Wall clock time and date at job start Sat Apr 11 2020 05:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47100 * 2 1 4 4 H 1.08995 * 109.47567 * 302.64236 * 3 2 1 5 5 C 1.50697 * 109.46976 * 182.63687 * 3 2 1 6 6 H 1.08007 * 120.00243 * 239.99932 * 5 3 2 7 7 C 1.37881 * 119.99960 * 60.00844 * 5 3 2 8 8 N 1.31512 * 119.99778 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99959 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47178 * 90.00025 * 9 7 5 11 11 H 1.48504 * 109.47271 * 209.99593 * 9 7 5 12 12 H 1.48503 * 109.47530 * 330.00073 * 9 7 5 13 13 N 1.46504 * 109.46480 * 62.64108 * 3 2 1 14 14 S 1.65595 * 119.99812 * 233.66292 * 13 3 2 15 15 O 1.42098 * 106.40449 * 183.51628 * 14 13 3 16 16 O 1.42102 * 106.40200 * 50.59581 * 14 13 3 17 17 C 1.76197 * 107.22191 * 297.05778 * 14 13 3 18 18 C 1.38132 * 119.96888 * 116.70781 * 17 14 13 19 19 C 1.38853 * 119.93247 * 179.72486 * 18 17 14 20 20 N 1.39924 * 120.06894 * 180.02562 * 19 18 17 21 21 C 1.34781 * 120.00160 * 34.29946 * 20 19 18 22 22 C 1.50700 * 119.99917 * 185.09130 * 21 20 19 23 23 O 1.21290 * 119.99679 * 5.08277 * 21 20 19 24 24 C 1.38891 * 119.85690 * 0.02562 * 19 18 17 25 25 C 1.38082 * 119.93167 * 359.97438 * 24 19 18 26 26 C 1.38268 * 119.96367 * 296.43232 * 17 14 13 27 27 C 1.50698 * 119.92779 * 0.25611 * 26 17 14 28 28 H 1.09003 * 109.46743 * 53.21473 * 1 2 3 29 29 H 1.09000 * 109.46648 * 173.21478 * 1 2 3 30 30 H 1.08999 * 109.47095 * 293.21457 * 1 2 3 31 31 H 1.09000 * 109.47371 * 240.00278 * 2 1 3 32 32 H 1.08998 * 109.47130 * 120.00449 * 2 1 3 33 33 H 0.97004 * 119.99802 * 180.02562 * 8 7 5 34 34 H 0.97003 * 119.99899 * 53.67368 * 13 3 2 35 35 H 1.08001 * 120.03171 * 359.70667 * 18 17 14 36 36 H 0.96994 * 120.00091 * 214.28829 * 20 19 18 37 37 H 1.09005 * 109.47180 * 89.99763 * 22 21 20 38 38 H 1.09002 * 109.46674 * 209.99510 * 22 21 20 39 39 H 1.08998 * 109.47181 * 329.99400 * 22 21 20 40 40 H 1.08000 * 120.03257 * 180.02562 * 24 19 18 41 41 H 1.07999 * 119.96694 * 180.02562 * 25 24 19 42 42 H 1.08999 * 109.47587 * 83.91480 * 27 26 17 43 43 H 1.09002 * 109.46996 * 203.91784 * 27 26 17 44 44 H 1.08995 * 109.47202 * 323.91388 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6386 1.9699 -0.8653 5 6 3.5456 1.4430 -0.0654 6 1 4.1205 1.8984 0.7276 7 6 4.1893 0.8623 -1.1375 8 7 3.4893 0.3075 -2.1028 9 14 6.0554 0.8635 -1.2189 10 1 6.5804 -0.3592 -0.5597 11 1 6.4890 0.8851 -2.6391 12 1 6.5806 2.0655 -0.5226 13 7 1.6043 2.1144 1.2268 14 16 0.7804 3.5481 1.1377 15 8 0.5766 3.9778 2.4767 16 8 -0.2823 3.3437 0.2168 17 6 1.8613 4.7257 0.3964 18 6 1.5348 5.2918 -0.8206 19 6 2.3844 6.2239 -1.4013 20 7 2.0562 6.7995 -2.6337 21 6 0.7668 7.0425 -2.9421 22 6 0.4033 7.5550 -4.3118 23 8 -0.1009 6.8486 -2.1171 24 6 3.5606 6.5838 -0.7562 25 6 3.8813 6.0143 0.4601 26 6 3.0327 5.0865 1.0362 27 6 3.3856 4.4673 2.3640 28 1 -0.3633 0.6154 -0.8231 29 1 -0.3632 -1.0205 -0.1214 30 1 -0.3633 0.4051 0.9444 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.9422 -0.1014 -2.8570 34 1 1.7985 1.7195 2.0913 35 1 0.6198 5.0093 -1.3200 36 1 2.7566 7.0238 -3.2661 37 1 0.2135 6.7122 -4.9766 38 1 -0.4925 8.1722 -4.2428 39 1 1.2258 8.1513 -4.7068 40 1 4.2232 7.3089 -1.2052 41 1 4.7956 6.2940 0.9624 42 1 3.8742 3.5071 2.1989 43 1 4.0605 5.1299 2.9060 44 1 2.4775 4.3173 2.9478 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546567730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:13 Heat of formation + Delta-G solvation = -92.201746 kcal Electronic energy + Delta-G solvation = -29078.573995 eV Core-core repulsion = 25122.700251 eV Total energy + Delta-G solvation = -3955.873744 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.44296 -38.52432 -36.71154 -35.92410 -35.21882 -35.00094 -32.24702 -31.83605 -31.02562 -30.50024 -29.67663 -26.64255 -25.97768 -23.38224 -22.98902 -21.84399 -20.48730 -20.08654 -19.09950 -17.98440 -17.09741 -16.96661 -16.40991 -15.73724 -15.58535 -15.39431 -15.16571 -14.80668 -14.28828 -14.03699 -13.71594 -13.55358 -13.36213 -13.09545 -12.95688 -12.81692 -12.57131 -12.19493 -12.15590 -11.88865 -11.71118 -11.63874 -11.49740 -11.40806 -11.20720 -11.10146 -10.93245 -10.81118 -10.47412 -10.33809 -10.09728 -9.92103 -9.83430 -9.69652 -9.51904 -9.02118 -8.50854 -8.20251 -7.88638 -6.12900 -4.21216 1.00858 1.23455 1.50943 2.54662 3.03407 3.20492 3.28181 3.29630 3.64798 3.86487 4.32988 4.39397 4.61205 4.86800 4.99174 5.05869 5.14584 5.16894 5.20710 5.21935 5.49825 5.58072 5.68161 5.85691 5.95034 6.02189 6.23059 6.24669 6.29201 6.33983 6.39316 6.43667 6.53374 6.62641 6.66991 6.92229 7.11536 7.13356 7.25924 7.32650 7.60918 7.66832 7.90526 8.03126 8.06840 8.25542 8.81792 9.45090 10.91466 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009303 B = 0.005422 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.950154 B = 5162.856537 C = 5816.606274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.279 3.721 4 H 0.047 0.953 5 C -0.526 4.526 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 N -1.099 6.099 14 S 2.694 3.306 15 O -0.982 6.982 16 O -0.962 6.962 17 C -0.643 4.643 18 C -0.011 4.011 19 C 0.109 3.891 20 N -0.672 5.672 21 C 0.505 3.495 22 C -0.169 4.169 23 O -0.522 6.522 24 C -0.091 4.091 25 C -0.128 4.128 26 C 0.023 3.977 27 C -0.170 4.170 28 H 0.051 0.949 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.103 0.897 32 H 0.040 0.960 33 H 0.263 0.737 34 H 0.407 0.593 35 H 0.150 0.850 36 H 0.410 0.590 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.097 0.903 43 H 0.074 0.926 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 11.557 -1.300 11.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.175 3.825 4 H 0.065 0.935 5 C -0.566 4.566 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.859 5.859 14 S 2.783 3.217 15 O -0.972 6.972 16 O -0.952 6.952 17 C -0.729 4.729 18 C -0.032 4.032 19 C 0.015 3.985 20 N -0.319 5.319 21 C 0.293 3.707 22 C -0.229 4.229 23 O -0.397 6.397 24 C -0.111 4.111 25 C -0.147 4.147 26 C 0.021 3.979 27 C -0.226 4.226 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.121 0.879 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.240 0.760 35 H 0.168 0.832 36 H 0.246 0.754 37 H 0.118 0.882 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.115 0.885 43 H 0.093 0.907 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.356 11.594 -0.880 11.633 hybrid contribution 2.413 0.200 -0.642 2.504 sum 2.056 11.794 -1.521 12.069 Atomic orbital electron populations 1.21837 0.98705 0.99402 1.00700 1.21862 0.92256 0.99302 1.02980 1.18592 0.94051 0.90052 0.79764 0.93505 1.21480 0.91050 1.37462 1.06586 0.91798 1.24895 0.98233 0.95054 0.95476 1.69867 1.35137 1.37485 1.09907 0.86593 0.85689 0.78493 0.77215 1.20590 1.21305 1.19889 1.55463 1.76695 1.37491 1.16290 1.01726 0.73751 0.73188 0.73056 1.93475 1.85462 1.82360 1.35917 1.93556 1.51297 1.85150 1.65221 1.30740 1.14027 1.20480 1.07678 1.20810 0.99004 0.90603 0.92761 1.17630 0.96574 0.96446 0.87895 1.43550 1.08977 1.62136 1.17204 1.21050 0.81866 0.77298 0.90482 1.21878 1.04079 1.03477 0.93451 1.90795 1.47996 1.50642 1.50301 1.21006 0.96139 0.99043 0.94919 1.20868 0.99804 0.98370 0.95646 1.19429 0.90866 0.92660 0.94960 1.21587 1.04967 1.02499 0.93536 0.92971 0.94722 0.94561 0.87923 0.94167 0.92677 0.75957 0.83244 0.75393 0.88233 0.88562 0.90091 0.85499 0.85157 0.88504 0.90683 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.69 37.16 0.36 -2.70 16 2 C -0.12 -2.79 5.44 -26.73 -0.15 -2.94 16 3 C 0.28 6.49 2.30 -69.08 -0.16 6.33 16 4 H 0.05 1.22 7.64 -51.93 -0.40 0.82 16 5 C -0.53 -12.92 8.84 -34.44 -0.30 -13.23 16 6 H 0.06 1.51 7.04 -52.48 -0.37 1.14 16 7 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 8 N -0.89 -23.49 11.30 55.43 0.63 -22.86 16 9 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 N -1.10 -21.90 4.59 -5.88 -0.03 -21.93 16 14 S 2.69 55.40 4.92 -107.50 -0.53 54.87 16 15 O -0.98 -20.37 15.49 -57.17 -0.89 -21.26 16 16 O -0.96 -22.36 16.55 -57.17 -0.95 -23.30 16 17 C -0.64 -12.73 5.83 -39.61 -0.23 -12.96 16 18 C -0.01 -0.21 8.15 -39.39 -0.32 -0.53 16 19 C 0.11 1.77 6.26 -83.69 -0.52 1.25 16 20 N -0.67 -8.43 5.34 -9.86 -0.05 -8.48 16 21 C 0.50 6.79 7.67 -10.98 -0.08 6.70 16 22 C -0.17 -1.34 10.31 36.01 0.37 -0.96 16 23 O -0.52 -9.67 14.85 5.55 0.08 -9.59 16 24 C -0.09 -1.28 9.97 -39.40 -0.39 -1.67 16 25 C -0.13 -1.92 9.67 -39.61 -0.38 -2.30 16 26 C 0.02 0.40 5.88 -104.59 -0.61 -0.22 16 27 C -0.17 -2.62 9.20 36.00 0.33 -2.29 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.70 7.88 -51.93 -0.41 0.29 16 31 H 0.10 2.56 6.00 -51.93 -0.31 2.25 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.41 7.08 8.96 -34.47 -0.31 6.77 16 35 H 0.15 3.20 5.76 -52.49 -0.30 2.90 16 36 H 0.41 3.40 8.82 -40.82 -0.36 3.04 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.10 1.52 7.36 -51.93 -0.38 1.13 16 43 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 44 H 0.10 1.62 5.16 -51.93 -0.27 1.35 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -33.68 374.34 -9.35 -43.02 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.04 Total: 13.00 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -2.19 Total: -23.94 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.55 Total: -53.27 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -1.75 Total: -54.15 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 55.40 SS G_CDS: -0.53 Total: 54.87 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.68 -9.35 -43.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546567730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.180 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds