Wall clock time and date at job start Sat Apr 11 2020 05:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 H 1.08997 * 109.47305 * 181.84575 * 3 2 1 5 5 C 1.50708 * 109.47142 * 61.85113 * 3 2 1 6 6 H 1.07998 * 120.00178 * 244.99063 * 5 3 2 7 7 C 1.37880 * 119.99942 * 64.98326 * 5 3 2 8 8 N 1.31513 * 119.99957 * 9.79837 * 7 5 3 9 9 Si 1.86800 * 119.99909 * 189.79590 * 7 5 3 10 10 H 1.48506 * 109.47054 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47244 * 299.99987 * 9 7 5 12 12 H 1.48500 * 109.46816 * 60.00610 * 9 7 5 13 13 N 1.46896 * 109.47300 * 301.85313 * 3 2 1 14 14 C 1.46900 * 110.99839 * 274.23412 * 13 3 2 15 15 C 1.50698 * 109.47312 * 183.56497 * 14 13 3 16 16 O 1.21280 * 120.00108 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00237 * 180.02562 * 15 14 13 18 18 C 1.46498 * 120.00262 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47073 * 179.97438 * 18 17 15 20 20 O 1.42899 * 109.47416 * 64.99948 * 19 18 17 21 21 C 1.35896 * 116.99946 * 179.97438 * 20 19 18 22 22 C 1.38763 * 120.04965 * 359.72243 * 21 20 19 23 23 C 1.38132 * 119.96705 * 179.74447 * 22 21 20 24 24 C 1.38264 * 120.07119 * 0.55237 * 23 22 21 25 25 C 1.38367 * 120.09566 * 359.70219 * 24 23 22 26 26 Cl 1.73598 * 119.98377 * 180.02562 * 25 24 23 27 27 C 1.38276 * 120.02861 * 0.02562 * 25 24 23 28 28 H 1.09005 * 109.46996 * 64.48620 * 1 2 3 29 29 H 1.09002 * 109.47231 * 184.48592 * 1 2 3 30 30 H 1.08999 * 109.46877 * 304.48761 * 1 2 3 31 31 H 1.08998 * 109.46901 * 240.00272 * 2 1 3 32 32 H 1.09000 * 109.47196 * 119.99665 * 2 1 3 33 33 H 0.97004 * 120.00255 * 357.09370 * 8 7 5 34 34 H 1.00899 * 111.00000 * 150.28100 * 13 3 2 35 35 H 1.09004 * 109.47078 * 303.56314 * 14 13 3 36 36 H 1.09000 * 109.47620 * 63.55708 * 14 13 3 37 37 H 0.97002 * 119.99674 * 359.97438 * 17 15 14 38 38 H 1.08999 * 109.46707 * 299.99645 * 18 17 15 39 39 H 1.08999 * 109.47364 * 59.99630 * 18 17 15 40 40 H 1.08999 * 109.46888 * 185.00542 * 19 18 17 41 41 H 1.09006 * 109.46929 * 304.99510 * 19 18 17 42 42 H 1.08001 * 120.01686 * 0.02643 * 22 21 20 43 43 H 1.08000 * 119.96293 * 180.25392 * 23 22 21 44 44 H 1.08000 * 119.95114 * 179.71870 * 24 23 22 45 45 H 1.08001 * 120.03323 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 -0.0331 5 6 1.5755 2.1396 1.2528 6 1 0.8873 2.9692 1.1857 7 6 2.0289 1.7180 2.4848 8 7 3.0071 0.8423 2.5610 9 14 1.2539 2.3909 4.0456 10 1 1.9152 1.7833 5.2283 11 1 1.4232 3.8656 4.0864 12 1 -0.1932 2.0579 4.0629 13 7 1.5141 2.1478 -1.1764 14 6 2.3724 1.9293 -2.3484 15 6 1.8517 2.7361 -3.5098 16 8 0.8627 3.4250 -3.3747 17 7 2.4844 2.6914 -4.6990 18 6 1.9779 3.4753 -5.8282 19 6 2.8719 3.2477 -7.0488 20 8 2.7753 1.8833 -7.4623 21 6 3.5126 1.5121 -8.5418 22 6 4.3082 2.4437 -9.1935 23 6 5.0610 2.0634 -10.2874 24 6 5.0138 0.7580 -10.7408 25 6 4.2173 -0.1719 -10.0964 26 17 4.1608 -1.8102 -10.6678 27 6 3.4664 0.2031 -8.9975 28 1 -0.3633 0.4427 -0.9275 29 1 -0.3634 -1.0245 0.0804 30 1 -0.3633 0.5819 0.8471 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3812 0.4612 1.7512 34 1 1.4035 3.1329 -0.9878 35 1 3.3906 2.2417 -2.1164 36 1 2.3678 0.8711 -2.6099 37 1 3.2752 2.1401 -4.8071 38 1 0.9597 3.1627 -6.0598 39 1 1.9825 4.5335 -5.5671 40 1 2.5487 3.8976 -7.8620 41 1 3.9056 3.4766 -6.7898 42 1 4.3424 3.4646 -8.8427 43 1 5.6834 2.7875 -10.7920 44 1 5.5997 0.4639 -11.5991 45 1 2.8450 -0.5229 -8.4942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594008853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:00 Heat of formation + Delta-G solvation = -84.183770 kcal Electronic energy + Delta-G solvation = -25987.016773 eV Core-core repulsion = 22029.447008 eV Total energy + Delta-G solvation = -3957.569765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.32578 -40.68601 -38.84865 -38.15631 -37.32614 -35.87960 -34.59050 -32.72822 -32.16171 -31.35824 -30.33470 -28.63783 -26.35329 -25.34294 -24.52731 -23.68376 -22.54307 -21.75771 -21.13602 -19.51856 -19.27990 -17.90874 -17.64350 -17.24144 -16.93140 -16.84951 -16.48181 -16.04490 -15.82345 -15.61992 -15.55932 -15.19169 -14.78991 -14.66072 -14.57818 -14.22623 -14.08017 -13.67537 -13.53268 -13.34029 -13.07012 -13.02826 -12.82416 -12.67257 -12.62224 -12.20121 -12.00074 -11.95663 -11.89487 -11.87734 -11.82439 -11.62199 -10.91732 -10.63973 -10.33297 -10.17269 -9.91080 -9.31789 -9.15725 -8.57938 -6.27626 0.07808 0.30204 1.00721 1.55077 1.59108 1.62219 1.81247 2.04102 2.15955 2.58097 2.59585 3.21790 3.55905 3.61326 3.79042 3.87001 4.00295 4.05654 4.11555 4.18176 4.29358 4.31421 4.37683 4.41343 4.47928 4.55426 4.57267 4.74984 4.76316 4.79935 5.01858 5.11651 5.18466 5.24153 5.32416 5.35230 5.36779 5.52341 5.54503 5.69360 5.87601 6.07906 6.29820 6.38330 6.53304 6.58203 6.78732 7.21394 7.49528 8.80328 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018192 B = 0.001775 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.809311 B =15772.205571 C =16601.969047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 C 0.209 3.791 4 H -0.028 1.028 5 C -0.602 4.602 6 H 0.045 0.955 7 C -0.022 4.022 8 N -0.931 5.931 9 Si 1.108 2.892 10 H -0.285 1.285 11 H -0.274 1.274 12 H -0.275 1.275 13 N -0.667 5.667 14 C 0.041 3.959 15 C 0.519 3.481 16 O -0.568 6.568 17 N -0.718 5.718 18 C 0.121 3.879 19 C 0.051 3.949 20 O -0.327 6.327 21 C 0.133 3.867 22 C -0.204 4.204 23 C -0.063 4.063 24 C -0.155 4.155 25 C -0.008 4.008 26 Cl -0.069 7.069 27 C -0.167 4.167 28 H 0.050 0.950 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.035 0.965 33 H 0.260 0.740 34 H 0.336 0.664 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.414 0.586 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.159 0.841 43 H 0.166 0.834 44 H 0.150 0.850 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.744 2.924 -30.751 31.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.140 4.140 3 C 0.100 3.900 4 H -0.011 1.011 5 C -0.640 4.640 6 H 0.063 0.937 7 C -0.221 4.221 8 N -0.569 5.569 9 Si 0.931 3.069 10 H -0.210 1.210 11 H -0.199 1.199 12 H -0.201 1.201 13 N -0.299 5.299 14 C -0.092 4.092 15 C 0.306 3.694 16 O -0.446 6.446 17 N -0.372 5.372 18 C -0.002 4.002 19 C -0.023 4.023 20 O -0.241 6.241 21 C 0.087 3.913 22 C -0.222 4.222 23 C -0.081 4.081 24 C -0.173 4.173 25 C -0.035 4.035 26 Cl -0.040 7.040 27 C -0.186 4.186 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.154 0.846 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.250 0.750 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.177 0.823 43 H 0.183 0.817 44 H 0.168 0.832 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.546 2.616 -29.126 29.765 hybrid contribution 1.061 -0.031 -1.382 1.743 sum 6.608 2.585 -30.508 31.323 Atomic orbital electron populations 1.21320 0.95424 0.98940 1.01165 1.21412 0.97170 0.97272 0.98187 1.19137 0.90787 0.92170 0.87893 1.01065 1.22204 1.30495 1.18328 0.93007 0.93704 1.26966 0.94561 0.95820 1.04754 1.70918 1.23352 1.30382 1.32208 0.83023 0.75606 0.75955 0.72274 1.21042 1.19937 1.20060 1.60311 1.49368 1.16296 1.03916 1.21902 0.95832 1.00978 0.90475 1.20702 0.82956 0.81298 0.84439 1.90674 1.27050 1.42723 1.84130 1.45823 1.32156 1.49260 1.09989 1.21484 0.98048 0.96992 0.83694 1.23275 1.01581 0.80874 0.96592 1.86116 1.63795 1.30515 1.43660 1.18874 0.91809 0.93101 0.87510 1.21707 1.00442 1.00793 0.99290 1.21308 0.96732 0.95483 0.94577 1.21280 1.00791 0.93105 1.02151 1.20732 0.99751 0.86621 0.96375 1.98386 1.97635 1.19717 1.88273 1.20315 1.04112 0.95491 0.98678 0.93044 0.93972 0.94407 0.94199 0.94589 0.92938 0.84636 0.92166 0.87898 0.74982 0.91838 0.88387 0.87466 0.88814 0.82302 0.81650 0.83233 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.92 9.52 71.98 0.69 -4.24 16 2 C -0.10 -4.77 5.49 30.59 0.17 -4.61 16 3 C 0.21 10.37 1.93 44.17 0.09 10.45 16 4 H -0.03 -1.49 7.09 -2.39 -0.02 -1.51 16 5 C -0.60 -33.31 7.24 25.60 0.19 -33.12 16 6 H 0.04 2.53 7.67 -2.91 -0.02 2.51 16 7 C -0.02 -1.21 5.18 84.66 0.44 -0.77 16 8 N -0.93 -55.32 13.04 21.45 0.28 -55.04 16 9 Si 1.11 50.40 29.91 68.60 2.05 52.45 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 13 N -0.67 -29.09 5.24 -499.46 -2.61 -31.70 16 14 C 0.04 1.38 6.01 85.56 0.51 1.89 16 15 C 0.52 16.23 7.86 87.66 0.69 16.92 16 16 O -0.57 -22.43 16.12 -3.03 -0.05 -22.48 16 17 N -0.72 -15.19 5.50 -463.07 -2.55 -17.74 16 18 C 0.12 2.01 6.06 86.38 0.52 2.54 16 19 C 0.05 0.51 4.87 71.98 0.35 0.86 16 20 O -0.33 -5.20 10.08 -92.38 -0.93 -6.13 16 21 C 0.13 1.99 6.69 22.50 0.15 2.14 16 22 C -0.20 -1.98 9.04 22.37 0.20 -1.78 16 23 C -0.06 -0.52 10.04 22.25 0.22 -0.29 16 24 C -0.15 -1.72 9.83 22.31 0.22 -1.50 16 25 C -0.01 -0.12 6.32 22.31 0.14 0.02 16 26 Cl -0.07 -1.08 28.95 -2.72 -0.08 -1.16 16 27 C -0.17 -2.84 9.77 22.39 0.22 -2.62 16 28 H 0.05 2.23 7.70 -2.38 -0.02 2.21 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.82 7.13 -2.39 -0.02 1.80 16 31 H 0.04 1.67 7.62 -2.39 -0.02 1.65 16 32 H 0.04 1.85 6.38 -2.39 -0.02 1.84 16 33 H 0.26 15.50 6.04 -92.70 -0.56 14.94 16 34 H 0.34 15.55 7.80 -89.69 -0.70 14.85 16 35 H 0.06 1.92 7.97 -2.38 -0.02 1.90 16 36 H 0.10 3.24 7.61 -2.39 -0.02 3.22 16 37 H 0.41 6.84 8.47 -92.71 -0.79 6.05 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.11 0.56 7.65 -2.39 -0.02 0.54 16 41 H 0.09 0.58 7.68 -2.38 -0.02 0.56 16 42 H 0.16 0.69 6.30 -2.91 -0.02 0.67 16 43 H 0.17 0.33 8.06 -2.91 -0.02 0.30 16 44 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 45 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -71.62 387.69 0.65 -70.96 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: -0.25 Total: 24.96 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 4.79 Total: -14.12 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -4.88 Total: -104.48 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.98 Total: -28.62 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.05 Total: 52.45 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -71.62 0.65 -70.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.219 kcal (2) G-P(sol) polarization free energy of solvation -71.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds