Wall clock time and date at job start Sat Apr 11 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47432 * 2 1 4 4 C 1.53000 * 109.47273 * 119.99777 * 2 1 3 5 5 C 1.53003 * 109.47417 * 184.99958 * 4 2 1 6 6 N 1.46501 * 109.47019 * 64.99978 * 4 2 1 7 7 S 1.65600 * 120.00179 * 180.02562 * 6 4 2 8 8 O 1.42096 * 106.40433 * 178.54212 * 7 6 4 9 9 O 1.42101 * 106.40224 * 311.46102 * 7 6 4 10 10 C 1.76199 * 107.21870 * 64.99545 * 7 6 4 11 11 C 1.38653 * 119.88113 * 269.72730 * 10 7 6 12 12 C 1.38616 * 120.50116 * 179.71790 * 11 10 7 13 13 C 1.37640 * 120.24725 * 0.55981 * 12 11 10 14 14 C 1.40697 * 119.74366 * 359.72068 * 13 12 11 15 15 C 1.41396 * 120.24175 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00077 * 155.20324 * 15 14 13 17 17 C 1.39949 * 120.00006 * 335.20182 * 15 14 13 18 18 N 1.30827 * 120.00060 * 342.30121 * 17 15 14 19 19 Si 1.86803 * 120.00033 * 162.29717 * 17 15 14 20 20 H 1.48498 * 109.46676 * 60.00176 * 19 17 15 21 21 H 1.48492 * 109.47279 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46899 * 300.00440 * 19 17 15 23 23 C 1.37608 * 119.87056 * 90.00225 * 10 7 6 24 24 C 1.50696 * 109.47101 * 305.00145 * 4 2 1 25 25 N 1.34778 * 120.00363 * 85.00011 * 24 4 2 26 26 O 1.21285 * 120.00219 * 264.99638 * 24 4 2 27 27 H 1.08997 * 109.47154 * 300.00418 * 1 2 3 28 28 H 1.09004 * 109.46696 * 60.00242 * 1 2 3 29 29 H 1.08999 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47575 * 239.99638 * 2 1 3 31 31 H 1.08998 * 109.47215 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46817 * 300.00109 * 3 2 1 33 33 H 1.09004 * 109.46638 * 59.99669 * 3 2 1 34 34 H 1.09004 * 109.46844 * 179.97438 * 5 4 2 35 35 H 1.08990 * 109.47081 * 300.00241 * 5 4 2 36 36 H 1.09004 * 109.46965 * 60.00169 * 5 4 2 37 37 H 0.96994 * 120.00000 * 0.02562 * 6 4 2 38 38 H 1.08000 * 119.74625 * 0.02562 * 11 10 7 39 39 H 1.07999 * 119.87087 * 180.25469 * 12 11 10 40 40 H 1.07998 * 120.12618 * 179.70044 * 13 12 11 41 41 H 0.96993 * 119.99565 * 179.97438 * 18 17 15 42 42 H 1.07994 * 120.12630 * 359.97438 * 23 10 7 43 43 H 0.96999 * 120.00462 * 180.02562 * 25 24 4 44 44 H 0.97006 * 119.99796 * 359.71587 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3137 6 7 1.6524 -2.1328 1.1906 7 16 2.0740 -3.1590 2.4201 8 8 1.5300 -4.4288 2.0873 9 8 3.4577 -2.9460 2.6638 10 6 1.2251 -2.6172 3.8659 11 6 1.8219 -1.6960 4.7130 12 6 1.1633 -1.2566 5.8508 13 6 -0.0882 -1.7403 6.1578 14 6 -0.7011 -2.6798 5.3086 15 6 -1.9867 -3.1833 5.6136 16 1 -2.6187 -3.5638 4.8249 17 6 -2.4400 -3.1887 6.9377 18 7 -1.5870 -3.0641 7.9217 19 14 -4.2632 -3.3737 7.2999 20 1 -4.7488 -4.6645 6.7492 21 1 -4.4812 -3.3482 8.7685 22 1 -5.0091 -2.2547 6.6697 23 6 -0.0255 -3.1144 4.1531 24 6 1.4391 -0.0859 2.4765 25 7 0.2221 -0.4721 2.9081 26 8 2.0507 0.7730 3.0760 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9281 -1.1267 2.2040 35 1 3.9994 -1.0727 0.4261 36 1 3.8532 0.4370 1.3574 37 1 1.1489 -2.4663 0.4317 38 1 2.8054 -1.3142 4.4819 39 1 1.6360 -0.5357 6.5013 40 1 -0.5975 -1.4003 7.0474 41 1 -1.9013 -3.0675 8.8393 42 1 -0.4868 -3.8349 3.4941 43 1 -0.1648 -0.0629 3.6979 44 1 -0.2688 -1.1561 2.4264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586772864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:51 Heat of formation + Delta-G solvation = -111.357532 kcal Electronic energy + Delta-G solvation = -30025.512693 eV Core-core repulsion = 26068.808292 eV Total energy + Delta-G solvation = -3956.704402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.59548 -39.46928 -38.31639 -37.77102 -36.94406 -35.69628 -34.48117 -33.97201 -31.86973 -31.52457 -30.57348 -27.71947 -27.29437 -25.41344 -23.69512 -23.00691 -22.71445 -20.62269 -20.35036 -19.56141 -18.74841 -18.56859 -17.81245 -17.57424 -16.89965 -16.62363 -16.44603 -16.32888 -15.46236 -15.32220 -15.05148 -15.03275 -14.60957 -14.50466 -14.27855 -14.19103 -13.68196 -13.49820 -13.22986 -13.19327 -13.07452 -13.03707 -12.90207 -12.86458 -12.74320 -12.55798 -12.40407 -12.20681 -12.13596 -11.80160 -11.65038 -11.51980 -11.34027 -11.14367 -11.10879 -10.40405 -10.32612 -9.63508 -9.44523 -8.68810 -6.39019 -0.58054 0.43844 0.89655 1.40357 1.48913 1.51756 1.60091 2.08385 2.19716 2.54541 2.61259 2.79058 3.40837 3.54888 3.60451 3.78021 4.02587 4.06084 4.25271 4.34613 4.46116 4.50632 4.64918 4.84027 4.89309 4.90989 4.95611 4.98270 5.05101 5.06106 5.11752 5.17451 5.25120 5.39218 5.44706 5.46929 5.56827 5.60506 5.95801 5.97363 5.98536 6.04990 6.13185 6.56124 6.58080 6.85911 6.90429 7.39689 8.28455 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.004385 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.460403 B = 6383.901981 C = 6754.973872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.080 4.080 3 C -0.152 4.152 4 C 0.172 3.828 5 C -0.180 4.180 6 N -1.092 6.092 7 S 2.704 3.296 8 O -0.987 6.987 9 O -0.981 6.981 10 C -0.628 4.628 11 C -0.127 4.127 12 C -0.117 4.117 13 C -0.131 4.131 14 C 0.077 3.923 15 C -0.493 4.493 16 H 0.086 0.914 17 C 0.037 3.963 18 N -0.827 5.827 19 Si 0.980 3.020 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.257 1.257 23 C -0.132 4.132 24 C 0.508 3.492 25 N -0.826 5.826 26 O -0.566 6.566 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.435 0.565 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.289 0.711 42 H 0.117 0.883 43 H 0.399 0.601 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 6.036 -15.219 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.100 4.100 3 C -0.210 4.210 4 C 0.080 3.920 5 C -0.239 4.239 6 N -0.857 5.857 7 S 2.798 3.202 8 O -0.977 6.977 9 O -0.970 6.970 10 C -0.718 4.718 11 C -0.148 4.148 12 C -0.137 4.137 13 C -0.151 4.151 14 C 0.074 3.926 15 C -0.522 4.522 16 H 0.104 0.896 17 C -0.178 4.178 18 N -0.453 5.453 19 Si 0.801 3.199 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.181 1.181 23 C -0.153 4.153 24 C 0.291 3.709 25 N -0.388 5.388 26 O -0.444 6.444 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.274 0.726 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.135 0.865 43 H 0.230 0.770 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.859 5.874 -14.638 15.881 hybrid contribution -1.682 -0.081 1.297 2.126 sum 0.177 5.792 -13.340 14.545 Atomic orbital electron populations 1.22153 0.93773 1.03336 1.03223 1.21359 0.97061 0.96770 0.94780 1.21965 1.02131 0.94532 1.02351 1.20577 0.96281 0.79864 0.95240 1.22635 0.91579 1.04530 1.05150 1.55392 1.73342 1.19354 1.37581 1.01255 0.73435 0.72233 0.73313 1.93527 1.80489 1.39633 1.84059 1.93488 1.32265 1.85436 1.85855 1.30004 1.08613 1.12263 1.20883 1.20112 0.98750 0.99507 0.96418 1.20869 0.95617 1.00126 0.97065 1.21508 0.95527 0.97429 1.00656 1.17815 0.93074 0.90305 0.91386 1.19851 1.00571 1.37738 0.94087 0.89580 1.26717 1.04035 0.91573 0.95498 1.69838 1.38084 1.35989 1.01344 0.85270 0.76840 0.80050 0.77723 1.18556 1.19977 1.18117 1.20717 0.93001 1.00732 1.00818 1.20974 0.81626 0.82768 0.85569 1.44143 1.19328 1.43223 1.32061 1.90696 1.61666 1.33991 1.58074 0.93108 0.89976 0.90933 0.86347 0.91356 0.90003 0.94160 0.90984 0.89019 0.89693 0.72557 0.87818 0.87886 0.87552 0.90077 0.86485 0.77015 0.76334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 8.10 71.98 0.58 -1.87 16 2 C -0.08 -1.29 2.32 -10.79 -0.03 -1.31 16 3 C -0.15 -2.58 8.50 71.98 0.61 -1.96 16 4 C 0.17 4.09 0.56 2.86 0.00 4.09 16 5 C -0.18 -4.64 7.16 71.98 0.52 -4.12 16 6 N -1.09 -25.26 4.53 -155.18 -0.70 -25.96 16 7 S 2.70 91.65 5.64 -56.49 -0.32 91.33 16 8 O -0.99 -37.59 17.27 -128.00 -2.21 -39.80 16 9 O -0.98 -37.44 13.87 -128.00 -1.78 -39.21 16 10 C -0.63 -24.86 3.26 22.22 0.07 -24.79 16 11 C -0.13 -5.34 6.22 22.46 0.14 -5.20 16 12 C -0.12 -5.19 9.62 22.22 0.21 -4.98 16 13 C -0.13 -6.25 8.70 22.73 0.20 -6.06 16 14 C 0.08 3.68 5.57 -21.29 -0.12 3.56 16 15 C -0.49 -23.78 9.05 23.46 0.21 -23.57 16 16 H 0.09 3.91 7.91 -2.91 -0.02 3.89 16 17 C 0.04 1.73 5.14 85.26 0.44 2.17 16 18 N -0.83 -40.84 10.97 21.83 0.24 -40.60 16 19 Si 0.98 35.58 29.59 68.60 2.03 37.61 16 20 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 21 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 22 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 23 C -0.13 -5.62 8.21 22.73 0.19 -5.43 16 24 C 0.51 15.27 2.50 87.66 0.22 15.49 16 25 N -0.83 -23.96 4.15 -173.53 -0.72 -24.68 16 26 O -0.57 -20.86 15.79 -3.04 -0.05 -20.91 16 27 H 0.05 0.93 6.26 -2.39 -0.01 0.91 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.90 7.18 -2.39 -0.02 0.88 16 30 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.12 6.35 -2.39 -0.02 1.11 16 32 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.04 0.89 6.97 -2.39 -0.02 0.87 16 34 H 0.07 2.34 5.36 -2.39 -0.01 2.33 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 2.09 6.07 -2.39 -0.01 2.08 16 37 H 0.44 6.91 7.79 -96.75 -0.75 6.16 16 38 H 0.10 4.40 7.30 -2.91 -0.02 4.38 16 39 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 40 H 0.11 5.37 6.18 -2.91 -0.02 5.35 16 41 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 42 H 0.12 4.76 7.60 -2.91 -0.02 4.74 16 43 H 0.40 12.89 8.49 -92.71 -0.79 12.10 16 44 H 0.41 10.36 6.59 -92.70 -0.61 9.75 16 Total: -1.00 -64.63 347.02 -1.34 -65.97 By element: Atomic # 1 Polarization: 51.32 SS G_CDS: -1.08 Total: 50.25 kcal Atomic # 6 Polarization: -57.23 SS G_CDS: 3.25 Total: -53.98 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -1.18 Total: -91.25 kcal Atomic # 8 Polarization: -95.89 SS G_CDS: -4.03 Total: -99.92 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.61 kcal Atomic # 16 Polarization: 91.65 SS G_CDS: -0.32 Total: 91.33 kcal Total: -64.63 -1.34 -65.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586772864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.389 kcal (2) G-P(sol) polarization free energy of solvation -64.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds