Wall clock time and date at job start Sat Apr 11 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47432 * 2 1 4 4 C 1.53000 * 109.47273 * 119.99777 * 2 1 3 5 5 C 1.53003 * 109.47417 * 184.99958 * 4 2 1 6 6 N 1.46501 * 109.47019 * 64.99978 * 4 2 1 7 7 S 1.65600 * 120.00179 * 180.02562 * 6 4 2 8 8 O 1.42096 * 106.40433 * 178.54212 * 7 6 4 9 9 O 1.42101 * 106.40224 * 311.46102 * 7 6 4 10 10 C 1.76199 * 107.21870 * 64.99545 * 7 6 4 11 11 C 1.38653 * 119.88113 * 269.72730 * 10 7 6 12 12 C 1.38616 * 120.50116 * 179.71790 * 11 10 7 13 13 C 1.37640 * 120.24725 * 0.55981 * 12 11 10 14 14 C 1.40697 * 119.74366 * 359.72068 * 13 12 11 15 15 C 1.41396 * 120.24175 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00077 * 155.20324 * 15 14 13 17 17 C 1.39949 * 120.00006 * 335.20182 * 15 14 13 18 18 N 1.30827 * 120.00060 * 342.30121 * 17 15 14 19 19 Si 1.86803 * 120.00033 * 162.29717 * 17 15 14 20 20 H 1.48498 * 109.46676 * 60.00176 * 19 17 15 21 21 H 1.48492 * 109.47279 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46899 * 300.00440 * 19 17 15 23 23 C 1.37608 * 119.87056 * 90.00225 * 10 7 6 24 24 C 1.50696 * 109.47101 * 305.00145 * 4 2 1 25 25 N 1.34778 * 120.00363 * 85.00011 * 24 4 2 26 26 O 1.21285 * 120.00219 * 264.99638 * 24 4 2 27 27 H 1.08997 * 109.47154 * 300.00418 * 1 2 3 28 28 H 1.09004 * 109.46696 * 60.00242 * 1 2 3 29 29 H 1.08999 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47575 * 239.99638 * 2 1 3 31 31 H 1.08998 * 109.47215 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46817 * 300.00109 * 3 2 1 33 33 H 1.09004 * 109.46638 * 59.99669 * 3 2 1 34 34 H 1.09004 * 109.46844 * 179.97438 * 5 4 2 35 35 H 1.08990 * 109.47081 * 300.00241 * 5 4 2 36 36 H 1.09004 * 109.46965 * 60.00169 * 5 4 2 37 37 H 0.96994 * 120.00000 * 0.02562 * 6 4 2 38 38 H 1.08000 * 119.74625 * 0.02562 * 11 10 7 39 39 H 1.07999 * 119.87087 * 180.25469 * 12 11 10 40 40 H 1.07998 * 120.12618 * 179.70044 * 13 12 11 41 41 H 0.96993 * 119.99565 * 179.97438 * 18 17 15 42 42 H 1.07994 * 120.12630 * 359.97438 * 23 10 7 43 43 H 0.96999 * 120.00462 * 180.02562 * 25 24 4 44 44 H 0.97006 * 119.99796 * 359.71587 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3137 6 7 1.6524 -2.1328 1.1906 7 16 2.0740 -3.1590 2.4201 8 8 1.5300 -4.4288 2.0873 9 8 3.4577 -2.9460 2.6638 10 6 1.2251 -2.6172 3.8659 11 6 1.8219 -1.6960 4.7130 12 6 1.1633 -1.2566 5.8508 13 6 -0.0882 -1.7403 6.1578 14 6 -0.7011 -2.6798 5.3086 15 6 -1.9867 -3.1833 5.6136 16 1 -2.6187 -3.5638 4.8249 17 6 -2.4400 -3.1887 6.9377 18 7 -1.5870 -3.0641 7.9217 19 14 -4.2632 -3.3737 7.2999 20 1 -4.7488 -4.6645 6.7492 21 1 -4.4812 -3.3482 8.7685 22 1 -5.0091 -2.2547 6.6697 23 6 -0.0255 -3.1144 4.1531 24 6 1.4391 -0.0859 2.4765 25 7 0.2221 -0.4721 2.9081 26 8 2.0507 0.7730 3.0760 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9281 -1.1267 2.2040 35 1 3.9994 -1.0727 0.4261 36 1 3.8532 0.4370 1.3574 37 1 1.1489 -2.4663 0.4317 38 1 2.8054 -1.3142 4.4819 39 1 1.6360 -0.5357 6.5013 40 1 -0.5975 -1.4003 7.0474 41 1 -1.9013 -3.0675 8.8393 42 1 -0.4868 -3.8349 3.4941 43 1 -0.1648 -0.0629 3.6979 44 1 -0.2688 -1.1561 2.4264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586772864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:52 Heat of formation + Delta-G solvation = -90.051912 kcal Electronic energy + Delta-G solvation = -30024.588812 eV Core-core repulsion = 26068.808292 eV Total energy + Delta-G solvation = -3955.780521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.42761 -37.79926 -36.80554 -36.58330 -35.40499 -34.00674 -33.32309 -32.84567 -30.11188 -29.82745 -29.51470 -26.93021 -25.52552 -24.33399 -22.23057 -21.75063 -21.02669 -19.39335 -18.99117 -17.98781 -17.55235 -17.24663 -16.48545 -15.95902 -15.51113 -15.24387 -14.89969 -14.74674 -14.50657 -13.93695 -13.69939 -13.49097 -13.40839 -13.32996 -13.08223 -12.59374 -12.42692 -12.26441 -12.02788 -11.89441 -11.73239 -11.62654 -11.44738 -11.42693 -11.25835 -11.21205 -11.11203 -10.98420 -10.90979 -10.64288 -10.52160 -10.20208 -9.79087 -9.58987 -9.42235 -9.09883 -9.00461 -7.96772 -7.69800 -6.95376 -4.57424 0.87504 2.13231 2.59943 2.82613 2.96984 2.98219 3.04475 3.44271 3.76457 3.79233 4.13795 4.39308 4.50671 4.71815 4.78021 4.94229 5.16322 5.20558 5.37039 5.38817 5.49771 5.55563 5.72475 5.77465 5.86671 5.98849 6.03351 6.06657 6.13301 6.18933 6.26711 6.62575 6.64474 6.73086 6.78633 6.98364 7.04386 7.17647 7.23128 7.34487 7.72608 7.74056 7.75627 7.90532 8.35786 8.61690 8.63532 8.67527 10.00008 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.004385 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.460403 B = 6383.901981 C = 6754.973872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.085 4.085 3 C -0.152 4.152 4 C 0.170 3.830 5 C -0.176 4.176 6 N -1.116 6.116 7 S 2.677 3.323 8 O -0.969 6.969 9 O -0.965 6.965 10 C -0.628 4.628 11 C -0.128 4.128 12 C -0.115 4.115 13 C -0.116 4.116 14 C 0.095 3.905 15 C -0.464 4.464 16 H 0.081 0.919 17 C 0.076 3.924 18 N -0.793 5.793 19 Si 0.911 3.089 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.132 4.132 24 C 0.511 3.489 25 N -0.829 5.829 26 O -0.533 6.533 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.416 0.584 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.284 0.716 42 H 0.110 0.890 43 H 0.406 0.594 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.268 6.152 -12.702 14.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.105 4.105 3 C -0.210 4.210 4 C 0.078 3.922 5 C -0.235 4.235 6 N -0.875 5.875 7 S 2.775 3.225 8 O -0.959 6.959 9 O -0.955 6.955 10 C -0.720 4.720 11 C -0.149 4.149 12 C -0.135 4.135 13 C -0.136 4.136 14 C 0.091 3.909 15 C -0.493 4.493 16 H 0.099 0.901 17 C -0.142 4.142 18 N -0.417 5.417 19 Si 0.735 3.265 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.154 4.154 24 C 0.293 3.707 25 N -0.392 5.392 26 O -0.408 6.408 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.251 0.749 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.140 0.860 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.238 0.762 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.507 6.009 -12.119 13.758 hybrid contribution -1.981 -0.170 0.593 2.075 sum 0.526 5.839 -11.526 12.932 Atomic orbital electron populations 1.22102 0.94499 1.02523 1.02994 1.21270 0.96463 0.97014 0.95794 1.21956 1.01960 0.94619 1.02455 1.20465 0.96650 0.80314 0.94753 1.22609 0.91157 1.04263 1.05446 1.55885 1.73354 1.19772 1.38477 1.02038 0.74258 0.72555 0.73689 1.93552 1.80267 1.38112 1.83976 1.93486 1.31421 1.85123 1.85468 1.29619 1.09210 1.13557 1.19657 1.20104 0.98901 0.99351 0.96557 1.20767 0.95973 1.00101 0.96641 1.21641 0.94868 0.96414 1.00682 1.17584 0.92631 0.90059 0.90586 1.19545 0.99884 1.36615 0.93287 0.90104 1.25913 0.99973 0.92368 0.95992 1.69771 1.36149 1.34983 1.00837 0.86319 0.82235 0.80038 0.77919 1.18900 1.20312 1.18785 1.20644 0.92606 1.00772 1.01350 1.20503 0.81894 0.83167 0.85171 1.44125 1.19328 1.43340 1.32432 1.90714 1.60839 1.32374 1.56904 0.91438 0.91990 0.92014 0.89384 0.91559 0.92306 0.91672 0.88005 0.91483 0.90192 0.74918 0.87685 0.88613 0.85959 0.90504 0.87246 0.76164 0.77134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.10 37.16 0.30 -1.15 16 2 C -0.09 -0.83 2.32 -90.62 -0.21 -1.04 16 3 C -0.15 -1.48 8.50 37.16 0.32 -1.17 16 4 C 0.17 2.20 0.56 -132.97 -0.07 2.12 16 5 C -0.18 -2.43 7.16 37.16 0.27 -2.16 16 6 N -1.12 -14.29 4.53 -0.40 0.00 -14.30 16 7 S 2.68 47.24 5.64 -107.50 -0.61 46.63 16 8 O -0.97 -19.29 17.27 -57.17 -0.99 -20.28 16 9 O -0.97 -18.93 13.87 -57.17 -0.79 -19.72 16 10 C -0.63 -12.51 3.26 -39.66 -0.13 -12.64 16 11 C -0.13 -2.66 6.22 -39.29 -0.24 -2.91 16 12 C -0.12 -2.48 9.62 -39.66 -0.38 -2.86 16 13 C -0.12 -2.68 8.70 -38.87 -0.34 -3.02 16 14 C 0.09 2.22 5.57 -106.83 -0.60 1.62 16 15 C -0.46 -11.05 9.05 -37.74 -0.34 -11.39 16 16 H 0.08 1.83 7.91 -52.49 -0.41 1.42 16 17 C 0.08 1.76 5.14 -17.34 -0.09 1.67 16 18 N -0.79 -19.14 10.97 55.55 0.61 -18.53 16 19 Si 0.91 17.39 29.59 -169.99 -5.03 12.36 16 20 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 21 H -0.28 -5.26 7.11 56.52 0.40 -4.85 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 23 C -0.13 -2.82 8.21 -38.87 -0.32 -3.14 16 24 C 0.51 7.83 2.50 -10.99 -0.03 7.80 16 25 N -0.83 -12.12 4.15 31.22 0.13 -11.99 16 26 O -0.53 -9.72 15.79 5.55 0.09 -9.63 16 27 H 0.07 0.68 6.26 -51.93 -0.32 0.35 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.49 7.18 -51.93 -0.37 0.12 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.63 6.35 -51.93 -0.33 0.30 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.76 6.97 -51.93 -0.36 0.40 16 34 H 0.10 1.70 5.36 -51.93 -0.28 1.42 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.04 6.07 -51.93 -0.32 0.72 16 37 H 0.42 4.06 7.79 -34.47 -0.27 3.79 16 38 H 0.11 2.20 7.30 -52.49 -0.38 1.82 16 39 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 40 H 0.12 2.94 6.18 -52.49 -0.32 2.62 16 41 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 42 H 0.11 2.26 7.60 -52.49 -0.40 1.86 16 43 H 0.41 6.41 8.49 -40.82 -0.35 6.06 16 44 H 0.40 5.26 6.59 -40.82 -0.27 5.00 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -29.60 347.02 -8.87 -38.47 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -5.64 Total: 20.03 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: -1.87 Total: -28.27 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.74 Total: -44.82 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -1.69 Total: -49.63 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Atomic # 16 Polarization: 47.24 SS G_CDS: -0.61 Total: 46.63 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.60 -8.87 -38.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586772864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.583 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds