Wall clock time and date at job start Sat Apr 11 2020 05:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45199 * 109.46998 * 2 1 4 4 C 1.34886 * 116.99928 * 180.02562 * 3 2 1 5 5 O 1.21645 * 119.99859 * 359.97438 * 4 3 2 6 6 C 1.46433 * 120.00101 * 179.97438 * 4 3 2 7 7 C 1.44688 * 123.61214 * 0.15699 * 6 4 3 8 8 C 1.32506 * 113.16518 * 180.29058 * 7 6 4 9 9 S 1.75448 * 110.83998 * 359.76104 * 8 7 6 10 10 C 1.37186 * 123.60978 * 179.97438 * 6 4 3 11 11 N 1.38612 * 124.66262 * 359.97438 * 10 6 4 12 12 C 1.34775 * 119.99876 * 179.72138 * 11 10 6 13 13 O 1.21278 * 120.00114 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00062 * 180.02562 * 12 11 10 15 15 N 1.46891 * 109.47532 * 179.97438 * 14 12 11 16 16 C 1.46900 * 111.00352 * 184.03870 * 15 14 12 17 17 H 1.08998 * 109.47053 * 327.04208 * 16 15 14 18 18 C 1.50703 * 109.47313 * 207.03461 * 16 15 14 19 19 H 1.07993 * 119.99903 * 356.65109 * 18 16 15 20 20 C 1.37883 * 119.99767 * 176.64478 * 18 16 15 21 21 N 1.31512 * 119.99940 * 352.47354 * 20 18 16 22 22 Si 1.86793 * 119.99653 * 172.46477 * 20 18 16 23 23 H 1.48504 * 109.47244 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.47674 * 300.00506 * 22 20 18 25 25 H 1.48503 * 109.47146 * 60.00635 * 22 20 18 26 26 C 1.53005 * 109.46857 * 87.03473 * 16 15 14 27 27 C 1.53009 * 109.46671 * 65.56668 * 26 16 15 28 28 H 1.08997 * 109.47054 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47068 * 300.00547 * 1 2 3 30 30 H 1.08999 * 109.46800 * 59.99897 * 1 2 3 31 31 H 1.09000 * 109.47122 * 239.99958 * 2 1 3 32 32 H 1.08999 * 109.46800 * 120.00103 * 2 1 3 33 33 H 1.08003 * 123.41662 * 0.04883 * 7 6 4 34 34 H 1.08002 * 124.57627 * 179.78051 * 8 7 6 35 35 H 0.97000 * 119.99670 * 359.71599 * 11 10 6 36 36 H 1.09007 * 109.47293 * 59.99026 * 14 12 11 37 37 H 1.09003 * 109.46985 * 299.99944 * 14 12 11 38 38 H 1.00900 * 111.00272 * 307.99956 * 15 14 12 39 39 H 0.96995 * 120.00341 * 355.70826 * 21 20 18 40 40 H 1.08997 * 109.47094 * 185.56245 * 26 16 15 41 41 H 1.08996 * 109.47386 * 305.57013 * 26 16 15 42 42 H 1.08999 * 109.47094 * 63.32149 * 27 26 16 43 43 H 1.09000 * 109.46490 * 183.32383 * 27 26 16 44 44 H 1.09003 * 109.46846 * 303.32118 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3513 1.5457 -0.0005 5 8 4.0923 0.5810 -0.0005 6 6 3.9110 2.8988 -0.0011 7 6 3.1037 4.0995 0.0021 8 6 3.8237 5.2118 -0.0053 9 16 5.5394 4.8447 -0.0099 10 6 5.2570 3.1639 -0.0012 11 7 6.2507 2.1975 -0.0002 12 6 7.5475 2.5645 -0.0060 13 8 7.8450 3.7402 -0.0126 14 6 8.6280 1.5139 -0.0055 15 7 9.9445 2.1654 -0.0131 16 6 11.0227 1.1724 -0.1095 17 1 10.7241 0.2605 0.4076 18 6 12.2724 1.7244 0.5267 19 1 12.2822 2.7337 0.9108 20 6 13.4033 0.9408 0.6184 21 7 13.3505 -0.3310 0.2880 22 14 15.0101 1.6859 1.2116 23 1 16.0667 0.6424 1.2190 24 1 15.4105 2.7886 0.3011 25 1 14.8309 2.2192 2.5859 26 6 11.2961 0.8576 -1.5816 27 6 11.8476 2.1047 -2.2758 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0237 4.0901 0.0060 34 1 3.4103 6.2096 -0.0079 35 1 6.0128 1.2572 0.0048 36 1 8.5271 0.8886 -0.8926 37 1 8.5332 0.8958 0.8873 38 1 10.0087 2.8424 -0.7586 39 1 12.5034 -0.7329 0.0396 40 1 12.0254 0.0506 -1.6512 41 1 10.3688 0.5523 -2.0662 42 1 12.8046 2.3756 -1.8297 43 1 11.9868 1.8981 -3.3369 44 1 11.1443 2.9286 -2.1552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584299289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:45 Heat of formation + Delta-G solvation = -93.987126 kcal Electronic energy + Delta-G solvation = -26825.897942 eV Core-core repulsion = 22869.946778 eV Total energy + Delta-G solvation = -3955.951164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89474 -40.12997 -37.78472 -36.68864 -36.53027 -34.75143 -32.86564 -32.03579 -30.88641 -29.38555 -27.32108 -25.77698 -24.43777 -23.58169 -23.15620 -21.91122 -21.44064 -20.26521 -19.63875 -18.56487 -17.70687 -17.20973 -16.81105 -16.60337 -15.98990 -15.87531 -15.47656 -14.82559 -14.51878 -14.39332 -14.10947 -13.77944 -13.62182 -13.50216 -13.30021 -13.14037 -13.09601 -12.46416 -12.39429 -12.26080 -12.14971 -11.92696 -11.80881 -11.27950 -11.15047 -11.06704 -10.83353 -10.76947 -10.74440 -10.34462 -10.15556 -10.07285 -9.91171 -9.85816 -8.70736 -8.66567 -8.36304 -8.29629 -7.49060 -6.32624 -4.01537 0.46854 1.05327 1.65193 1.82387 2.37250 2.55309 2.70272 2.95248 3.47201 3.47726 3.66597 4.49912 4.52469 4.58178 4.62906 4.68000 4.79067 4.92414 4.94236 5.04615 5.32900 5.36107 5.40450 5.48942 5.51935 5.59393 5.60130 5.76663 5.95087 6.05026 6.05838 6.09569 6.17928 6.27001 6.63107 6.82667 6.91876 7.00514 7.18988 7.27472 7.53612 7.74103 7.79021 8.18262 8.30758 8.62387 8.88938 9.65322 11.03165 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.002412 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.147241 B =11606.023295 C =12652.755983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.351 6.351 4 C 0.542 3.458 5 O -0.530 6.530 6 C -0.244 4.244 7 C -0.064 4.064 8 C -0.302 4.302 9 S 0.317 5.683 10 C 0.099 3.901 11 N -0.630 5.630 12 C 0.505 3.495 13 O -0.483 6.483 14 C 0.047 3.953 15 N -0.660 5.660 16 C 0.205 3.795 17 H 0.027 0.973 18 C -0.570 4.570 19 H 0.058 0.942 20 C 0.019 3.981 21 N -0.915 5.915 22 Si 1.065 2.935 23 H -0.285 1.285 24 H -0.288 1.288 25 H -0.288 1.288 26 C -0.153 4.153 27 C -0.129 4.129 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.431 0.569 36 H 0.058 0.942 37 H 0.105 0.895 38 H 0.340 0.660 39 H 0.267 0.733 40 H 0.072 0.928 41 H 0.019 0.981 42 H 0.070 0.930 43 H 0.027 0.973 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.178 5.198 -2.504 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.267 6.267 4 C 0.389 3.611 5 O -0.422 6.422 6 C -0.262 4.262 7 C -0.092 4.092 8 C -0.437 4.437 9 S 0.577 5.423 10 C -0.123 4.123 11 N -0.279 5.279 12 C 0.293 3.707 13 O -0.356 6.356 14 C -0.086 4.086 15 N -0.293 5.293 16 C 0.097 3.903 17 H 0.044 0.956 18 C -0.608 4.608 19 H 0.076 0.924 20 C -0.184 4.184 21 N -0.552 5.552 22 Si 0.894 3.106 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.215 1.215 26 C -0.193 4.193 27 C -0.186 4.186 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.168 0.832 34 H 0.186 0.814 35 H 0.275 0.725 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.160 0.840 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.038 0.962 42 H 0.089 0.911 43 H 0.046 0.954 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -21.768 6.248 -1.562 22.701 hybrid contribution -3.353 -1.678 -1.193 3.935 sum -25.121 4.569 -2.755 25.681 Atomic orbital electron populations 1.21806 0.92556 1.03018 1.03532 1.23041 0.95322 0.80060 1.02770 1.86576 1.23511 1.32228 1.84433 1.20130 0.80509 0.88513 0.71995 1.90721 1.60098 1.42524 1.48828 1.18872 0.90033 0.92195 1.25071 1.20788 1.00355 0.89021 0.99028 1.25958 1.00510 1.03001 1.14262 1.84542 1.00210 0.89742 1.67765 1.22340 0.90864 0.99016 1.00079 1.43634 1.04182 1.10726 1.69391 1.21771 0.82612 0.91708 0.74650 1.90605 1.80502 1.18705 1.45792 1.21844 0.89885 0.93854 1.03014 1.60683 0.98405 1.17231 1.53000 1.19404 0.89494 0.90421 0.91008 0.95559 1.21794 0.96161 1.01863 1.41012 0.92377 1.25721 1.02470 0.95017 0.95231 1.70819 1.29316 1.11688 1.43342 0.83591 0.75510 0.75166 0.76344 1.21016 1.21463 1.21476 1.22240 0.98579 0.99082 0.99359 1.21558 1.02318 0.97435 0.97331 0.90173 0.91438 0.91465 0.91146 0.91110 0.83223 0.81412 0.72464 0.92408 0.87742 0.83959 0.92129 0.90993 0.96239 0.91053 0.95410 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 37.16 0.38 -0.45 16 2 C 0.06 0.51 6.20 37.16 0.23 0.74 16 3 O -0.35 -3.78 9.95 -41.00 -0.41 -4.19 16 4 C 0.54 6.92 7.91 34.03 0.27 7.19 16 5 O -0.53 -7.58 14.24 -19.38 -0.28 -7.86 16 6 C -0.24 -3.03 6.00 -104.44 -0.63 -3.65 16 7 C -0.06 -0.64 10.13 -38.95 -0.39 -1.04 16 8 C -0.30 -2.83 11.09 28.82 0.32 -2.51 16 9 S 0.32 3.80 19.96 -107.50 -2.15 1.66 16 10 C 0.10 1.33 6.98 -14.86 -0.10 1.23 16 11 N -0.63 -8.84 5.33 -11.61 -0.06 -8.90 16 12 C 0.50 8.04 7.82 -10.99 -0.09 7.95 16 13 O -0.48 -8.62 13.53 5.56 0.08 -8.54 16 14 C 0.05 0.79 5.95 -4.98 -0.03 0.76 16 15 N -0.66 -13.80 5.94 -109.22 -0.65 -14.45 16 16 C 0.20 4.86 1.97 -68.86 -0.14 4.72 16 17 H 0.03 0.67 7.23 -51.93 -0.38 0.30 16 18 C -0.57 -15.35 7.33 -34.44 -0.25 -15.61 16 19 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 20 C 0.02 0.52 5.25 -17.82 -0.09 0.43 16 21 N -0.91 -26.39 12.90 55.43 0.72 -25.68 16 22 Si 1.07 24.85 29.91 -169.99 -5.08 19.77 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 26 C -0.15 -3.37 5.46 -26.72 -0.15 -3.52 16 27 C -0.13 -2.67 9.39 37.16 0.35 -2.32 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.15 1.19 8.06 -52.48 -0.42 0.76 16 34 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.43 5.77 6.17 -40.82 -0.25 5.52 16 36 H 0.06 0.90 7.43 -51.92 -0.39 0.51 16 37 H 0.10 1.69 8.13 -51.93 -0.42 1.26 16 38 H 0.34 7.05 6.06 -39.29 -0.24 6.81 16 39 H 0.27 7.63 6.02 -40.82 -0.25 7.38 16 40 H 0.07 1.75 6.26 -51.93 -0.32 1.43 16 41 H 0.02 0.38 7.45 -51.93 -0.39 -0.01 16 42 H 0.07 1.63 7.20 -51.93 -0.37 1.26 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.04 0.72 6.34 -51.93 -0.33 0.39 16 LS Contribution 375.91 15.07 5.66 5.66 Total: -1.00 -30.99 375.91 -8.41 -39.40 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.92 Total: 9.20 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.32 Total: -6.07 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.00 Total: -49.03 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.61 Total: -20.59 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.08 Total: 19.77 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -2.15 Total: 1.66 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.99 -8.41 -39.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584299289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.588 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds