Wall clock time and date at job start Sat Apr 11 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 C 1.53002 * 109.47104 * 179.97438 * 3 2 1 5 5 S 1.81399 * 109.47078 * 180.02562 * 4 3 2 6 6 O 1.42104 * 110.54450 * 68.37885 * 5 4 3 7 7 O 1.42096 * 110.54558 * 291.62396 * 5 4 3 8 8 N 1.65601 * 104.44715 * 179.97438 * 5 4 3 9 9 C 1.46501 * 120.00143 * 65.00153 * 8 5 4 10 10 C 1.50693 * 109.47240 * 164.99363 * 9 8 5 11 11 O 1.21281 * 120.00369 * 0.02562 * 10 9 8 12 12 N 1.34786 * 120.00039 * 179.97438 * 10 9 8 13 13 C 1.39120 * 119.99860 * 184.37270 * 12 10 9 14 14 C 1.38647 * 120.28887 * 325.34680 * 13 12 10 15 15 C 1.38223 * 120.03661 * 180.26219 * 14 13 12 16 16 C 1.38864 * 120.61570 * 359.73851 * 15 14 13 17 17 C 1.36475 * 120.57506 * 0.02562 * 16 15 14 18 18 C 1.40732 * 119.94463 * 359.97438 * 17 16 15 19 19 C 1.41067 * 120.30097 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00158 * 154.83018 * 19 18 17 21 21 C 1.39960 * 120.00035 * 334.81866 * 19 18 17 22 22 N 1.30850 * 120.00172 * 334.82627 * 21 19 18 23 23 Si 1.86797 * 119.99964 * 154.81633 * 21 19 18 24 24 H 1.48493 * 109.47433 * 180.02562 * 23 21 19 25 25 H 1.48507 * 109.47399 * 300.00688 * 23 21 19 26 26 H 1.48501 * 109.46727 * 60.00450 * 23 21 19 27 27 H 1.09002 * 109.46610 * 59.99872 * 1 2 3 28 28 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46727 * 299.99827 * 1 2 3 30 30 H 1.09000 * 109.47252 * 240.00157 * 2 1 3 31 31 H 1.08995 * 109.47448 * 120.00275 * 2 1 3 32 32 H 1.08999 * 109.47187 * 60.00455 * 3 2 1 33 33 H 1.08999 * 109.47796 * 300.00020 * 3 2 1 34 34 H 1.09000 * 109.47252 * 60.00157 * 4 3 2 35 35 H 1.09006 * 109.47057 * 300.00001 * 4 3 2 36 36 H 0.97003 * 120.00364 * 244.99855 * 8 5 4 37 37 H 1.09004 * 109.47011 * 44.99527 * 9 8 5 38 38 H 1.08999 * 109.47192 * 284.99985 * 9 8 5 39 39 H 0.96996 * 119.99503 * 4.37567 * 12 10 9 40 40 H 1.08002 * 119.97971 * 359.97438 * 14 13 12 41 41 H 1.07995 * 119.69606 * 179.76870 * 15 14 13 42 42 H 1.07997 * 119.71651 * 180.02562 * 16 15 14 43 43 H 1.08000 * 120.02277 * 180.02562 * 17 16 15 44 44 H 0.97005 * 119.99936 * 354.62807 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 16 4.1747 3.1527 0.0014 6 8 3.8781 3.7860 1.2385 7 8 3.8791 3.7867 -1.2355 8 7 5.8243 3.0077 0.0028 9 6 6.5081 2.4097 -1.1466 10 6 7.9806 2.7214 -1.0732 11 8 8.4162 3.3781 -0.1513 12 7 8.8137 2.2696 -2.0315 13 6 10.1843 2.4791 -1.9170 14 6 10.6680 3.6417 -1.3368 15 6 12.0307 3.8469 -1.2306 16 6 12.9277 2.8944 -1.6959 17 6 12.4791 1.7388 -2.2669 18 6 11.0965 1.5053 -2.3872 19 6 10.6246 0.3137 -2.9766 20 1 9.6449 -0.0632 -2.7226 21 6 11.4258 -0.3799 -3.8908 22 7 12.3437 0.2575 -4.5716 23 14 11.1850 -2.2155 -4.1390 24 1 12.1513 -2.7090 -5.1529 25 1 11.4127 -2.9230 -2.8533 26 1 9.7998 -2.4741 -4.6076 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9338 0.9285 -0.8891 35 1 3.9330 0.9288 0.8909 36 1 6.3380 3.3188 0.7646 37 1 6.0954 2.8196 -2.0685 38 1 6.3643 1.3293 -1.1331 39 1 8.4576 1.7985 -2.8010 40 1 9.9795 4.3896 -0.9719 41 1 12.4015 4.7562 -0.7811 42 1 13.9895 3.0694 -1.6052 43 1 13.1846 1.0039 -2.6254 44 1 12.4175 1.2222 -4.5012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594354746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:22 Heat of formation + Delta-G solvation = -131.864195 kcal Electronic energy + Delta-G solvation = -26813.266467 eV Core-core repulsion = 22855.672829 eV Total energy + Delta-G solvation = -3957.593637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32402 -39.29217 -38.22313 -37.09557 -36.65908 -36.00421 -35.64476 -35.48224 -31.39082 -31.25463 -30.76149 -28.04169 -26.79331 -25.27293 -23.47570 -22.75772 -22.19493 -21.26354 -20.36917 -19.87493 -19.09657 -18.39132 -17.58840 -17.36516 -17.19749 -16.72589 -16.64782 -16.38670 -15.85108 -15.76069 -15.30867 -14.88500 -14.77056 -14.47221 -14.25300 -14.12493 -14.02415 -13.84243 -13.78428 -13.28246 -13.23109 -13.17043 -13.11825 -12.66899 -12.66182 -12.45611 -12.43967 -12.16442 -12.15152 -11.93797 -11.52510 -11.48013 -11.46908 -11.10417 -10.84623 -10.69832 -10.49065 -9.54492 -9.27873 -8.81787 -6.39490 -0.78746 0.75014 0.92688 1.57405 1.59683 1.68073 1.70982 1.84266 2.35145 2.37692 2.72380 2.79528 3.21175 3.51264 3.55921 3.64388 3.84269 4.05164 4.20188 4.31255 4.31693 4.40542 4.41007 4.51444 4.60158 4.61244 4.70478 4.75104 4.91710 4.96312 5.00112 5.08515 5.23193 5.29756 5.30954 5.45368 5.50052 5.68192 5.79845 5.87790 5.92509 6.03305 6.13938 6.35498 6.60922 6.86126 6.93886 7.30507 8.08063 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012103 B = 0.002796 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.839132 B =10011.645732 C =11978.516470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.116 4.116 3 C -0.126 4.126 4 C -0.604 4.604 5 S 2.619 3.381 6 O -0.995 6.995 7 O -0.991 6.991 8 N -1.114 6.114 9 C 0.101 3.899 10 C 0.493 3.507 11 O -0.570 6.570 12 N -0.631 5.631 13 C 0.001 3.999 14 C -0.088 4.088 15 C -0.245 4.245 16 C -0.096 4.096 17 C -0.229 4.229 18 C 0.066 3.934 19 C -0.539 4.539 20 H 0.089 0.911 21 C 0.006 3.994 22 N -0.816 5.816 23 Si 1.115 2.885 24 H -0.281 1.281 25 H -0.270 1.270 26 H -0.247 1.247 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.165 0.835 35 H 0.159 0.841 36 H 0.422 0.578 37 H 0.127 0.873 38 H 0.142 0.858 39 H 0.417 0.583 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.095 0.905 44 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.494 -5.627 4.141 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.155 4.155 3 C -0.166 4.166 4 C -0.737 4.737 5 S 2.717 3.283 6 O -0.985 6.985 7 O -0.981 6.981 8 N -0.874 5.874 9 C -0.029 4.029 10 C 0.280 3.720 11 O -0.449 6.449 12 N -0.275 5.275 13 C -0.094 4.094 14 C -0.109 4.109 15 C -0.265 4.265 16 C -0.115 4.115 17 C -0.249 4.249 18 C 0.061 3.939 19 C -0.567 4.567 20 H 0.107 0.893 21 C -0.211 4.211 22 N -0.439 5.439 23 Si 0.932 3.068 24 H -0.206 1.206 25 H -0.195 1.195 26 H -0.171 1.171 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.183 0.817 35 H 0.177 0.823 36 H 0.259 0.741 37 H 0.145 0.855 38 H 0.160 0.840 39 H 0.254 0.746 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.113 0.887 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.150 -5.647 3.773 20.318 hybrid contribution 0.312 1.193 0.874 1.512 sum -18.838 -4.454 4.648 19.907 Atomic orbital electron populations 1.21856 0.95415 1.02422 1.02179 1.21502 0.96190 0.94366 1.03470 1.21547 0.90063 1.00900 1.04053 1.30446 1.06628 1.21844 1.14801 1.04628 0.72083 0.78833 0.72773 1.93559 1.83235 1.75342 1.46396 1.93556 1.83559 1.74409 1.46598 1.55332 1.25869 1.78548 1.27682 1.21281 0.88116 1.02237 0.91258 1.21227 0.89792 0.79565 0.81373 1.90633 1.78123 1.40352 1.35820 1.42755 1.04516 1.56435 1.23797 1.17713 0.83117 0.95236 1.13291 1.20877 0.95538 0.95524 0.98920 1.20581 0.92804 1.01542 1.11571 1.20648 0.98768 0.94285 0.97753 1.20797 0.95208 0.99323 1.09539 1.17810 0.91452 0.91726 0.92865 1.20563 1.05669 1.06741 1.23704 0.89265 1.28357 0.90676 1.11098 0.90983 1.70579 1.28755 1.13025 1.31513 0.83018 0.78517 0.67678 0.77553 1.20573 1.19459 1.17106 0.92436 0.91819 0.92574 0.90563 0.90887 0.90367 0.89955 0.81748 0.82345 0.74130 0.85519 0.84012 0.74575 0.87255 0.86874 0.86900 0.88738 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.91 71.98 0.71 -0.68 16 2 C -0.12 -1.00 5.93 30.59 0.18 -0.82 16 3 C -0.13 -1.34 5.22 30.59 0.16 -1.18 16 4 C -0.60 -5.69 6.07 71.98 0.44 -5.25 16 5 S 2.62 50.91 5.46 -56.49 -0.31 50.60 16 6 O -0.99 -26.97 18.08 -127.65 -2.31 -29.28 16 7 O -0.99 -25.67 17.50 -127.65 -2.23 -27.90 16 8 N -1.11 -23.85 5.82 -190.79 -1.11 -24.96 16 9 C 0.10 2.04 6.61 85.63 0.57 2.60 16 10 C 0.49 16.22 7.74 87.65 0.68 16.90 16 11 O -0.57 -23.25 13.14 -3.03 -0.04 -23.29 16 12 N -0.63 -22.85 4.90 -302.28 -1.48 -24.33 16 13 C 0.00 0.05 6.33 38.88 0.25 0.29 16 14 C -0.09 -4.13 8.69 22.36 0.19 -3.93 16 15 C -0.25 -11.07 10.04 22.42 0.22 -10.85 16 16 C -0.10 -4.39 9.97 22.01 0.22 -4.17 16 17 C -0.23 -11.42 7.87 22.47 0.18 -11.24 16 18 C 0.07 3.25 5.32 -21.18 -0.11 3.13 16 19 C -0.54 -25.17 8.35 23.38 0.20 -24.98 16 20 H 0.09 3.78 7.39 -2.91 -0.02 3.76 16 21 C 0.01 0.28 4.95 85.26 0.42 0.70 16 22 N -0.82 -40.89 12.32 21.83 0.27 -40.62 16 23 Si 1.11 38.27 30.00 68.60 2.06 40.33 16 24 H -0.28 -9.89 7.11 99.48 0.71 -9.19 16 25 H -0.27 -8.97 7.11 99.48 0.71 -8.26 16 26 H -0.25 -7.33 7.11 99.48 0.71 -6.63 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.42 10.48 7.66 -96.74 -0.74 9.74 16 37 H 0.13 2.14 7.70 -2.38 -0.02 2.13 16 38 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.42 12.76 7.95 -92.71 -0.74 12.02 16 40 H 0.11 5.09 6.20 -2.91 -0.02 5.07 16 41 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 43 H 0.09 4.90 6.45 -2.91 -0.02 4.88 16 44 H 0.29 15.02 6.62 -92.70 -0.61 14.41 16 Total: -1.00 -73.65 379.06 -1.14 -74.80 By element: Atomic # 1 Polarization: 44.41 SS G_CDS: -0.29 Total: 44.12 kcal Atomic # 6 Polarization: -43.78 SS G_CDS: 4.30 Total: -39.47 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -2.32 Total: -89.91 kcal Atomic # 8 Polarization: -75.89 SS G_CDS: -4.58 Total: -80.47 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.06 Total: 40.33 kcal Atomic # 16 Polarization: 50.91 SS G_CDS: -0.31 Total: 50.60 kcal Total: -73.65 -1.14 -74.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594354746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.069 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds