Wall clock time and date at job start Sat Apr 11 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 H 1.08997 * 109.47305 * 181.84575 * 3 2 1 5 5 C 1.50708 * 109.47142 * 61.85113 * 3 2 1 6 6 H 1.07998 * 120.00178 * 244.99063 * 5 3 2 7 7 C 1.37880 * 119.99942 * 64.98326 * 5 3 2 8 8 N 1.31513 * 119.99957 * 9.79837 * 7 5 3 9 9 Si 1.86800 * 119.99909 * 189.79590 * 7 5 3 10 10 H 1.48506 * 109.47054 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47244 * 299.99987 * 9 7 5 12 12 H 1.48500 * 109.46816 * 60.00610 * 9 7 5 13 13 N 1.46896 * 109.47300 * 301.85313 * 3 2 1 14 14 C 1.46900 * 110.99839 * 274.23412 * 13 3 2 15 15 C 1.50698 * 109.47312 * 183.56497 * 14 13 3 16 16 O 1.21280 * 120.00108 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00237 * 180.02562 * 15 14 13 18 18 C 1.46498 * 120.00262 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47073 * 179.97438 * 18 17 15 20 20 O 1.42899 * 109.47416 * 64.99948 * 19 18 17 21 21 C 1.35896 * 116.99946 * 179.97438 * 20 19 18 22 22 C 1.38763 * 120.04965 * 359.72243 * 21 20 19 23 23 C 1.38132 * 119.96705 * 179.74447 * 22 21 20 24 24 C 1.38264 * 120.07119 * 0.55237 * 23 22 21 25 25 C 1.38367 * 120.09566 * 359.70219 * 24 23 22 26 26 Cl 1.73598 * 119.98377 * 180.02562 * 25 24 23 27 27 C 1.38276 * 120.02861 * 0.02562 * 25 24 23 28 28 H 1.09005 * 109.46996 * 64.48620 * 1 2 3 29 29 H 1.09002 * 109.47231 * 184.48592 * 1 2 3 30 30 H 1.08999 * 109.46877 * 304.48761 * 1 2 3 31 31 H 1.08998 * 109.46901 * 240.00272 * 2 1 3 32 32 H 1.09000 * 109.47196 * 119.99665 * 2 1 3 33 33 H 0.97004 * 120.00255 * 357.09370 * 8 7 5 34 34 H 1.00899 * 111.00000 * 150.28100 * 13 3 2 35 35 H 1.09004 * 109.47078 * 303.56314 * 14 13 3 36 36 H 1.09000 * 109.47620 * 63.55708 * 14 13 3 37 37 H 0.97002 * 119.99674 * 359.97438 * 17 15 14 38 38 H 1.08999 * 109.46707 * 299.99645 * 18 17 15 39 39 H 1.08999 * 109.47364 * 59.99630 * 18 17 15 40 40 H 1.08999 * 109.46888 * 185.00542 * 19 18 17 41 41 H 1.09006 * 109.46929 * 304.99510 * 19 18 17 42 42 H 1.08001 * 120.01686 * 0.02643 * 22 21 20 43 43 H 1.08000 * 119.96293 * 180.25392 * 23 22 21 44 44 H 1.08000 * 119.95114 * 179.71870 * 24 23 22 45 45 H 1.08001 * 120.03323 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 -0.0331 5 6 1.5755 2.1396 1.2528 6 1 0.8873 2.9692 1.1857 7 6 2.0289 1.7180 2.4848 8 7 3.0071 0.8423 2.5610 9 14 1.2539 2.3909 4.0456 10 1 1.9152 1.7833 5.2283 11 1 1.4232 3.8656 4.0864 12 1 -0.1932 2.0579 4.0629 13 7 1.5141 2.1478 -1.1764 14 6 2.3724 1.9293 -2.3484 15 6 1.8517 2.7361 -3.5098 16 8 0.8627 3.4250 -3.3747 17 7 2.4844 2.6914 -4.6990 18 6 1.9779 3.4753 -5.8282 19 6 2.8719 3.2477 -7.0488 20 8 2.7753 1.8833 -7.4623 21 6 3.5126 1.5121 -8.5418 22 6 4.3082 2.4437 -9.1935 23 6 5.0610 2.0634 -10.2874 24 6 5.0138 0.7580 -10.7408 25 6 4.2173 -0.1719 -10.0964 26 17 4.1608 -1.8102 -10.6678 27 6 3.4664 0.2031 -8.9975 28 1 -0.3633 0.4427 -0.9275 29 1 -0.3634 -1.0245 0.0804 30 1 -0.3633 0.5819 0.8471 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3812 0.4612 1.7512 34 1 1.4035 3.1329 -0.9878 35 1 3.3906 2.2417 -2.1164 36 1 2.3678 0.8711 -2.6099 37 1 3.2752 2.1401 -4.8071 38 1 0.9597 3.1627 -6.0598 39 1 1.9825 4.5335 -5.5671 40 1 2.5487 3.8976 -7.8620 41 1 3.9056 3.4766 -6.7898 42 1 4.3424 3.4646 -8.8427 43 1 5.6834 2.7875 -10.7920 44 1 5.5997 0.4639 -11.5991 45 1 2.8450 -0.5229 -8.4942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594008853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:01 Heat of formation + Delta-G solvation = -62.694229 kcal Electronic energy + Delta-G solvation = -25986.084917 eV Core-core repulsion = 22029.447008 eV Total energy + Delta-G solvation = -3956.637909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74004 -39.48999 -38.23640 -36.76954 -36.33227 -34.84511 -32.71481 -31.63089 -30.92218 -30.59202 -29.58327 -27.03486 -24.77048 -23.73983 -23.35560 -23.13490 -21.91275 -20.48033 -19.28020 -18.98679 -17.59556 -16.87715 -16.71630 -16.54267 -16.11650 -15.60418 -15.54191 -15.34879 -14.44977 -14.19163 -14.13105 -13.84559 -13.77679 -13.64000 -13.52147 -13.06335 -12.86265 -12.47314 -12.37126 -12.15181 -12.00900 -11.79569 -11.64749 -11.55079 -11.35562 -11.30338 -11.11680 -10.77194 -10.15475 -10.08389 -10.02302 -9.72923 -9.52407 -9.37935 -9.12744 -8.79317 -8.58732 -8.24304 -7.40187 -6.36928 -4.06502 0.59121 0.81492 1.56352 2.65460 2.87907 3.09183 3.14560 3.44725 3.48098 3.65516 4.14476 4.33302 4.43972 4.51551 4.53958 4.57870 4.66241 4.76501 4.88065 5.04808 5.20101 5.25734 5.34694 5.37471 5.52075 5.61727 5.73980 5.78860 5.79153 5.79250 5.99476 6.30365 6.35369 6.43767 6.62390 6.81901 6.94042 7.04239 7.24776 7.43295 7.51349 7.57708 7.86536 8.09238 8.38138 8.52063 8.58584 8.86600 9.63604 11.00659 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018192 B = 0.001775 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.809311 B =15772.205571 C =16601.969047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 C 0.204 3.796 4 H -0.006 1.006 5 C -0.595 4.595 6 H 0.055 0.945 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 1.067 2.933 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.286 1.286 13 N -0.663 5.663 14 C 0.042 3.958 15 C 0.515 3.485 16 O -0.525 6.525 17 N -0.738 5.738 18 C 0.124 3.876 19 C 0.047 3.953 20 O -0.306 6.306 21 C 0.146 3.854 22 C -0.206 4.206 23 C -0.067 4.067 24 C -0.151 4.151 25 C 0.004 3.996 26 Cl -0.061 7.061 27 C -0.145 4.145 28 H 0.048 0.952 29 H 0.018 0.982 30 H 0.060 0.940 31 H 0.018 0.982 32 H 0.059 0.941 33 H 0.270 0.730 34 H 0.344 0.656 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.401 0.599 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.037 1.824 -29.046 29.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.145 4.145 3 C 0.096 3.904 4 H 0.011 0.989 5 C -0.633 4.633 6 H 0.073 0.927 7 C -0.181 4.181 8 N -0.545 5.545 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.296 5.296 14 C -0.091 4.091 15 C 0.302 3.698 16 O -0.399 6.399 17 N -0.394 5.394 18 C 0.000 4.000 19 C -0.028 4.028 20 O -0.219 6.219 21 C 0.100 3.900 22 C -0.225 4.225 23 C -0.085 4.085 24 C -0.170 4.170 25 C -0.022 4.022 26 Cl -0.032 7.032 27 C -0.165 4.165 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.164 0.836 35 H 0.066 0.934 36 H 0.110 0.890 37 H 0.236 0.764 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.152 0.848 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.806 1.530 -27.357 27.818 hybrid contribution 1.233 0.301 -1.779 2.185 sum 6.040 1.830 -29.136 29.812 Atomic orbital electron populations 1.21437 0.96380 0.97861 1.02179 1.21509 0.96444 0.98150 0.98377 1.19301 0.92169 0.91398 0.87494 0.98898 1.21944 1.31183 1.18617 0.91602 0.92657 1.25724 0.94750 0.96019 1.01631 1.70814 1.22017 1.29019 1.32674 0.83571 0.75835 0.75636 0.75449 1.20916 1.21555 1.21289 1.60407 1.48253 1.17202 1.03704 1.21849 0.95931 0.99886 0.91397 1.21024 0.83349 0.81884 0.83564 1.90687 1.25103 1.40793 1.83313 1.45986 1.32638 1.49876 1.10851 1.21316 0.98110 0.97018 0.83526 1.23207 1.01101 0.81273 0.97255 1.86163 1.63244 1.29311 1.43182 1.18764 0.91096 0.92903 0.87226 1.21401 1.01435 1.00093 0.99592 1.20912 0.97131 0.95417 0.95028 1.20986 1.01235 0.92862 1.01904 1.20595 0.99021 0.86573 0.96053 1.98394 1.97563 1.19027 1.88237 1.20261 1.03321 0.94966 0.97904 0.93261 0.96339 0.92083 0.96337 0.92195 0.91908 0.83644 0.93389 0.89001 0.76449 0.90290 0.89245 0.90078 0.90880 0.84738 0.84686 0.84754 0.83917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.52 37.16 0.35 -2.37 16 2 C -0.11 -2.50 5.49 -26.73 -0.15 -2.64 16 3 C 0.20 5.02 1.93 -68.86 -0.13 4.89 16 4 H -0.01 -0.17 7.09 -51.93 -0.37 -0.54 16 5 C -0.59 -16.26 7.24 -34.44 -0.25 -16.50 16 6 H 0.06 1.54 7.67 -52.49 -0.40 1.14 16 7 C 0.02 0.66 5.18 -17.82 -0.09 0.56 16 8 N -0.91 -26.64 13.04 55.43 0.72 -25.92 16 9 Si 1.07 25.04 29.91 -169.99 -5.09 19.95 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.66 -14.40 5.24 -109.22 -0.57 -14.97 16 14 C 0.04 0.73 6.01 -4.98 -0.03 0.70 16 15 C 0.51 8.24 7.86 -10.99 -0.09 8.16 16 16 O -0.52 -10.39 16.12 5.56 0.09 -10.30 16 17 N -0.74 -8.39 5.50 -60.30 -0.33 -8.73 16 18 C 0.12 1.14 6.06 -4.04 -0.02 1.12 16 19 C 0.05 0.30 4.87 37.16 0.18 0.48 16 20 O -0.31 -2.69 10.08 -19.41 -0.20 -2.88 16 21 C 0.15 1.21 6.69 -39.22 -0.26 0.95 16 22 C -0.21 -1.32 9.04 -39.43 -0.36 -1.68 16 23 C -0.07 -0.38 10.04 -39.61 -0.40 -0.78 16 24 C -0.15 -0.99 9.83 -39.52 -0.39 -1.38 16 25 C 0.00 0.03 6.32 -39.52 -0.25 -0.21 16 26 Cl -0.06 -0.48 28.95 -51.86 -1.50 -1.98 16 27 C -0.15 -1.26 9.77 -39.40 -0.38 -1.64 16 28 H 0.05 1.09 7.70 -51.93 -0.40 0.69 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 1.48 7.13 -51.93 -0.37 1.11 16 31 H 0.02 0.39 7.62 -51.93 -0.40 -0.01 16 32 H 0.06 1.53 6.38 -51.93 -0.33 1.20 16 33 H 0.27 7.85 6.04 -40.82 -0.25 7.60 16 34 H 0.34 7.86 7.80 -39.29 -0.31 7.55 16 35 H 0.05 0.79 7.97 -51.93 -0.41 0.37 16 36 H 0.09 1.51 7.61 -51.93 -0.40 1.11 16 37 H 0.40 3.73 8.47 -40.82 -0.35 3.39 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.36 7.65 -51.93 -0.40 -0.04 16 41 H 0.07 0.37 7.68 -51.93 -0.40 -0.03 16 42 H 0.13 0.59 6.30 -52.49 -0.33 0.26 16 43 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 44 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 45 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -32.57 387.69 -9.73 -42.30 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.43 Total: 7.04 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.27 Total: -10.35 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.18 Total: -49.62 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.11 Total: -13.18 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.09 Total: 19.95 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.57 -9.73 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.393 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds