Wall clock time and date at job start Sat Apr 11 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47180 * 2 1 4 4 H 1.08999 * 109.47456 * 175.21907 * 3 2 1 5 5 C 1.50706 * 109.47235 * 55.22277 * 3 2 1 6 6 H 1.08003 * 119.99894 * 245.71260 * 5 3 2 7 7 C 1.37874 * 120.00296 * 65.70567 * 5 3 2 8 8 N 1.31518 * 119.99775 * 5.51046 * 7 5 3 9 9 Si 1.86802 * 120.00173 * 185.50993 * 7 5 3 10 10 H 1.48506 * 109.46994 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47070 * 300.00207 * 9 7 5 12 12 H 1.48503 * 109.46910 * 60.00287 * 9 7 5 13 13 N 1.46903 * 109.47443 * 295.22093 * 3 2 1 14 14 C 1.46902 * 110.99663 * 279.80020 * 13 3 2 15 15 C 1.50703 * 109.46618 * 184.95285 * 14 13 3 16 16 O 1.21284 * 120.00144 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99570 * 180.02562 * 15 14 13 18 18 C 1.39929 * 119.99768 * 185.37022 * 17 15 14 19 19 C 1.38873 * 120.06741 * 214.48100 * 18 17 15 20 20 C 1.38107 * 119.92664 * 179.74706 * 19 18 17 21 21 C 1.38285 * 120.07246 * 0.52757 * 20 19 18 22 22 S 1.76193 * 119.93409 * 179.72306 * 21 20 19 23 23 C 1.81396 * 104.45087 * 270.02536 * 22 21 20 24 24 O 1.42105 * 104.27688 * 26.09569 * 22 21 20 25 25 O 1.42103 * 104.28005 * 153.95054 * 22 21 20 26 26 C 1.38285 * 120.13716 * 359.74634 * 21 20 19 27 27 C 1.38113 * 120.07162 * 359.97438 * 26 21 20 28 28 H 1.08998 * 109.47330 * 304.94892 * 1 2 3 29 29 H 1.09002 * 109.47471 * 64.94665 * 1 2 3 30 30 H 1.09000 * 109.47270 * 184.94730 * 1 2 3 31 31 H 1.08998 * 109.47006 * 239.99994 * 2 1 3 32 32 H 1.08999 * 109.47480 * 120.00184 * 2 1 3 33 33 H 0.96997 * 120.00068 * 355.15408 * 8 7 5 34 34 H 1.00896 * 111.00021 * 155.84740 * 13 3 2 35 35 H 1.08999 * 109.46901 * 304.95253 * 14 13 3 36 36 H 1.08994 * 109.46947 * 64.95308 * 14 13 3 37 37 H 0.97004 * 120.00001 * 5.36300 * 17 15 14 38 38 H 1.07996 * 120.03381 * 0.02562 * 19 18 17 39 39 H 1.07999 * 119.96675 * 180.27092 * 20 19 18 40 40 H 1.08991 * 109.47559 * 59.99561 * 23 22 21 41 41 H 1.09002 * 109.46978 * 180.02562 * 23 22 21 42 42 H 1.09006 * 109.46977 * 299.99296 * 23 22 21 43 43 H 1.07999 * 119.96287 * 180.02562 * 26 21 20 44 44 H 1.07998 * 120.03286 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4437 0.0856 5 6 1.4434 2.1863 1.1671 6 1 0.7592 3.0038 0.9936 7 6 1.7707 1.8230 2.4562 8 7 2.6846 0.9012 2.6676 9 14 0.9163 2.6402 3.9024 10 1 1.4439 2.0777 5.1714 11 1 1.1712 4.1027 3.8660 12 1 -0.5452 2.3903 3.8195 13 7 1.6468 2.1009 -1.2530 14 6 2.5540 1.7329 -2.3482 15 6 2.1949 2.5182 -3.5832 16 8 1.2742 3.3072 -3.5538 17 7 2.8968 2.3438 -4.7205 18 6 2.6379 3.1516 -5.8333 19 6 2.7472 2.6270 -7.1145 20 6 2.4859 3.4254 -8.2106 21 6 2.1264 4.7490 -8.0338 22 16 1.8010 5.7663 -9.4351 23 6 3.4100 6.4941 -9.8496 24 8 1.3921 4.8529 -10.4440 25 8 0.9140 6.7631 -8.9462 26 6 2.0223 5.2759 -6.7596 27 6 2.2766 4.4811 -5.6591 28 1 -0.3634 0.5887 0.8423 29 1 -0.3634 0.4352 -0.9310 30 1 -0.3634 -1.0238 0.0886 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.0777 0.4271 1.9183 34 1 1.6066 3.1025 -1.1379 35 1 3.5810 1.9578 -2.0604 36 1 2.4599 0.6669 -2.5552 37 1 3.5816 1.6583 -4.7675 38 1 3.0319 1.5945 -7.2533 39 1 2.5665 3.0169 -9.2071 40 1 4.1198 5.6996 -10.0796 41 1 3.3013 7.1467 -10.7158 42 1 3.7758 7.0738 -9.0021 43 1 1.7409 6.3098 -6.6247 44 1 2.1947 4.8931 -4.6642 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594009035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:07 Heat of formation + Delta-G solvation = -102.849165 kcal Electronic energy + Delta-G solvation = -26575.780136 eV Core-core repulsion = 22619.444685 eV Total energy + Delta-G solvation = -3956.335451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75462 -39.76866 -38.21471 -38.11877 -36.96053 -36.05049 -34.68046 -32.68267 -32.13429 -31.31235 -30.21213 -28.81688 -26.49296 -25.41611 -24.28519 -23.83261 -21.75149 -21.12903 -20.04651 -19.42041 -19.07204 -18.40173 -17.97931 -17.22524 -17.09932 -16.72509 -16.19840 -15.98218 -15.79554 -15.65945 -15.45231 -15.15385 -14.79222 -14.54067 -14.37144 -14.25348 -13.90596 -13.86232 -13.79110 -13.61570 -13.46089 -13.12563 -13.11006 -13.02556 -12.62249 -12.53480 -12.17209 -12.03307 -11.97055 -11.88275 -11.71707 -11.68689 -11.62915 -11.04377 -10.60477 -10.40809 -10.11849 -9.57828 -9.21180 -8.56174 -6.28306 -0.83511 -0.30984 0.24301 1.34611 1.54371 1.60520 1.72581 1.79809 1.97312 2.42521 2.56471 3.06742 3.20641 3.22080 3.45474 3.54588 3.77008 3.85875 4.14540 4.16481 4.22285 4.24873 4.30398 4.40712 4.44335 4.46591 4.53990 4.72347 4.77454 4.88782 4.98750 4.99764 5.04243 5.12413 5.16942 5.27402 5.35506 5.47150 5.69442 5.79213 5.85044 6.06304 6.19181 6.46982 6.54910 6.75200 6.94708 7.48102 8.81743 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.025673 B = 0.001964 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.387653 B =14255.981032 C =14735.454503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.103 4.103 3 C 0.210 3.790 4 H -0.027 1.027 5 C -0.597 4.597 6 H 0.043 0.957 7 C -0.020 4.020 8 N -0.935 5.935 9 Si 1.106 2.894 10 H -0.285 1.285 11 H -0.276 1.276 12 H -0.276 1.276 13 N -0.670 5.670 14 C 0.044 3.956 15 C 0.520 3.480 16 O -0.539 6.539 17 N -0.664 5.664 18 C 0.192 3.808 19 C -0.163 4.163 20 C -0.007 4.007 21 C -0.683 4.683 22 S 2.509 3.491 23 C -0.622 4.622 24 O -0.974 6.974 25 O -0.984 6.984 26 C -0.014 4.014 27 C -0.168 4.168 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.263 0.737 34 H 0.336 0.664 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.433 0.567 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.158 0.842 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.239 5.661 -27.101 28.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.141 4.141 3 C 0.101 3.899 4 H -0.009 1.009 5 C -0.635 4.635 6 H 0.061 0.939 7 C -0.220 4.220 8 N -0.573 5.573 9 Si 0.930 3.070 10 H -0.210 1.210 11 H -0.201 1.201 12 H -0.201 1.201 13 N -0.302 5.302 14 C -0.089 4.089 15 C 0.308 3.692 16 O -0.414 6.414 17 N -0.312 5.312 18 C 0.096 3.904 19 C -0.184 4.184 20 C -0.027 4.027 21 C -0.769 4.769 22 S 2.692 3.308 23 C -0.776 4.776 24 O -0.972 6.972 25 O -0.981 6.981 26 C -0.034 4.034 27 C -0.189 4.189 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.154 0.846 35 H 0.088 0.912 36 H 0.134 0.866 37 H 0.273 0.727 38 H 0.185 0.815 39 H 0.188 0.812 40 H 0.176 0.824 41 H 0.172 0.828 42 H 0.169 0.831 43 H 0.167 0.833 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.282 5.869 -25.869 27.260 hybrid contribution 1.652 -0.166 -0.406 1.710 sum 7.934 5.703 -26.275 28.033 Atomic orbital electron populations 1.21354 0.95732 0.98916 1.01062 1.21444 0.97001 0.97122 0.98578 1.19155 0.91693 0.92504 0.86547 1.00937 1.22156 1.30046 1.18445 0.92895 0.93917 1.26873 0.95449 0.96916 1.02719 1.70913 1.25620 1.25295 1.35438 0.83045 0.75480 0.75443 0.73079 1.21011 1.20140 1.20137 1.60330 1.50782 1.13881 1.05236 1.21930 0.96489 1.01194 0.89255 1.21124 0.80913 0.82322 0.84814 1.90732 1.29359 1.37101 1.84241 1.43577 1.39667 1.37481 1.10452 1.18281 0.94607 0.89801 0.87687 1.21353 1.05228 1.02089 0.89736 1.21115 0.90047 0.90893 1.00607 1.30631 1.19945 1.10494 1.15844 1.04772 0.78794 0.73992 0.73208 1.30023 1.18708 1.14883 1.14018 1.93533 1.81851 1.63920 1.57851 1.93539 1.63378 1.60678 1.80522 1.20931 0.91367 1.00519 0.90567 1.21286 1.04279 0.93286 1.00080 0.94426 0.93319 0.93989 0.93392 0.94413 0.92612 0.84590 0.91166 0.86576 0.72710 0.81549 0.81160 0.82356 0.82840 0.83146 0.83256 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.87 9.53 71.98 0.69 -4.19 16 2 C -0.10 -4.55 5.47 30.59 0.17 -4.38 16 3 C 0.21 9.93 1.92 44.17 0.08 10.02 16 4 H -0.03 -1.36 7.31 -2.39 -0.02 -1.38 16 5 C -0.60 -32.24 6.93 25.60 0.18 -32.07 16 6 H 0.04 2.38 7.75 -2.91 -0.02 2.35 16 7 C -0.02 -1.11 5.29 84.65 0.45 -0.66 16 8 N -0.93 -54.29 13.20 21.45 0.28 -54.00 16 9 Si 1.11 49.81 29.91 68.60 2.05 51.87 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 13 N -0.67 -27.58 5.54 -499.45 -2.77 -30.35 16 14 C 0.04 1.32 5.99 85.56 0.51 1.83 16 15 C 0.52 15.10 7.58 87.66 0.66 15.76 16 16 O -0.54 -20.46 13.88 -3.04 -0.04 -20.50 16 17 N -0.66 -13.31 5.34 -303.50 -1.62 -14.93 16 18 C 0.19 4.11 6.25 38.15 0.24 4.35 16 19 C -0.16 -2.51 9.97 22.39 0.22 -2.29 16 20 C -0.01 -0.11 9.46 22.25 0.21 0.10 16 21 C -0.68 -11.47 5.66 22.29 0.13 -11.34 16 22 S 2.51 34.13 5.80 -56.49 -0.33 33.81 16 23 C -0.62 -1.28 10.80 113.37 1.22 -0.05 16 24 O -0.97 -19.11 17.12 -127.65 -2.19 -21.30 16 25 O -0.98 -21.97 17.12 -127.65 -2.19 -24.16 16 26 C -0.01 -0.30 9.46 22.25 0.21 -0.09 16 27 C -0.17 -4.20 8.65 22.39 0.19 -4.01 16 28 H 0.04 1.80 6.89 -2.39 -0.02 1.78 16 29 H 0.05 2.04 7.89 -2.39 -0.02 2.02 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.82 7.13 -2.39 -0.02 1.80 16 32 H 0.04 1.84 6.17 -2.39 -0.01 1.82 16 33 H 0.26 15.16 5.62 -92.71 -0.52 14.63 16 34 H 0.34 14.84 7.88 -89.70 -0.71 14.13 16 35 H 0.07 1.95 7.95 -2.39 -0.02 1.93 16 36 H 0.12 3.06 7.20 -2.39 -0.02 3.04 16 37 H 0.43 5.06 8.82 -92.71 -0.82 4.24 16 38 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 39 H 0.17 1.54 7.56 -2.91 -0.02 1.52 16 40 H 0.16 -0.36 8.14 -2.40 -0.02 -0.38 16 41 H 0.15 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.15 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.15 2.77 7.56 -2.91 -0.02 2.75 16 44 H 0.12 3.51 6.53 -2.91 -0.02 3.49 16 Total: -1.00 -82.56 375.08 -1.86 -84.42 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -0.23 Total: 22.18 kcal Atomic # 6 Polarization: -32.19 SS G_CDS: 5.17 Total: -27.02 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -4.10 Total: -99.29 kcal Atomic # 8 Polarization: -61.55 SS G_CDS: -4.41 Total: -65.96 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.05 Total: 51.87 kcal Atomic # 16 Polarization: 34.13 SS G_CDS: -0.33 Total: 33.81 kcal Total: -82.56 -1.86 -84.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594009035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.431 kcal (2) G-P(sol) polarization free energy of solvation -82.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds