Wall clock time and date at job start Sat Apr 11 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47393 * 2 1 4 4 H 1.09007 * 109.46701 * 55.82778 * 3 2 1 5 5 C 1.50702 * 109.47068 * 175.82280 * 3 2 1 6 6 H 1.07990 * 120.00004 * 120.00336 * 5 3 2 7 7 C 1.37881 * 119.99943 * 300.00296 * 5 3 2 8 8 N 1.31519 * 120.00078 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 119.99859 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47280 * 90.00054 * 9 7 5 11 11 H 1.48505 * 109.47138 * 210.00030 * 9 7 5 12 12 H 1.48496 * 109.47116 * 329.99735 * 9 7 5 13 13 N 1.46500 * 109.47395 * 295.82500 * 3 2 1 14 14 S 1.65597 * 120.00085 * 117.43125 * 13 3 2 15 15 O 1.42101 * 106.40399 * 177.03767 * 14 13 3 16 16 O 1.42100 * 106.40429 * 309.95884 * 14 13 3 17 17 C 1.76201 * 107.21626 * 63.49801 * 14 13 3 18 18 C 1.38137 * 119.96275 * 244.17871 * 17 14 13 19 19 C 1.38855 * 119.92269 * 179.97438 * 18 17 14 20 20 N 1.39931 * 120.06767 * 180.02562 * 19 18 17 21 21 C 1.34776 * 119.99963 * 144.47318 * 20 19 18 22 22 C 1.50701 * 119.99970 * 184.33393 * 21 20 19 23 23 O 1.21286 * 120.00174 * 4.33938 * 21 20 19 24 24 C 1.38887 * 119.86389 * 0.02562 * 19 18 17 25 25 C 1.38091 * 119.92977 * 359.97438 * 24 19 18 26 26 C 1.38259 * 119.96735 * 63.90564 * 17 14 13 27 27 C 1.50705 * 119.92700 * 359.97438 * 26 17 14 28 28 H 1.08996 * 109.47223 * 60.39872 * 1 2 3 29 29 H 1.09003 * 109.46209 * 300.40192 * 1 2 3 30 30 H 1.08996 * 109.47406 * 180.41058 * 1 2 3 31 31 H 1.08998 * 109.47542 * 120.00587 * 2 1 3 32 32 H 1.09008 * 109.46684 * 240.00270 * 2 1 3 33 33 H 0.97001 * 119.99821 * 179.97438 * 8 7 5 34 34 H 0.97003 * 119.99609 * 297.43278 * 13 3 2 35 35 H 1.07993 * 120.03803 * 359.95414 * 18 17 14 36 36 H 0.97002 * 119.99986 * 324.48162 * 20 19 18 37 37 H 1.09005 * 109.46967 * 60.00035 * 22 21 20 38 38 H 1.08993 * 109.47070 * 180.02562 * 22 21 20 39 39 H 1.09004 * 109.47204 * 300.00415 * 22 21 20 40 40 H 1.07999 * 120.03462 * 180.02562 * 24 19 18 41 41 H 1.07997 * 119.96371 * 180.02562 * 25 24 19 42 42 H 1.09003 * 109.46587 * 92.30531 * 27 26 17 43 43 H 1.08994 * 109.47398 * 212.31012 * 27 26 17 44 44 H 1.09003 * 109.46996 * 332.30836 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6169 1.9774 0.8503 5 6 3.5435 1.4436 0.1035 6 1 4.1383 1.8919 -0.6785 7 6 4.1598 0.8724 1.1967 8 7 3.4355 0.3269 2.1493 9 14 6.0233 0.8745 1.3253 10 1 6.4696 2.1040 2.0284 11 1 6.4683 -0.3204 2.0867 12 1 6.6135 0.8413 -0.0369 13 7 1.6356 2.1035 -1.2432 14 16 0.6250 3.4143 -1.1932 15 8 0.4816 3.8619 -2.5342 16 8 -0.4763 3.0410 -0.3765 17 6 1.4735 4.6944 -0.3295 18 6 0.9821 5.1564 0.8760 19 6 1.6517 6.1649 1.5563 20 7 1.1569 6.6348 2.7779 21 6 2.0104 7.0078 3.7520 22 6 1.4802 7.4210 5.1008 23 8 3.2051 7.0111 3.5430 24 6 2.8137 6.7061 1.0216 25 6 3.2998 6.2399 -0.1839 26 6 2.6336 5.2315 -0.8562 27 6 3.1706 4.7203 -2.1683 28 1 -0.3633 0.5076 -0.8935 29 1 -0.3632 0.5201 0.8864 30 1 -0.3634 -1.0276 0.0074 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.8690 -0.0753 2.9182 34 1 1.9599 1.7733 -2.0958 35 1 0.0779 4.7341 1.2888 36 1 0.1996 6.6920 2.9237 37 1 0.9233 6.5939 5.5412 38 1 2.3125 7.6868 5.7524 39 1 0.8213 8.2815 4.9842 40 1 3.3370 7.4903 1.5486 41 1 4.2035 6.6601 -0.5999 42 1 2.7777 5.3284 -2.9832 43 1 4.2589 4.7789 -2.1631 44 1 2.8632 3.6838 -2.3076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546567731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:16 Heat of formation + Delta-G solvation = -114.435294 kcal Electronic energy + Delta-G solvation = -28896.772873 eV Core-core repulsion = 24939.935010 eV Total energy + Delta-G solvation = -3956.837863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61453 -39.76256 -38.35226 -37.69374 -36.87064 -36.20618 -34.15752 -33.06952 -32.34502 -32.17807 -30.55651 -28.53753 -27.20711 -24.85668 -24.61264 -22.96457 -21.95229 -21.87068 -20.42814 -19.33398 -18.82080 -18.24607 -18.06377 -17.17608 -16.93647 -16.72999 -16.64285 -16.27873 -15.70989 -15.37913 -15.16508 -14.90413 -14.78753 -14.65638 -14.64293 -13.69552 -13.51676 -13.51053 -13.47033 -13.33284 -13.22483 -13.10902 -13.04930 -12.97078 -12.84608 -12.69350 -12.66008 -12.57743 -12.15246 -11.92417 -11.73305 -11.50945 -11.40385 -11.29600 -10.98009 -10.47707 -10.31154 -9.95496 -9.18296 -8.09721 -6.22181 -0.49415 -0.16635 0.14109 1.41315 1.44660 1.46995 1.51321 2.00322 2.13298 2.43275 2.49175 2.83727 3.19272 3.50588 3.67875 3.79320 3.82699 3.99534 4.22438 4.34715 4.50322 4.50632 4.56049 4.62671 4.63914 4.69422 4.70323 4.75882 4.89319 4.93389 5.02979 5.06159 5.15363 5.16815 5.32452 5.33585 5.39695 5.49142 5.70139 5.82613 5.86029 6.09807 6.18655 6.36119 6.46694 6.87626 7.05939 7.46804 8.93874 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008638 B = 0.005586 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.656444 B = 5011.156840 C = 6258.021462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.290 3.710 4 H 0.018 0.982 5 C -0.530 4.530 6 H 0.069 0.931 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.289 1.289 11 H -0.285 1.285 12 H -0.261 1.261 13 N -1.096 6.096 14 S 2.708 3.292 15 O -0.984 6.984 16 O -0.985 6.985 17 C -0.665 4.665 18 C -0.054 4.054 19 C 0.105 3.895 20 N -0.663 5.663 21 C 0.501 3.499 22 C -0.161 4.161 23 O -0.578 6.578 24 C -0.075 4.075 25 C -0.130 4.130 26 C 0.004 3.996 27 C -0.144 4.144 28 H 0.044 0.956 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.262 0.738 34 H 0.418 0.582 35 H 0.149 0.851 36 H 0.430 0.570 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.159 0.841 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.157 12.768 0.014 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C 0.185 3.815 4 H 0.036 0.964 5 C -0.570 4.570 6 H 0.087 0.913 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.771 3.229 10 H -0.215 1.215 11 H -0.211 1.211 12 H -0.185 1.185 13 N -0.857 5.857 14 S 2.799 3.201 15 O -0.975 6.975 16 O -0.975 6.975 17 C -0.753 4.753 18 C -0.076 4.076 19 C 0.010 3.990 20 N -0.310 5.310 21 C 0.292 3.708 22 C -0.219 4.219 23 O -0.457 6.457 24 C -0.095 4.095 25 C -0.149 4.149 26 C 0.002 3.998 27 C -0.200 4.200 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.254 0.746 35 H 0.167 0.833 36 H 0.269 0.731 37 H 0.130 0.870 38 H 0.113 0.887 39 H 0.143 0.857 40 H 0.161 0.839 41 H 0.177 0.823 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.235 12.803 -0.052 13.832 hybrid contribution 1.306 -0.087 0.559 1.423 sum -3.930 12.716 0.508 13.319 Atomic orbital electron populations 1.21740 0.96910 1.00427 1.00634 1.21800 0.93853 0.98845 1.02036 1.18231 0.93623 0.90193 0.79471 0.96387 1.21734 0.92194 1.37064 1.06000 0.91305 1.25539 1.01622 0.95081 0.95591 1.69978 1.36279 1.38852 1.10003 0.85766 0.81658 0.76988 0.78511 1.21529 1.21067 1.18548 1.55321 1.68628 1.45695 1.16037 1.01189 0.73261 0.72983 0.72706 1.93527 1.86463 1.81995 1.35482 1.93510 1.50610 1.82583 1.70844 1.30610 1.12118 1.21961 1.10608 1.20757 1.00492 0.93202 0.93103 1.17810 0.96940 0.96220 0.88034 1.43539 1.11774 1.64088 1.11620 1.22052 0.85975 0.75051 0.87675 1.21959 1.04690 1.05401 0.89894 1.90716 1.18121 1.53886 1.83026 1.21621 0.94857 0.98689 0.94361 1.21350 1.01136 0.97460 0.94968 1.19778 0.90867 0.93112 0.96031 1.21313 1.03606 1.01857 0.93226 0.93697 0.94455 0.92634 0.90473 0.93388 0.92897 0.74635 0.83308 0.73062 0.87026 0.88699 0.85750 0.83895 0.82347 0.87860 0.88290 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.63 9.29 71.98 0.67 -4.97 16 2 C -0.13 -5.67 5.44 30.59 0.17 -5.50 16 3 C 0.29 13.52 2.26 44.25 0.10 13.62 16 4 H 0.02 0.95 7.75 -2.38 -0.02 0.94 16 5 C -0.53 -26.67 8.84 25.60 0.23 -26.44 16 6 H 0.07 3.32 7.81 -2.92 -0.02 3.30 16 7 C 0.02 1.14 5.29 84.65 0.45 1.59 16 8 N -0.91 -50.11 11.30 21.45 0.24 -49.86 16 9 Si 0.94 42.40 29.54 68.60 2.03 44.42 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 13 N -1.10 -42.45 3.59 -172.51 -0.62 -43.06 16 14 S 2.71 102.22 4.77 -56.49 -0.27 101.96 16 15 O -0.98 -37.49 16.51 -128.00 -2.11 -39.60 16 16 O -0.99 -40.86 15.66 -128.00 -2.00 -42.86 16 17 C -0.66 -24.29 5.85 22.25 0.13 -24.16 16 18 C -0.05 -1.86 9.47 22.39 0.21 -1.64 16 19 C 0.11 3.32 6.29 38.15 0.24 3.56 16 20 N -0.66 -15.52 5.34 -303.50 -1.62 -17.13 16 21 C 0.50 12.26 7.78 87.66 0.68 12.95 16 22 C -0.16 -1.99 10.32 71.24 0.74 -1.26 16 23 O -0.58 -20.02 14.56 -3.05 -0.04 -20.07 16 24 C -0.08 -2.41 8.69 22.39 0.19 -2.21 16 25 C -0.13 -4.01 9.70 22.25 0.22 -3.79 16 26 C 0.00 0.14 5.88 -19.84 -0.12 0.02 16 27 C -0.14 -4.17 8.83 71.24 0.63 -3.54 16 28 H 0.04 1.71 7.26 -2.39 -0.02 1.70 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.08 3.93 5.97 -2.39 -0.01 3.91 16 32 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 34 H 0.42 14.17 8.56 -96.74 -0.83 13.35 16 35 H 0.15 4.74 7.33 -2.91 -0.02 4.72 16 36 H 0.43 6.42 8.82 -92.71 -0.82 5.60 16 37 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.09 1.25 8.12 -2.39 -0.02 1.23 16 39 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.14 4.46 6.27 -2.91 -0.02 4.45 16 41 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 42 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.10 2.45 8.10 -2.39 -0.02 2.43 16 44 H 0.06 1.99 4.89 -2.39 -0.01 1.98 16 Total: -1.00 -72.17 372.62 -0.47 -72.64 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: -0.60 Total: 35.35 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 4.53 Total: -41.78 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -2.00 Total: -110.06 kcal Atomic # 8 Polarization: -98.37 SS G_CDS: -4.16 Total: -102.53 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 102.22 SS G_CDS: -0.27 Total: 101.96 kcal Total: -72.17 -0.47 -72.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546567731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.793 kcal (2) G-P(sol) polarization free energy of solvation -72.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds