Wall clock time and date at job start Sat Apr 11 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47103 * 2 1 4 4 N 1.46505 * 109.47268 * 119.99907 * 2 1 3 5 5 C 1.46497 * 120.00011 * 300.00083 * 4 2 1 6 6 C 1.50694 * 109.47093 * 270.00022 * 5 4 2 7 7 H 1.07998 * 120.00348 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99906 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00073 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00200 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46903 * 60.00105 * 10 8 6 12 12 H 1.48504 * 109.47323 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47285 * 300.00404 * 10 8 6 14 14 C 1.34777 * 119.99775 * 119.99866 * 4 2 1 15 15 O 1.21284 * 119.99617 * 179.97438 * 14 4 2 16 16 C 1.50705 * 120.00008 * 0.02562 * 14 4 2 17 17 N 1.46501 * 109.46813 * 179.97438 * 16 14 4 18 18 S 1.65601 * 119.99590 * 164.99711 * 17 16 14 19 19 O 1.42098 * 106.40290 * 311.46059 * 18 17 16 20 20 O 1.42107 * 106.39817 * 178.54092 * 18 17 16 21 21 C 1.76199 * 107.21620 * 65.00305 * 18 17 16 22 22 C 1.38237 * 119.99920 * 90.00183 * 21 18 17 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 18 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00031 * 269.97364 * 21 18 17 27 27 H 1.09003 * 109.46974 * 299.99924 * 1 2 3 28 28 H 1.08998 * 109.47322 * 60.00258 * 1 2 3 29 29 H 1.09000 * 109.46579 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47142 * 240.00287 * 2 1 3 31 31 H 1.08995 * 109.47117 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47263 * 300.00342 * 3 2 1 33 33 H 1.09003 * 109.47143 * 60.00180 * 3 2 1 34 34 H 1.09000 * 109.47209 * 30.00262 * 5 4 2 35 35 H 1.08997 * 109.46917 * 149.99494 * 5 4 2 36 36 H 0.96998 * 120.00244 * 179.97438 * 9 8 6 37 37 H 1.08997 * 109.46971 * 59.99852 * 16 14 4 38 38 H 1.08994 * 109.46893 * 299.99698 * 16 14 4 39 39 H 0.97000 * 120.00223 * 345.00634 * 17 16 14 40 40 H 1.08005 * 120.00088 * 359.96860 * 22 21 18 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99990 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6645 -0.1901 2.5268 6 6 2.7032 0.8018 2.9830 7 1 3.5427 1.0363 2.3454 8 6 2.5817 1.4100 4.2144 9 7 1.5590 1.1248 4.9906 10 14 3.8695 2.6391 4.7802 11 1 3.9250 3.7736 3.8237 12 1 3.5114 3.1456 6.1295 13 1 5.1964 1.9747 4.8376 14 6 2.7932 -1.7864 1.0725 15 8 3.1979 -2.3578 2.0628 16 6 3.1577 -2.3010 -0.2963 17 7 4.0004 -3.4918 -0.1619 18 16 4.2472 -4.4828 -1.4654 19 8 2.9657 -4.7379 -2.0239 20 8 5.1227 -5.5125 -1.0265 21 6 5.1375 -3.5515 -2.6674 22 6 6.5198 -3.5573 -2.6612 23 6 7.2183 -2.8262 -3.6038 24 6 6.5344 -2.0903 -4.5533 25 6 5.1521 -2.0806 -4.5565 26 6 4.4537 -2.8156 -3.6169 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 0.6905 0.2973 2.4844 35 1 1.6238 -1.0226 3.2291 36 1 1.4737 1.5524 5.8571 37 1 3.7029 -1.5301 -0.8409 38 1 2.2496 -2.5577 -0.8416 39 1 4.4136 -3.6998 0.6907 40 1 7.0541 -4.1323 -1.9193 41 1 8.2982 -2.8304 -3.5987 42 1 7.0802 -1.5195 -5.2901 43 1 4.6178 -1.5021 -5.2956 44 1 3.3737 -2.8111 -3.6218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566071302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:27 Heat of formation + Delta-G solvation = -80.964636 kcal Electronic energy + Delta-G solvation = -27970.468471 eV Core-core repulsion = 24015.082004 eV Total energy + Delta-G solvation = -3955.386467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.45664 -39.36967 -37.33948 -36.25595 -35.95546 -34.58312 -32.84287 -31.61426 -31.36251 -30.94890 -28.48339 -26.82351 -26.02275 -23.53036 -23.07941 -22.74802 -21.40294 -19.73083 -18.61873 -18.37589 -17.63261 -16.55983 -16.48171 -16.28859 -16.12975 -15.59870 -15.20414 -14.87581 -14.78993 -14.54023 -13.90325 -13.82902 -13.54530 -13.45275 -13.32367 -13.07744 -12.57188 -12.43335 -12.23271 -12.16415 -12.13598 -12.10477 -11.73018 -11.60607 -11.59756 -11.24560 -11.01485 -10.98824 -10.90120 -10.63495 -10.44052 -10.08141 -9.79210 -9.68353 -9.60747 -9.38124 -9.07613 -8.45380 -7.77005 -6.07152 -4.10872 0.20331 0.54166 0.95836 2.80828 3.19442 3.24059 3.28601 3.34063 3.36942 3.65918 3.76668 4.15917 4.41188 4.54337 4.54937 4.62985 4.74003 4.96688 5.06792 5.11970 5.23802 5.27591 5.30922 5.33520 5.50433 5.54541 5.57944 5.59578 5.75679 5.87375 5.96599 6.00142 6.10235 6.20615 6.30914 6.48428 6.54319 6.88894 6.97098 7.04447 7.41151 7.46854 7.88715 8.20041 8.30649 8.81252 8.96751 9.53163 11.01041 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.003247 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.566972 B = 8620.142152 C = 8780.880337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.130 3.870 3 C -0.157 4.157 4 N -0.588 5.588 5 C 0.246 3.754 6 C -0.522 4.522 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.505 3.495 15 O -0.532 6.532 16 C 0.094 3.906 17 N -1.101 6.101 18 S 2.700 3.300 19 O -0.956 6.956 20 O -0.956 6.956 21 C -0.677 4.677 22 C -0.018 4.018 23 C -0.142 4.142 24 C -0.065 4.065 25 C -0.141 4.141 26 C -0.022 4.022 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.430 0.570 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.476 -4.095 -20.809 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.025 3.975 3 C -0.215 4.215 4 N -0.320 5.320 5 C 0.127 3.873 6 C -0.561 4.561 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.203 1.203 14 C 0.289 3.711 15 O -0.409 6.409 16 C -0.036 4.036 17 N -0.865 5.865 18 S 2.789 3.211 19 O -0.946 6.946 20 O -0.947 6.947 21 C -0.763 4.763 22 C -0.037 4.037 23 C -0.161 4.161 24 C -0.084 4.084 25 C -0.160 4.160 26 C -0.041 4.041 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.269 0.731 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.226 -5.146 -20.316 21.600 hybrid contribution 1.296 1.458 0.358 1.983 sum 6.521 -3.688 -19.959 21.318 Atomic orbital electron populations 1.22170 0.95216 1.02093 1.02660 1.21070 0.94513 0.94326 0.87585 1.22144 1.01355 0.95498 1.02535 1.48327 1.48648 1.25933 1.09072 1.19289 0.96053 0.95081 0.76861 1.21371 1.08959 1.23584 1.02154 0.92392 1.24919 0.95724 0.97097 0.96329 1.69916 1.29446 1.43257 1.10698 0.86605 0.82020 0.81237 0.77806 1.20294 1.21239 1.20283 1.20003 0.79838 0.81418 0.89845 1.90672 1.53407 1.58007 1.38851 1.21211 0.95810 0.87931 0.98627 1.55214 1.63177 1.40441 1.27669 1.01712 0.73863 0.72903 0.72666 1.93584 1.39305 1.83192 1.78555 1.93598 1.67135 1.52942 1.80991 1.31048 1.06780 1.19604 1.18911 1.20987 0.92002 0.94017 0.96674 1.21330 1.00553 0.98203 0.95971 1.21519 0.94685 0.95496 0.96673 1.21325 0.94555 1.00350 0.99741 1.21006 1.00440 0.91132 0.91569 0.91155 0.92072 0.92656 0.90816 0.92714 0.93096 0.89892 0.94509 0.93913 0.92675 0.89314 0.87879 0.73123 0.84111 0.84991 0.85238 0.84901 0.84049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.17 37.16 0.34 -1.87 16 2 C 0.13 1.92 3.17 -67.93 -0.22 1.70 16 3 C -0.16 -2.37 8.47 37.16 0.31 -2.05 16 4 N -0.59 -11.48 2.39 -167.47 -0.40 -11.88 16 5 C 0.25 6.04 4.59 -5.20 -0.02 6.02 16 6 C -0.52 -13.89 7.83 -34.44 -0.27 -14.16 16 7 H 0.06 1.53 7.63 -52.49 -0.40 1.13 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 10 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.50 9.76 7.74 -10.98 -0.09 9.68 16 15 O -0.53 -12.51 15.31 5.55 0.09 -12.42 16 16 C 0.09 1.30 5.01 -5.19 -0.03 1.28 16 17 N -1.10 -14.97 5.93 -11.66 -0.07 -15.04 16 18 S 2.70 34.35 5.74 -107.50 -0.62 33.74 16 19 O -0.96 -13.94 16.75 -57.17 -0.96 -14.90 16 20 O -0.96 -14.36 17.28 -57.17 -0.99 -15.35 16 21 C -0.68 -7.29 5.95 -39.58 -0.24 -7.52 16 22 C -0.02 -0.17 9.52 -39.58 -0.38 -0.55 16 23 C -0.14 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.07 -0.48 10.05 -39.58 -0.40 -0.88 16 25 C -0.14 -1.10 10.05 -39.58 -0.40 -1.50 16 26 C -0.02 -0.21 9.52 -39.58 -0.38 -0.59 16 27 H 0.07 1.10 6.66 -51.93 -0.35 0.75 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.85 5.77 -51.93 -0.30 0.55 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.51 6.92 -51.93 -0.36 1.15 16 34 H 0.04 0.91 6.43 -51.93 -0.33 0.58 16 35 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.09 0.99 7.79 -51.93 -0.40 0.59 16 38 H 0.10 1.21 7.40 -51.93 -0.38 0.83 16 39 H 0.43 6.22 7.70 -34.47 -0.27 5.95 16 40 H 0.14 1.27 7.62 -52.48 -0.40 0.87 16 41 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.14 1.13 7.62 -52.49 -0.40 0.73 16 LS Contribution 378.13 15.07 5.70 5.70 Total: -1.00 -35.28 378.13 -9.85 -45.12 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.07 Total: 4.25 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.24 Total: -10.41 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.27 Total: -51.93 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.86 Total: -42.67 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 34.35 SS G_CDS: -0.62 Total: 33.74 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.28 -9.85 -45.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566071302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.840 kcal (2) G-P(sol) polarization free energy of solvation -35.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds