Wall clock time and date at job start Sat Apr 11 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47004 * 78.06976 * 3 2 1 5 5 C 1.34784 * 120.00067 * 84.06828 * 4 3 2 6 6 O 1.21589 * 119.99965 * 185.69324 * 5 4 3 7 7 N 1.34774 * 120.00053 * 5.68521 * 5 4 3 8 8 C 1.46490 * 120.00307 * 184.85837 * 7 5 4 9 9 C 1.52997 * 109.47367 * 184.60652 * 8 7 5 10 10 C 1.50695 * 115.55439 * 294.64761 * 9 8 7 11 11 H 1.08002 * 119.99864 * 95.15670 * 10 9 8 12 12 C 1.37878 * 120.00132 * 275.17038 * 10 9 8 13 13 N 1.31512 * 120.00164 * 7.06162 * 12 10 9 14 14 Si 1.86801 * 119.99936 * 187.07406 * 12 10 9 15 15 H 1.48501 * 109.46849 * 269.99621 * 14 12 10 16 16 H 1.48502 * 109.47291 * 29.99269 * 14 12 10 17 17 H 1.48500 * 109.47282 * 149.99389 * 14 12 10 18 18 C 1.52999 * 117.49746 * 80.32151 * 9 8 7 19 19 C 1.53003 * 117.49817 * 148.98023 * 9 8 7 20 20 C 1.46499 * 120.00262 * 264.06109 * 4 3 2 21 21 H 1.08992 * 110.01482 * 179.30139 * 20 4 3 22 22 C 1.53883 * 110.02491 * 57.92199 * 20 4 3 23 23 C 1.54187 * 108.69082 * 193.57359 * 22 20 4 24 24 S 1.82924 * 105.11054 * 27.83981 * 23 22 20 25 25 O 1.42099 * 109.34890 * 244.51848 * 24 23 22 26 26 O 1.42093 * 109.47695 * 111.34882 * 24 23 22 27 27 C 1.55046 * 110.02954 * 300.68646 * 20 4 3 28 28 H 4.40636 * 5.51421 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47208 * 318.06881 * 3 2 1 30 30 H 1.08999 * 109.47110 * 198.06867 * 3 2 1 31 31 H 0.97006 * 119.99703 * 4.86346 * 7 5 4 32 32 H 1.09001 * 109.46989 * 64.60794 * 8 7 5 33 33 H 1.09001 * 109.47570 * 304.61002 * 8 7 5 34 34 H 0.97005 * 119.99739 * 355.43521 * 13 12 10 35 35 H 1.09002 * 117.49827 * 215.00373 * 18 9 8 36 36 H 1.08994 * 117.49896 * 0.02562 * 18 9 8 37 37 H 1.09006 * 117.50134 * 359.97438 * 19 9 8 38 38 H 1.08996 * 117.50067 * 144.97600 * 19 9 8 39 39 H 1.09002 * 109.64590 * 313.38098 * 22 20 4 40 40 H 1.08998 * 109.64705 * 73.67509 * 22 20 4 41 41 H 1.08995 * 110.27998 * 268.94190 * 23 22 20 42 42 H 1.09009 * 110.42708 * 146.80437 * 23 22 20 43 43 H 1.09008 * 110.78690 * 279.98961 * 27 20 4 44 44 H 1.08994 * 110.79287 * 43.25805 * 27 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2846 -1.3514 5 6 3.2449 0.7117 -2.2524 6 8 3.5505 0.4605 -3.4021 7 7 3.0163 1.9863 -1.8790 8 6 3.0316 3.0566 -2.8791 9 6 2.8602 4.4080 -2.1826 10 6 1.5324 4.6259 -1.5043 11 1 1.4241 4.4184 -0.4499 12 6 0.4555 5.0899 -2.2296 13 7 0.5455 5.2103 -3.5361 14 14 -1.1311 5.5479 -1.3566 15 1 -2.0144 4.3567 -1.2779 16 1 -0.8214 6.0258 0.0149 17 1 -1.8190 6.6252 -2.1126 18 6 4.0972 5.0282 -1.5299 19 6 3.5341 5.6232 -2.8230 20 6 3.5029 -1.6528 -1.7234 21 1 3.8306 -1.6814 -2.7626 22 6 2.3027 -2.5948 -1.5232 23 6 2.8021 -4.0521 -1.5881 24 16 4.5430 -3.9849 -1.0305 25 8 5.3956 -4.3640 -2.1022 26 8 4.6619 -4.6291 0.2304 27 6 4.6330 -2.1693 -0.7959 28 1 -1.0500 0.0002 -0.0001 29 1 3.0097 -0.7637 0.6867 30 1 3.0089 0.9778 0.3187 31 1 2.8418 2.1951 -0.9479 32 1 2.2151 2.9056 -3.5853 33 1 3.9816 3.0411 -3.4134 34 1 1.3891 5.0363 -3.9823 35 1 3.9505 5.5938 -0.6097 36 1 5.0331 4.4737 -1.5970 37 1 4.1000 5.4599 -3.7402 38 1 3.0169 6.5802 -2.7539 39 1 1.8477 -2.4069 -0.5507 40 1 1.5671 -2.4233 -2.3090 41 1 2.7464 -4.4254 -2.6106 42 1 2.2157 -4.6853 -0.9221 43 1 5.6018 -1.7854 -1.1158 44 1 4.4353 -1.9001 0.2416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491242721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:51 Heat of formation + Delta-G solvation = -8.607635 kcal Electronic energy + Delta-G solvation = -28098.859772 eV Core-core repulsion = 24146.610940 eV Total energy + Delta-G solvation = -3952.248832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33157 -37.72560 -37.34655 -36.77094 -36.31815 -34.87644 -33.24082 -32.45150 -31.96704 -29.92990 -27.43001 -26.53272 -25.11503 -24.63420 -21.78888 -21.33051 -20.03823 -19.79997 -19.18673 -18.51963 -18.00884 -17.22789 -16.86370 -16.56366 -16.02405 -15.76035 -15.45098 -14.73829 -14.57950 -14.43967 -14.21972 -13.87494 -13.83221 -13.51528 -13.28752 -13.07004 -12.80711 -12.69123 -12.46351 -12.43602 -12.33877 -12.24203 -11.79743 -11.47716 -11.13221 -10.99512 -10.88670 -10.77200 -10.55655 -10.51315 -10.27850 -10.21747 -9.91726 -9.67598 -9.05557 -8.75781 -8.56226 -8.46799 -8.23406 -6.45145 -4.21112 -0.32672 2.06770 2.36883 2.80961 3.14024 3.21003 3.33542 3.37569 3.42323 3.52728 3.66435 3.98964 4.14113 4.20523 4.32402 4.41445 4.42186 4.45680 4.62148 4.89539 5.02297 5.12559 5.14832 5.23461 5.25935 5.37292 5.57574 5.64440 5.75948 5.90355 6.08163 6.16699 6.25014 6.33372 6.46691 6.54688 6.78463 6.97798 7.07733 7.13475 7.22627 7.59940 8.10671 8.25940 8.30461 8.75933 8.86076 9.54856 10.94370 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017759 B = 0.003108 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.244055 B = 9005.812289 C = 9817.353360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.220 4.220 3 C 0.219 3.781 4 N -0.617 5.617 5 C 0.705 3.295 6 O -0.593 6.593 7 N -0.711 5.711 8 C 0.175 3.825 9 C 0.005 3.995 10 C -0.575 4.575 11 H 0.052 0.948 12 C 0.031 3.969 13 N -0.900 5.900 14 Si 1.067 2.933 15 H -0.289 1.289 16 H -0.289 1.289 17 H -0.284 1.284 18 C -0.194 4.194 19 C -0.170 4.170 20 C 0.164 3.836 21 H 0.129 0.871 22 C -0.129 4.129 23 C -0.587 4.587 24 S 2.394 3.606 25 O -0.932 6.932 26 O -0.938 6.938 27 C -0.610 4.610 28 H 0.217 0.783 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.399 0.601 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.276 0.724 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.504 -15.121 8.241 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.222 4.222 3 C 0.096 3.904 4 N -0.353 5.353 5 C 0.406 3.594 6 O -0.472 6.472 7 N -0.364 5.364 8 C 0.051 3.949 9 C 0.004 3.996 10 C -0.613 4.613 11 H 0.070 0.930 12 C -0.176 4.176 13 N -0.534 5.534 14 Si 0.896 3.104 15 H -0.215 1.215 16 H -0.215 1.215 17 H -0.210 1.210 18 C -0.231 4.231 19 C -0.208 4.208 20 C 0.057 3.943 21 H 0.146 0.854 22 C -0.168 4.168 23 C -0.717 4.717 24 S 2.576 3.424 25 O -0.929 6.929 26 O -0.935 6.935 27 C -0.740 4.740 28 H 0.233 0.767 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.235 0.765 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.870 -15.433 7.219 17.278 hybrid contribution 0.561 0.329 0.661 0.927 sum 3.431 -15.105 7.879 17.379 Atomic orbital electron populations 1.24970 0.95952 0.99656 0.97695 1.23352 0.94783 1.01614 1.02404 1.18281 0.84172 1.03322 0.84638 1.46908 1.69836 1.06311 1.12258 1.15940 0.78386 0.81007 0.84061 1.90885 1.55945 1.82881 1.17450 1.45181 1.74007 1.04448 1.12804 1.20965 0.99247 0.85368 0.89314 1.19328 0.92882 0.88731 0.98660 1.21165 0.94043 1.49621 0.96432 0.92993 1.25733 1.02397 0.93671 0.95827 1.70703 1.28997 1.45385 1.08285 0.83569 0.75127 0.76928 0.74805 1.21548 1.21464 1.20968 1.22890 0.97518 1.05910 0.96776 1.22751 1.04031 0.99483 0.94577 1.21448 0.90604 0.81958 1.00290 0.85361 1.22329 0.99417 0.89007 1.06045 1.30449 1.23364 1.04411 1.13482 1.08887 0.78994 0.78675 0.75795 1.93644 1.63209 1.80696 1.55372 1.93620 1.85843 1.72322 1.41671 1.31178 1.08329 1.24949 1.09551 0.76653 0.87881 0.88047 0.76537 0.91990 0.94039 0.91218 0.90062 0.91393 0.91233 0.89512 0.89177 0.88208 0.84135 0.84111 0.83645 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 19.25 29.55 0.57 -1.43 16 2 C -0.22 -2.72 12.25 -37.12 -0.45 -3.18 16 3 C 0.22 2.30 4.88 -6.83 -0.03 2.27 16 4 N -0.62 -7.92 2.42 -173.37 -0.42 -8.34 16 5 C 0.70 12.56 8.20 -86.91 -0.71 11.84 16 6 O -0.59 -12.57 15.69 5.29 0.08 -12.48 16 7 N -0.71 -13.29 5.36 -65.23 -0.35 -13.64 16 8 C 0.17 3.81 5.42 -4.05 -0.02 3.79 16 9 C 0.00 0.11 0.94 -155.66 -0.15 -0.04 16 10 C -0.58 -14.45 8.60 -34.44 -0.30 -14.74 16 11 H 0.05 1.30 7.82 -52.49 -0.41 0.89 16 12 C 0.03 0.80 5.39 -17.82 -0.10 0.71 16 13 N -0.90 -25.35 13.57 55.43 0.75 -24.60 16 14 Si 1.07 23.62 29.91 -169.99 -5.08 18.54 16 15 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 C -0.19 -3.85 9.96 -26.69 -0.27 -4.12 16 19 C -0.17 -3.68 8.72 -26.69 -0.23 -3.91 16 20 C 0.16 1.68 2.96 -66.39 -0.20 1.49 16 21 H 0.13 1.51 6.95 -51.93 -0.36 1.15 16 22 C -0.13 -1.04 5.62 -25.65 -0.14 -1.18 16 23 C -0.59 -3.51 7.26 37.78 0.27 -3.23 16 24 S 2.39 19.24 6.10 -107.50 -0.66 18.58 16 25 O -0.93 -11.05 18.15 -57.73 -1.05 -12.10 16 26 O -0.94 -10.27 18.15 -57.73 -1.05 -11.32 16 27 C -0.61 -4.55 6.77 38.24 0.26 -4.30 16 28 H 0.22 2.04 7.80 -54.09 -0.42 1.62 16 29 H 0.10 0.70 6.33 -51.93 -0.33 0.37 16 30 H 0.10 1.05 6.40 -51.93 -0.33 0.71 16 31 H 0.40 6.91 6.09 -40.82 -0.25 6.66 16 32 H 0.06 1.55 7.88 -51.93 -0.41 1.14 16 33 H 0.04 0.89 8.06 -51.93 -0.42 0.47 16 34 H 0.28 7.75 6.24 -40.82 -0.25 7.50 16 35 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 39 H 0.09 0.66 6.42 -51.93 -0.33 0.32 16 40 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.14 0.59 8.14 -51.92 -0.42 0.17 16 43 H 0.15 1.03 8.14 -51.92 -0.42 0.61 16 44 H 0.14 0.77 6.39 -51.93 -0.33 0.43 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -36.19 378.41 -9.59 -45.78 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -6.03 Total: 9.91 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -1.50 Total: -16.03 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.02 Total: -46.58 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -2.01 Total: -35.90 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.08 Total: 18.54 kcal Atomic # 16 Polarization: 19.24 SS G_CDS: -0.66 Total: 18.58 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.19 -9.59 -45.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491242721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.173 kcal (2) G-P(sol) polarization free energy of solvation -36.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds