Wall clock time and date at job start Sat Apr 11 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47103 * 2 1 4 4 N 1.46505 * 109.47268 * 119.99907 * 2 1 3 5 5 C 1.46497 * 120.00011 * 300.00083 * 4 2 1 6 6 C 1.50694 * 109.47093 * 270.00022 * 5 4 2 7 7 H 1.07998 * 120.00348 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99906 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00073 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00200 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46903 * 60.00105 * 10 8 6 12 12 H 1.48504 * 109.47323 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47285 * 300.00404 * 10 8 6 14 14 C 1.34777 * 119.99775 * 119.99866 * 4 2 1 15 15 O 1.21284 * 119.99617 * 179.97438 * 14 4 2 16 16 C 1.50705 * 120.00008 * 0.02562 * 14 4 2 17 17 N 1.46501 * 109.46813 * 179.97438 * 16 14 4 18 18 S 1.65601 * 119.99590 * 164.99711 * 17 16 14 19 19 O 1.42098 * 106.40290 * 311.46059 * 18 17 16 20 20 O 1.42107 * 106.39817 * 178.54092 * 18 17 16 21 21 C 1.76199 * 107.21620 * 65.00305 * 18 17 16 22 22 C 1.38237 * 119.99920 * 90.00183 * 21 18 17 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 18 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00031 * 269.97364 * 21 18 17 27 27 H 1.09003 * 109.46974 * 299.99924 * 1 2 3 28 28 H 1.08998 * 109.47322 * 60.00258 * 1 2 3 29 29 H 1.09000 * 109.46579 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47142 * 240.00287 * 2 1 3 31 31 H 1.08995 * 109.47117 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47263 * 300.00342 * 3 2 1 33 33 H 1.09003 * 109.47143 * 60.00180 * 3 2 1 34 34 H 1.09000 * 109.47209 * 30.00262 * 5 4 2 35 35 H 1.08997 * 109.46917 * 149.99494 * 5 4 2 36 36 H 0.96998 * 120.00244 * 179.97438 * 9 8 6 37 37 H 1.08997 * 109.46971 * 59.99852 * 16 14 4 38 38 H 1.08994 * 109.46893 * 299.99698 * 16 14 4 39 39 H 0.97000 * 120.00223 * 345.00634 * 17 16 14 40 40 H 1.08005 * 120.00088 * 359.96860 * 22 21 18 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99990 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6645 -0.1901 2.5268 6 6 2.7032 0.8018 2.9830 7 1 3.5427 1.0363 2.3454 8 6 2.5817 1.4100 4.2144 9 7 1.5590 1.1248 4.9906 10 14 3.8695 2.6391 4.7802 11 1 3.9250 3.7736 3.8237 12 1 3.5114 3.1456 6.1295 13 1 5.1964 1.9747 4.8376 14 6 2.7932 -1.7864 1.0725 15 8 3.1979 -2.3578 2.0628 16 6 3.1577 -2.3010 -0.2963 17 7 4.0004 -3.4918 -0.1619 18 16 4.2472 -4.4828 -1.4654 19 8 2.9657 -4.7379 -2.0239 20 8 5.1227 -5.5125 -1.0265 21 6 5.1375 -3.5515 -2.6674 22 6 6.5198 -3.5573 -2.6612 23 6 7.2183 -2.8262 -3.6038 24 6 6.5344 -2.0903 -4.5533 25 6 5.1521 -2.0806 -4.5565 26 6 4.4537 -2.8156 -3.6169 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 0.6905 0.2973 2.4844 35 1 1.6238 -1.0226 3.2291 36 1 1.4737 1.5524 5.8571 37 1 3.7029 -1.5301 -0.8409 38 1 2.2496 -2.5577 -0.8416 39 1 4.4136 -3.6998 0.6907 40 1 7.0541 -4.1323 -1.9193 41 1 8.2982 -2.8304 -3.5987 42 1 7.0802 -1.5195 -5.2901 43 1 4.6178 -1.5021 -5.2956 44 1 3.3737 -2.8111 -3.6218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566071302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:26 Heat of formation + Delta-G solvation = -106.832552 kcal Electronic energy + Delta-G solvation = -27971.590188 eV Core-core repulsion = 24015.082004 eV Total energy + Delta-G solvation = -3956.508184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.95030 -40.00257 -38.42386 -37.71253 -37.04019 -35.80640 -34.84631 -32.42995 -32.25448 -31.96846 -30.16739 -28.01942 -27.54751 -24.64203 -24.20880 -23.67757 -22.73260 -20.69771 -19.97364 -19.27357 -18.75871 -18.57564 -17.60178 -17.51437 -17.02562 -16.81825 -16.47451 -16.36211 -15.68700 -15.50969 -15.26040 -14.83661 -14.76354 -14.50201 -14.41718 -14.10485 -13.95890 -13.66493 -13.41213 -13.30898 -13.26336 -13.22645 -13.20826 -13.13224 -12.80567 -12.69690 -12.50376 -12.20074 -12.18345 -12.06944 -11.79535 -11.64734 -11.50700 -10.84181 -10.59545 -10.56291 -10.38549 -9.99697 -9.44621 -8.17370 -6.28825 -0.74427 -0.16956 0.34814 1.37852 1.41551 1.48117 1.72849 1.83831 2.28764 2.44304 2.52240 2.76249 3.13051 3.24905 3.46747 3.86169 3.97095 3.99057 4.14512 4.16127 4.25758 4.35164 4.39265 4.43478 4.45333 4.54454 4.73929 4.89964 4.93127 4.99921 5.06148 5.10566 5.12360 5.16457 5.26559 5.31015 5.42707 5.48019 5.61471 5.67376 5.82675 5.88210 5.90848 6.12677 6.73111 6.81698 7.29359 7.44867 8.89946 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.003247 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.566972 B = 8620.142152 C = 8780.880337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 C -0.152 4.152 4 N -0.592 5.592 5 C 0.263 3.737 6 C -0.524 4.524 7 H 0.058 0.942 8 C 0.007 3.993 9 N -0.931 5.931 10 Si 0.960 3.040 11 H -0.260 1.260 12 H -0.284 1.284 13 H -0.280 1.280 14 C 0.494 3.506 15 O -0.587 6.587 16 C 0.102 3.898 17 N -1.108 6.108 18 S 2.715 3.285 19 O -0.978 6.978 20 O -0.987 6.987 21 C -0.683 4.683 22 C -0.040 4.040 23 C -0.147 4.147 24 C -0.062 4.062 25 C -0.140 4.140 26 C -0.035 4.035 27 H 0.038 0.962 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.121 0.879 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.042 0.958 34 H 0.028 0.972 35 H -0.007 1.007 36 H 0.264 0.736 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.424 0.576 40 H 0.138 0.862 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.163 0.837 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.570 -2.348 -24.730 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.017 3.983 3 C -0.210 4.210 4 N -0.323 5.323 5 C 0.142 3.858 6 C -0.563 4.563 7 H 0.076 0.924 8 C -0.192 4.192 9 N -0.571 5.571 10 Si 0.785 3.215 11 H -0.184 1.184 12 H -0.209 1.209 13 H -0.206 1.206 14 C 0.280 3.720 15 O -0.467 6.467 16 C -0.027 4.027 17 N -0.870 5.870 18 S 2.808 3.192 19 O -0.968 6.968 20 O -0.978 6.978 21 C -0.774 4.774 22 C -0.059 4.059 23 C -0.166 4.166 24 C -0.080 4.080 25 C -0.159 4.159 26 C -0.054 4.054 27 H 0.057 0.943 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.139 0.861 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.011 0.989 36 H 0.073 0.927 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.262 0.738 40 H 0.156 0.844 41 H 0.171 0.829 42 H 0.179 0.821 43 H 0.180 0.820 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.283 -3.403 -24.264 25.295 hybrid contribution 0.974 0.920 1.460 1.982 sum 7.257 -2.483 -22.804 24.059 Atomic orbital electron populations 1.22152 0.94219 1.02377 1.02999 1.21547 0.95443 0.94391 0.86945 1.22087 1.00853 0.95489 1.02602 1.48341 1.48749 1.26466 1.08735 1.18688 0.95429 0.92713 0.78982 1.21634 1.09020 1.23451 1.02216 0.92414 1.25781 0.97702 0.99099 0.96597 1.70047 1.31350 1.44633 1.11093 0.85589 0.78960 0.79301 0.77683 1.18414 1.20933 1.20556 1.20984 0.78682 0.80660 0.91625 1.90643 1.55278 1.59518 1.41299 1.21321 0.97574 0.88816 0.94982 1.55252 1.63416 1.40519 1.27850 1.00964 0.73219 0.72602 0.72404 1.93544 1.40668 1.83803 1.78745 1.93551 1.67715 1.54716 1.81773 1.30561 1.06885 1.20918 1.19024 1.21168 0.91995 0.95015 0.97726 1.21661 1.01823 0.97605 0.95501 1.21977 0.94908 0.94615 0.96474 1.21726 0.94959 0.99703 0.99519 1.21300 1.01330 0.91154 0.91628 0.94289 0.88182 0.92441 0.86149 0.93397 0.88937 0.93850 0.95365 0.98932 0.92702 0.85690 0.85161 0.73848 0.84391 0.82870 0.82088 0.81953 0.82775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 9.17 71.98 0.66 -3.34 16 2 C 0.12 3.26 3.17 44.99 0.14 3.40 16 3 C -0.15 -4.24 8.47 71.98 0.61 -3.63 16 4 N -0.59 -23.26 2.39 -802.14 -1.91 -25.18 16 5 C 0.26 13.57 4.59 85.63 0.39 13.96 16 6 C -0.52 -28.75 7.83 25.60 0.20 -28.55 16 7 H 0.06 3.09 7.63 -2.91 -0.02 3.07 16 8 C 0.01 0.38 5.46 84.65 0.46 0.84 16 9 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 10 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 11 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 14 C 0.49 19.23 7.74 87.66 0.68 19.91 16 15 O -0.59 -28.90 15.31 -3.04 -0.05 -28.94 16 16 C 0.10 2.63 5.01 85.63 0.43 3.06 16 17 N -1.11 -29.80 5.93 -190.79 -1.13 -30.93 16 18 S 2.71 67.85 5.74 -56.49 -0.32 67.53 16 19 O -0.98 -27.54 16.75 -128.00 -2.14 -29.69 16 20 O -0.99 -30.35 17.28 -128.00 -2.21 -32.56 16 21 C -0.68 -13.48 5.95 22.27 0.13 -13.35 16 22 C -0.04 -0.73 9.52 22.27 0.21 -0.52 16 23 C -0.15 -1.98 10.05 22.27 0.22 -1.75 16 24 C -0.06 -0.64 10.05 22.27 0.22 -0.42 16 25 C -0.14 -1.56 10.05 22.27 0.22 -1.34 16 26 C -0.03 -0.54 9.52 22.27 0.21 -0.32 16 27 H 0.04 1.22 6.66 -2.39 -0.02 1.20 16 28 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.12 2.20 5.77 -2.39 -0.01 2.19 16 31 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.04 1.55 6.92 -2.39 -0.02 1.54 16 34 H 0.03 1.49 6.43 -2.39 -0.02 1.48 16 35 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 36 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 37 H 0.13 2.33 7.79 -2.39 -0.02 2.31 16 38 H 0.13 2.65 7.40 -2.39 -0.02 2.64 16 39 H 0.42 12.75 7.70 -96.74 -0.75 12.00 16 40 H 0.14 2.48 7.62 -2.91 -0.02 2.46 16 41 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 42 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 43 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 44 H 0.15 1.89 7.62 -2.91 -0.02 1.87 16 Total: -1.00 -82.00 378.13 -0.38 -82.38 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.27 Total: 18.68 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 4.80 Total: -12.06 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -2.76 Total: -111.43 kcal Atomic # 8 Polarization: -86.79 SS G_CDS: -4.40 Total: -91.19 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 67.85 SS G_CDS: -0.32 Total: 67.53 kcal Total: -82.00 -0.38 -82.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566071302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.450 kcal (2) G-P(sol) polarization free energy of solvation -82.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds