -0.17324 0.20111 1.44293 1.45402 1.50558 1.56203 1.90491 1.99031 2.45654 2.52476 3.06215 3.15152 3.21358 3.28391 3.80861 4.04899 4.09052 4.15834 4.20880 4.31370 4.42437 4.48320 4.51478 4.69015 4.70360 4.95945 4.97509 5.01646 5.05090 5.06923 5.15169 5.19374 5.28810 5.31746 5.37862 5.55544 5.66855 5.67170 5.86817 5.92003 6.14877 6.21229 6.42859 6.85948 6.94593 7.42282 7.49604 8.96064 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.029294 B = 0.002037 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.585710 B =13743.892604 C =14131.444465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.053 3.947 3 C -0.122 4.122 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.277 1.277 12 C 0.167 3.833 13 N -0.718 5.718 14 C 0.698 3.302 15 O -0.617 6.617 16 N -0.677 5.677 17 C 0.138 3.862 18 C -0.092 4.092 19 C -0.120 4.120 20 C -0.048 4.048 21 C -0.642 4.642 22 S 2.514 3.486 23 C -0.628 4.628 24 O -0.971 6.971 25 O -0.974 6.974 26 C -0.061 4.061 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.260 0.740 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.408 0.592 37 H 0.424 0.576 38 H 0.122 0.878 39 H 0.155 0.845 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.148 0.852 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 -2.883 24.769 25.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.052 3.948 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.064 0.936 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.372 5.372 14 C 0.399 3.601 15 O -0.497 6.497 16 N -0.326 5.326 17 C 0.042 3.958 18 C -0.113 4.113 19 C -0.139 4.139 20 C -0.067 4.067 21 C -0.727 4.727 22 S 2.696 3.304 23 C -0.782 4.782 24 O -0.968 6.968 25 O -0.972 6.972 26 C -0.083 4.083 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.245 0.755 37 H 0.262 0.738 38 H 0.140 0.860 39 H 0.173 0.827 40 H 0.183 0.817 41 H 0.172 0.828 42 H 0.174 0.826 43 H 0.167 0.833 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.841 -2.888 25.116 25.441 hybrid contribution 0.223 -0.260 -2.209 2.236 sum -2.617 -3.148 22.907 23.270 Atomic orbital electron populations 1.21681 0.97075 0.98756 1.00434 1.18353 0.93289 0.92982 0.90197 1.21684 0.97963 0.97911 1.00401 1.21234 1.31776 1.12222 0.91471 0.93575 1.25444 0.95161 0.95591 1.00967 1.69898 1.36950 1.23252 1.23666 0.85831 0.78618 0.78836 0.79605 1.20217 1.20956 1.20287 1.21202 0.96978 0.94806 0.82733 1.45244 1.55339 1.33006 1.03658 1.16094 0.80429 0.82523 0.81081 1.90884 1.44060 1.28552 1.86199 1.42488 1.50280 1.37269 1.02605 1.17748 0.93410 1.00416 0.84227 1.21598 0.94414 0.96584 0.98655 1.21451 1.01485 0.99690 0.91295 1.21219 0.91389 0.93824 1.00297 1.30596 1.12229 1.14472 1.15424 1.04721 0.74359 0.78387 0.72886 1.30060 1.15163 1.18956 1.13973 1.93543 1.66023 1.87162 1.50055 1.93541 1.65790 1.54106 1.83742 1.20783 0.99621 0.97595 0.90285 0.94365 0.91946 0.96195 0.96290 0.91928 0.94444 0.93037 0.94164 0.94129 0.75476 0.73774 0.85988 0.82734 0.81742 0.82754 0.82646 0.83316 0.82185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 8.08 71.98 0.58 -4.61 16 2 C 0.05 2.34 0.50 -52.93 -0.03 2.31 16 3 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 4 C -0.53 -27.24 8.01 25.60 0.21 -27.03 16 5 H 0.05 2.42 7.74 -2.91 -0.02 2.40 16 6 C 0.03 1.46 5.15 84.65 0.44 1.90 16 7 N -0.90 -47.12 9.35 21.45 0.20 -46.92 16 8 Si 0.94 41.90 29.54 68.60 2.03 43.93 16 9 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 C 0.17 6.78 4.50 86.38 0.39 7.17 16 13 N -0.72 -23.25 4.96 -478.54 -2.37 -25.62 16 14 C 0.70 22.61 8.30 179.05 1.49 24.09 16 15 O -0.62 -24.54 14.03 -3.98 -0.06 -24.60 16 16 N -0.68 -16.36 5.35 -317.18 -1.70 -18.05 16 17 C 0.14 3.34 6.28 38.15 0.24 3.58 16 18 C -0.09 -2.35 8.66 22.39 0.19 -2.16 16 19 C -0.12 -2.33 10.04 22.25 0.22 -2.11 16 20 C -0.05 -0.79 9.47 22.29 0.21 -0.58 16 21 C -0.64 -10.72 5.65 22.25 0.13 -10.60 16 22 S 2.51 32.68 5.80 -56.49 -0.33 32.36 16 23 C -0.63 -2.11 10.80 113.37 1.22 -0.88 16 24 O -0.97 -18.50 17.13 -127.65 -2.19 -20.69 16 25 O -0.97 -19.52 17.12 -127.65 -2.19 -21.71 16 26 C -0.06 -1.18 9.39 22.39 0.21 -0.97 16 27 H 0.04 1.34 6.86 -2.39 -0.02 1.32 16 28 H 0.06 3.00 6.07 -2.39 -0.01 2.98 16 29 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 3.02 6.07 -2.39 -0.01 3.01 16 32 H 0.04 1.33 6.86 -2.39 -0.02 1.31 16 33 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 34 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.41 11.23 6.18 -92.71 -0.57 10.66 16 37 H 0.42 7.31 8.83 -92.71 -0.82 6.49 16 38 H 0.12 3.68 6.41 -2.91 -0.02 3.66 16 39 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 40 H 0.17 1.85 7.57 -2.91 -0.02 1.83 16 41 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.16 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.16 2.41 7.57 -2.91 -0.02 2.38 16 Total: -1.00 -73.79 371.04 -0.87 -74.66 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -0.35 Total: 21.19 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 6.08 Total: -14.54 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -3.87 Total: -90.60 kcal Atomic # 8 Polarization: -62.56 SS G_CDS: -4.43 Total: -66.99 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 32.68 SS G_CDS: -0.33 Total: 32.36 kcal Total: -73.79 -0.87 -74.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459252384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.041 kcal (2) G-P(sol) polarization free energy of solvation -73.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds