Wall clock time and date at job start Sat Apr 11 2020 05:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47538 * 2 1 4 4 C 1.53001 * 109.47633 * 120.00509 * 2 1 3 5 5 N 1.46501 * 109.47255 * 180.02562 * 4 2 1 6 6 C 1.34771 * 119.99688 * 180.02562 * 5 4 2 7 7 O 1.21608 * 120.00523 * 359.97438 * 6 5 4 8 8 C 1.47441 * 119.99913 * 179.97438 * 6 5 4 9 9 C 1.39226 * 120.28243 * 355.81047 * 8 6 5 10 10 C 1.38213 * 120.09072 * 180.27747 * 9 8 6 11 11 C 1.38826 * 120.68056 * 359.69549 * 10 9 8 12 12 C 1.37604 * 120.56712 * 359.97438 * 11 10 9 13 13 C 1.40710 * 119.87873 * 0.02562 * 12 11 10 14 14 C 1.40892 * 120.32319 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99432 * 217.34848 * 14 13 12 16 16 C 1.40271 * 120.00148 * 37.34277 * 14 13 12 17 17 N 1.30635 * 119.99826 * 191.82026 * 16 14 13 18 18 Si 1.86801 * 119.99982 * 11.82253 * 16 14 13 19 19 H 1.48500 * 109.47025 * 267.42207 * 18 16 14 20 20 H 1.48494 * 109.47291 * 27.42230 * 18 16 14 21 21 H 1.48499 * 109.46807 * 147.42332 * 18 16 14 22 22 N 1.46508 * 109.47110 * 240.00480 * 2 1 3 23 23 S 1.65600 * 119.99671 * 37.94331 * 22 2 1 24 24 C 1.81397 * 104.45181 * 59.46712 * 23 22 2 25 25 O 1.42098 * 104.27429 * 175.53854 * 23 22 2 26 26 O 1.42101 * 104.27981 * 303.39531 * 23 22 2 27 27 H 1.09007 * 109.46858 * 299.99832 * 1 2 3 28 28 H 1.08996 * 109.47586 * 59.99187 * 1 2 3 29 29 H 1.09003 * 109.47309 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47314 * 187.36743 * 3 2 1 31 31 H 1.08998 * 109.46815 * 307.37308 * 3 2 1 32 32 H 1.09005 * 109.46504 * 67.36446 * 3 2 1 33 33 H 1.08996 * 109.47157 * 59.99591 * 4 2 1 34 34 H 1.08998 * 109.46957 * 299.99827 * 4 2 1 35 35 H 0.97001 * 120.00048 * 359.97438 * 5 4 2 36 36 H 1.08000 * 119.95601 * 359.97438 * 9 8 6 37 37 H 1.08000 * 119.65894 * 179.71664 * 10 9 8 38 38 H 1.07998 * 119.71877 * 180.02562 * 11 10 9 39 39 H 1.07996 * 120.05887 * 180.02562 * 12 11 10 40 40 H 0.97001 * 119.99421 * 180.02562 * 17 16 14 41 41 H 0.96995 * 119.99793 * 217.94846 * 22 2 1 42 42 H 1.09003 * 109.46860 * 51.30795 * 24 23 22 43 43 H 1.08991 * 109.47593 * 171.31470 * 24 23 22 44 44 H 1.09008 * 109.46764 * 291.31689 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5051 -0.7208 1.2494 6 6 4.1789 -1.3048 2.2599 7 8 3.5710 -1.8318 3.1717 8 6 5.6533 -1.3047 2.2599 9 6 6.3554 -0.7807 1.1778 10 6 7.7375 -0.7879 1.1794 11 6 8.4419 -1.3088 2.2563 12 6 7.7760 -1.8275 3.3431 13 6 6.3691 -1.8322 3.3663 14 6 5.6778 -2.3614 4.4740 15 1 4.7626 -2.9151 4.3250 16 6 6.1782 -2.1692 5.7703 17 7 5.6774 -2.8441 6.7704 18 14 7.5606 -0.9483 6.0663 19 1 8.8664 -1.6518 5.9934 20 1 7.5125 0.1147 5.0305 21 1 7.4019 -0.3373 7.4104 22 7 2.0183 -0.6905 -1.1963 23 16 1.2279 -0.5055 -2.6397 24 6 1.2996 1.2767 -2.9699 25 8 2.0295 -1.2180 -3.5719 26 8 -0.1065 -0.9080 -2.3627 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1220 1.4453 -0.1318 31 1 1.5731 1.9930 -0.8167 32 1 1.7882 1.9168 0.9486 33 1 1.6767 -1.7490 1.2491 34 1 1.6768 -0.2076 2.1392 35 1 3.9900 -0.3007 0.5219 36 1 5.8192 -0.3725 0.3338 37 1 8.2750 -0.3838 0.3343 38 1 9.5218 -1.3061 2.2414 39 1 8.3322 -2.2302 4.1766 40 1 6.0232 -2.7109 7.6669 41 1 2.8045 -1.2561 -1.1428 42 1 2.3297 1.6217 -2.8799 43 1 0.9369 1.4743 -3.9785 44 1 0.6753 1.8051 -2.2492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601140109.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:26 Heat of formation + Delta-G solvation = -78.114383 kcal Electronic energy + Delta-G solvation = -28122.948534 eV Core-core repulsion = 24167.685664 eV Total energy + Delta-G solvation = -3955.262871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.53676 -38.29209 -37.27338 -36.71950 -36.15197 -33.88355 -33.18482 -31.11198 -30.49502 -30.29027 -29.74104 -27.51240 -26.39209 -25.08166 -22.34916 -21.18530 -20.71878 -19.63009 -19.32645 -18.05644 -17.58035 -16.88519 -16.55850 -16.35369 -15.46724 -15.35903 -15.23580 -14.46466 -14.32563 -14.12876 -14.01257 -13.81642 -13.62626 -13.37136 -13.34371 -13.04602 -12.73491 -12.58719 -12.43552 -12.36027 -12.16042 -12.04548 -11.88978 -11.73905 -11.56442 -11.45934 -11.20099 -10.99052 -10.87928 -10.72527 -10.47839 -10.20075 -9.87061 -9.80887 -9.27854 -8.55343 -8.50212 -7.87091 -7.61912 -6.93211 -4.51404 0.01452 2.05818 2.42854 2.56236 3.06316 3.14383 3.25629 3.53577 3.76919 3.91706 3.93124 3.97245 4.24803 4.41920 4.55373 4.59581 4.70570 4.73582 4.95836 5.21767 5.30504 5.34493 5.49427 5.56378 5.63878 5.72252 5.80287 5.84139 5.95997 6.05160 6.06072 6.15035 6.35578 6.47550 6.75216 6.75957 6.99111 7.06085 7.19176 7.34755 7.54790 7.72032 7.97465 8.23034 8.45086 8.60288 8.83031 9.29496 10.03760 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019127 B = 0.003067 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.520573 B = 9128.393170 C = 9882.888421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.163 3.837 3 C -0.182 4.182 4 C 0.130 3.870 5 N -0.750 5.750 6 C 0.561 3.439 7 O -0.525 6.525 8 C -0.250 4.250 9 C -0.042 4.042 10 C -0.253 4.253 11 C -0.066 4.066 12 C -0.224 4.224 13 C 0.117 3.883 14 C -0.402 4.402 15 H 0.123 0.877 16 C 0.079 3.921 17 N -0.792 5.792 18 Si 0.906 3.094 19 H -0.268 1.268 20 H -0.244 1.244 21 H -0.288 1.288 22 N -1.110 6.110 23 S 2.614 3.386 24 C -0.680 4.680 25 O -0.962 6.962 26 O -0.953 6.953 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.391 0.609 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.287 0.713 41 H 0.421 0.579 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.752 10.959 -14.425 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.074 3.926 3 C -0.241 4.241 4 C 0.004 3.996 5 N -0.406 5.406 6 C 0.354 3.646 7 O -0.402 6.402 8 C -0.255 4.255 9 C -0.061 4.061 10 C -0.273 4.273 11 C -0.084 4.084 12 C -0.243 4.243 13 C 0.113 3.887 14 C -0.429 4.429 15 H 0.141 0.859 16 C -0.141 4.141 17 N -0.415 5.415 18 Si 0.732 3.268 19 H -0.194 1.194 20 H -0.167 1.167 21 H -0.215 1.215 22 N -0.870 5.870 23 S 2.706 3.294 24 C -0.829 4.829 25 O -0.953 6.953 26 O -0.943 6.943 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.226 0.774 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.098 0.902 41 H 0.257 0.743 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.834 9.893 -13.981 18.833 hybrid contribution 1.510 1.233 0.070 1.951 sum -6.325 11.126 -13.911 18.903 Atomic orbital electron populations 1.22506 0.92028 1.05223 1.03249 1.20527 0.94815 0.91894 0.85360 1.22658 1.02634 0.95068 1.03695 1.21383 0.81804 1.00946 0.95426 1.46002 1.05592 1.62223 1.26809 1.18345 0.87920 0.77531 0.80786 1.90745 1.70054 1.44574 1.34809 1.19408 0.90759 1.14717 1.00585 1.20749 0.94206 0.95798 0.95377 1.20285 0.93649 1.13067 1.00272 1.20753 0.97812 0.95973 0.93897 1.21195 0.94598 1.09034 0.99468 1.17544 0.90790 0.87939 0.92468 1.20160 1.09013 1.25028 0.88698 0.85913 1.26370 0.96346 0.95343 0.96058 1.69582 1.37350 1.33079 1.01526 0.86387 0.80420 0.82031 0.77935 1.19352 1.16723 1.21499 1.55681 1.45779 1.61917 1.23654 1.04717 0.74469 0.77283 0.72933 1.30806 1.11965 1.28227 1.11889 1.93618 1.69893 1.69777 1.61985 1.93657 1.37339 1.79833 1.83489 0.90527 0.91375 0.89748 0.91181 0.91775 0.90276 0.90943 0.90513 0.77426 0.88865 0.88550 0.88573 0.87719 0.90250 0.74264 0.84952 0.85456 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 7.09 37.15 0.26 -1.22 16 2 C 0.16 1.48 0.81 -131.82 -0.11 1.37 16 3 C -0.18 -1.30 8.05 37.16 0.30 -1.00 16 4 C 0.13 1.68 4.70 -4.04 -0.02 1.66 16 5 N -0.75 -11.38 4.83 -61.38 -0.30 -11.68 16 6 C 0.56 11.96 7.72 -12.51 -0.10 11.87 16 7 O -0.52 -13.34 13.55 5.27 0.07 -13.26 16 8 C -0.25 -5.60 5.92 -104.36 -0.62 -6.22 16 9 C -0.04 -0.80 9.52 -39.22 -0.37 -1.17 16 10 C -0.25 -4.78 10.03 -39.37 -0.39 -5.18 16 11 C -0.07 -1.33 10.01 -39.60 -0.40 -1.73 16 12 C -0.22 -5.17 7.09 -38.88 -0.28 -5.45 16 13 C 0.12 2.94 4.99 -106.54 -0.53 2.41 16 14 C -0.40 -11.07 8.26 -37.81 -0.31 -11.38 16 15 H 0.12 3.75 6.02 -52.49 -0.32 3.43 16 16 C 0.08 2.09 5.46 -17.30 -0.09 1.99 16 17 N -0.79 -21.25 13.92 55.56 0.77 -20.48 16 18 Si 0.91 20.37 24.59 -169.99 -4.18 16.19 16 19 H -0.27 -5.74 6.76 56.52 0.38 -5.36 16 20 H -0.24 -5.60 6.86 56.52 0.39 -5.22 16 21 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 22 N -1.11 -9.89 5.29 0.54 0.00 -9.89 16 23 S 2.61 22.77 5.63 -107.50 -0.60 22.16 16 24 C -0.68 -3.21 9.11 101.05 0.92 -2.29 16 25 O -0.96 -12.08 18.08 -57.54 -1.04 -13.12 16 26 O -0.95 -10.93 14.56 -57.54 -0.84 -11.77 16 27 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 28 H 0.07 0.50 5.19 -51.93 -0.27 0.23 16 29 H 0.08 0.87 7.71 -51.93 -0.40 0.47 16 30 H 0.07 0.50 7.08 -51.93 -0.37 0.14 16 31 H 0.06 0.30 4.77 -51.93 -0.25 0.06 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.39 4.87 5.01 -40.82 -0.20 4.67 16 36 H 0.09 1.38 6.42 -52.49 -0.34 1.04 16 37 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.11 2.40 5.23 -52.49 -0.27 2.12 16 40 H 0.29 6.91 8.29 -40.82 -0.34 6.57 16 41 H 0.42 3.91 8.00 -34.47 -0.28 3.64 16 42 H 0.13 0.47 8.10 -51.92 -0.42 0.05 16 43 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.13 0.46 5.56 -51.92 -0.29 0.17 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -34.75 354.14 -8.04 -42.79 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.53 Total: 10.04 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -1.74 Total: -16.33 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.48 Total: -42.05 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -1.81 Total: -38.15 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.18 Total: 16.19 kcal Atomic # 16 Polarization: 22.77 SS G_CDS: -0.60 Total: 22.16 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.75 -8.04 -42.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601140109.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.324 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds