Wall clock time and date at job start Sat Apr 11 2020 05:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46704 * 2 1 4 4 C 1.50698 * 109.47166 * 119.99910 * 2 1 3 5 5 O 1.21284 * 120.00017 * 240.00206 * 4 2 1 6 6 N 1.34780 * 120.00118 * 60.00217 * 4 2 1 7 7 C 1.46497 * 119.99874 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46992 * 180.02562 * 7 6 4 9 9 N 1.46505 * 109.47098 * 179.97438 * 8 7 6 10 10 S 1.65597 * 119.99934 * 162.57338 * 9 8 7 11 11 O 1.42107 * 106.40454 * 310.51158 * 10 9 8 12 12 O 1.42104 * 106.40160 * 177.58619 * 10 9 8 13 13 C 1.76210 * 107.21789 * 64.04783 * 10 9 8 14 14 C 1.37639 * 120.12468 * 112.85091 * 13 10 9 15 15 C 1.38617 * 120.24329 * 180.32029 * 14 13 10 16 16 C 1.38661 * 120.50055 * 359.67663 * 15 14 13 17 17 C 1.37588 * 120.24967 * 359.97438 * 16 15 14 18 18 C 1.40698 * 120.12517 * 292.54956 * 13 10 9 19 19 C 1.41388 * 120.24451 * 359.97438 * 18 13 10 20 20 H 1.08003 * 120.00654 * 317.14600 * 19 18 13 21 21 C 1.39953 * 119.99870 * 137.14784 * 19 18 13 22 22 N 1.30824 * 119.99948 * 152.52426 * 21 19 18 23 23 Si 1.86801 * 119.99776 * 332.52937 * 21 19 18 24 24 H 1.48498 * 109.46908 * 268.38320 * 23 21 19 25 25 H 1.48493 * 109.47244 * 28.38588 * 23 21 19 26 26 H 1.48501 * 109.46947 * 148.38622 * 23 21 19 27 27 H 1.09002 * 109.47120 * 299.99557 * 1 2 3 28 28 H 1.09000 * 109.47167 * 60.00337 * 1 2 3 29 29 H 1.09004 * 109.46559 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46725 * 240.00096 * 2 1 3 31 31 H 1.09005 * 109.46888 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47034 * 299.99745 * 3 2 1 33 33 H 1.08993 * 109.46939 * 60.00110 * 3 2 1 34 34 H 0.96997 * 119.99858 * 359.97438 * 6 4 2 35 35 H 1.09000 * 109.47769 * 59.99429 * 7 6 4 36 36 H 1.09005 * 109.46904 * 299.99648 * 7 6 4 37 37 H 1.08991 * 109.47419 * 59.99328 * 8 7 6 38 38 H 1.09005 * 109.46888 * 299.99509 * 8 7 6 39 39 H 0.96998 * 119.99843 * 342.57409 * 9 8 7 40 40 H 1.07995 * 119.87841 * 0.02562 * 14 13 10 41 41 H 1.07997 * 119.74971 * 179.69179 * 15 14 13 42 42 H 1.07996 * 119.87128 * 180.02562 * 16 15 14 43 43 H 1.07995 * 120.12886 * 180.02562 * 17 16 15 44 44 H 0.96998 * 119.99594 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -0.1209 2.0288 6 7 1.7068 -2.0008 1.4438 7 6 2.1947 -2.6911 2.6402 8 6 1.6854 -4.1339 2.6399 9 7 2.1738 -4.8245 3.8361 10 16 1.4547 -6.2315 4.3315 11 8 0.0560 -5.9812 4.3535 12 8 2.1828 -6.6757 5.4680 13 6 1.7258 -7.4290 3.0675 14 6 2.5333 -8.5172 3.3087 15 6 2.7537 -9.4572 2.3141 16 6 2.1595 -9.3170 1.0691 17 6 1.3428 -8.2409 0.8081 18 6 1.1126 -7.2797 1.8101 19 6 0.2756 -6.1695 1.5532 20 1 -0.4374 -5.8470 2.2975 21 6 0.3710 -5.4884 0.3343 22 7 -0.6705 -4.8598 -0.1470 23 14 1.9855 -5.4770 -0.6053 24 1 2.7837 -4.2910 -0.2035 25 1 2.7468 -6.7139 -0.2963 26 1 1.7093 -5.4170 -2.0632 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.1489 -2.4721 0.8055 35 1 1.8311 -2.1772 3.5300 36 1 3.2848 -2.6910 2.6406 37 1 2.0494 -4.6475 1.7501 38 1 0.5954 -4.1344 2.6392 39 1 2.9184 -4.4575 4.3378 40 1 3.0008 -8.6366 4.2749 41 1 3.3927 -10.3054 2.5104 42 1 2.3378 -10.0556 0.3018 43 1 0.8807 -8.1338 -0.1621 44 1 -0.6044 -4.3881 -0.9920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601291048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:29 Heat of formation + Delta-G solvation = -102.509184 kcal Electronic energy + Delta-G solvation = -28772.546542 eV Core-core repulsion = 24816.225833 eV Total energy + Delta-G solvation = -3956.320708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.80039 -38.01769 -36.57699 -35.99990 -34.98569 -34.48195 -34.00957 -33.45330 -30.80864 -30.15666 -28.26281 -27.07227 -25.63760 -23.63274 -22.27255 -21.79294 -21.21415 -19.85580 -18.68417 -17.92388 -17.30101 -17.11477 -16.40829 -15.96829 -15.55742 -15.45205 -15.13104 -14.74280 -14.43228 -14.32632 -13.82903 -13.63990 -13.54420 -13.30986 -13.14237 -12.81801 -12.40588 -12.35760 -12.21308 -12.01915 -11.89827 -11.64472 -11.42353 -11.30046 -11.24412 -11.20080 -11.17422 -11.12243 -10.92655 -10.77975 -10.39939 -10.19969 -9.67846 -9.59392 -9.46182 -9.00132 -8.77675 -8.32518 -7.78743 -7.32735 -4.93503 1.35479 1.96893 2.39612 2.72821 2.77443 2.86190 2.96185 3.23177 3.65469 3.92456 4.06601 4.52314 4.65679 4.81820 4.89164 4.92372 5.07148 5.31163 5.38350 5.46164 5.51499 5.67766 5.71284 5.75145 5.76477 5.85697 5.87167 6.07029 6.08962 6.10098 6.14579 6.29343 6.37728 6.41273 6.53987 6.66243 6.84202 6.99029 7.14259 7.35524 7.47429 7.52447 7.59657 7.72800 8.09180 8.24426 8.30496 8.43775 9.63889 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013909 B = 0.004558 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.617973 B = 6141.639301 C = 7228.720585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.130 4.130 4 C 0.516 3.484 5 O -0.546 6.546 6 N -0.723 5.723 7 C 0.106 3.894 8 C 0.113 3.887 9 N -1.117 6.117 10 S 2.710 3.290 11 O -0.964 6.964 12 O -0.994 6.994 13 C -0.761 4.761 14 C 0.006 3.994 15 C -0.243 4.243 16 C -0.059 4.059 17 C -0.198 4.198 18 C 0.166 3.834 19 C -0.499 4.499 20 H 0.136 0.864 21 C 0.101 3.899 22 N -0.770 5.770 23 Si 0.845 3.155 24 H -0.254 1.254 25 H -0.224 1.224 26 H -0.272 1.272 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.405 0.595 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.408 0.592 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.744 6.130 -3.878 8.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.139 4.139 3 C -0.188 4.188 4 C 0.302 3.698 5 O -0.424 6.424 6 N -0.375 5.375 7 C -0.019 4.019 8 C -0.013 4.013 9 N -0.874 5.874 10 S 2.806 3.194 11 O -0.954 6.954 12 O -0.985 6.985 13 C -0.854 4.854 14 C -0.014 4.014 15 C -0.263 4.263 16 C -0.077 4.077 17 C -0.217 4.217 18 C 0.162 3.838 19 C -0.526 4.526 20 H 0.153 0.847 21 C -0.122 4.122 22 N -0.391 5.391 23 Si 0.667 3.333 24 H -0.179 1.179 25 H -0.146 1.146 26 H -0.197 1.197 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.240 0.760 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.241 0.759 40 H 0.133 0.867 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.442 6.563 -2.762 7.909 hybrid contribution 0.974 -0.523 -1.541 1.897 sum 4.416 6.040 -4.303 8.631 Atomic orbital electron populations 1.21821 0.92584 1.03209 1.02850 1.21330 0.97946 0.97963 0.96662 1.21594 1.01616 0.93578 1.01985 1.20678 0.79930 0.81473 0.87686 1.90669 1.38246 1.66136 1.47308 1.45935 1.53648 1.12216 1.25693 1.21644 0.99453 0.92793 0.88044 1.21989 1.01666 0.90084 0.87560 1.55411 1.49997 1.42534 1.39439 1.00870 0.73346 0.72476 0.72701 1.93515 1.30570 1.84550 1.86751 1.93474 1.74205 1.81515 1.49266 1.30145 1.18923 1.18432 1.17948 1.20419 0.91842 0.91730 0.97419 1.20605 1.08487 1.02250 0.94957 1.20930 0.94482 0.96476 0.95861 1.21390 1.04239 0.96090 1.00006 1.17114 0.86310 0.91375 0.89010 1.20215 1.18208 1.11440 1.02729 0.84683 1.26072 0.97233 0.93625 0.95297 1.69844 1.28890 1.23016 1.17396 0.87225 0.84226 0.82769 0.79129 1.17910 1.14574 1.19728 0.91966 0.91385 0.91508 0.88609 0.92104 0.92145 0.91933 0.76005 0.90831 0.91326 0.90781 0.87628 0.75926 0.86701 0.87988 0.88195 0.87697 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.09 37.16 0.34 -1.16 16 2 C -0.12 -1.34 3.26 -91.77 -0.30 -1.64 16 3 C -0.13 -1.36 8.48 37.16 0.32 -1.04 16 4 C 0.52 7.73 7.15 -10.98 -0.08 7.65 16 5 O -0.55 -9.78 15.98 5.55 0.09 -9.69 16 6 N -0.72 -10.92 5.45 -60.29 -0.33 -11.25 16 7 C 0.11 1.65 5.83 -4.04 -0.02 1.63 16 8 C 0.11 1.99 4.15 -4.04 -0.02 1.97 16 9 N -1.12 -19.06 5.99 -10.61 -0.06 -19.12 16 10 S 2.71 55.35 5.44 -107.50 -0.58 54.77 16 11 O -0.96 -22.38 15.09 -57.17 -0.86 -23.25 16 12 O -0.99 -21.13 16.97 -57.17 -0.97 -22.10 16 13 C -0.76 -16.51 5.93 -38.87 -0.23 -16.74 16 14 C 0.01 0.12 9.54 -39.66 -0.38 -0.26 16 15 C -0.24 -4.69 10.05 -39.29 -0.39 -5.08 16 16 C -0.06 -1.15 10.02 -39.66 -0.40 -1.55 16 17 C -0.20 -4.24 6.94 -38.87 -0.27 -4.51 16 18 C 0.17 3.76 4.57 -106.83 -0.49 3.27 16 19 C -0.50 -11.38 5.13 -37.74 -0.19 -11.57 16 20 H 0.14 3.40 5.40 -52.48 -0.28 3.11 16 21 C 0.10 2.12 4.23 -17.34 -0.07 2.05 16 22 N -0.77 -16.20 13.93 55.55 0.77 -15.43 16 23 Si 0.84 15.89 24.35 -169.99 -4.14 11.75 16 24 H -0.25 -4.46 6.95 56.52 0.39 -4.06 16 25 H -0.22 -4.45 5.65 56.52 0.32 -4.13 16 26 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.72 7.56 -51.93 -0.39 0.32 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.40 5.92 7.89 -40.82 -0.32 5.60 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.36 3.19 -51.93 -0.17 1.20 16 38 H 0.11 2.03 5.94 -51.93 -0.31 1.72 16 39 H 0.41 5.70 8.67 -34.47 -0.30 5.40 16 40 H 0.12 2.15 7.32 -52.49 -0.38 1.76 16 41 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.10 2.17 7.06 -52.49 -0.37 1.80 16 44 H 0.29 5.37 8.30 -40.82 -0.34 5.04 16 LS Contribution 359.77 15.07 5.42 5.42 Total: -1.00 -28.64 359.77 -8.83 -37.47 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -5.97 Total: 18.41 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -2.19 Total: -26.99 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.38 Total: -45.79 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -1.74 Total: -55.04 kcal Atomic # 14 Polarization: 15.89 SS G_CDS: -4.14 Total: 11.75 kcal Atomic # 16 Polarization: 55.35 SS G_CDS: -0.58 Total: 54.77 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.64 -8.83 -37.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601291048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.037 kcal (2) G-P(sol) polarization free energy of solvation -28.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds