Wall clock time and date at job start Sat Apr 11 2020 05:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46704 * 2 1 4 4 C 1.50698 * 109.47166 * 119.99910 * 2 1 3 5 5 O 1.21284 * 120.00017 * 240.00206 * 4 2 1 6 6 N 1.34780 * 120.00118 * 60.00217 * 4 2 1 7 7 C 1.46497 * 119.99874 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46992 * 180.02562 * 7 6 4 9 9 N 1.46505 * 109.47098 * 179.97438 * 8 7 6 10 10 S 1.65597 * 119.99934 * 162.57338 * 9 8 7 11 11 O 1.42107 * 106.40454 * 310.51158 * 10 9 8 12 12 O 1.42104 * 106.40160 * 177.58619 * 10 9 8 13 13 C 1.76210 * 107.21789 * 64.04783 * 10 9 8 14 14 C 1.37639 * 120.12468 * 112.85091 * 13 10 9 15 15 C 1.38617 * 120.24329 * 180.32029 * 14 13 10 16 16 C 1.38661 * 120.50055 * 359.67663 * 15 14 13 17 17 C 1.37588 * 120.24967 * 359.97438 * 16 15 14 18 18 C 1.40698 * 120.12517 * 292.54956 * 13 10 9 19 19 C 1.41388 * 120.24451 * 359.97438 * 18 13 10 20 20 H 1.08003 * 120.00654 * 317.14600 * 19 18 13 21 21 C 1.39953 * 119.99870 * 137.14784 * 19 18 13 22 22 N 1.30824 * 119.99948 * 152.52426 * 21 19 18 23 23 Si 1.86801 * 119.99776 * 332.52937 * 21 19 18 24 24 H 1.48498 * 109.46908 * 268.38320 * 23 21 19 25 25 H 1.48493 * 109.47244 * 28.38588 * 23 21 19 26 26 H 1.48501 * 109.46947 * 148.38622 * 23 21 19 27 27 H 1.09002 * 109.47120 * 299.99557 * 1 2 3 28 28 H 1.09000 * 109.47167 * 60.00337 * 1 2 3 29 29 H 1.09004 * 109.46559 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46725 * 240.00096 * 2 1 3 31 31 H 1.09005 * 109.46888 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47034 * 299.99745 * 3 2 1 33 33 H 1.08993 * 109.46939 * 60.00110 * 3 2 1 34 34 H 0.96997 * 119.99858 * 359.97438 * 6 4 2 35 35 H 1.09000 * 109.47769 * 59.99429 * 7 6 4 36 36 H 1.09005 * 109.46904 * 299.99648 * 7 6 4 37 37 H 1.08991 * 109.47419 * 59.99328 * 8 7 6 38 38 H 1.09005 * 109.46888 * 299.99509 * 8 7 6 39 39 H 0.96998 * 119.99843 * 342.57409 * 9 8 7 40 40 H 1.07995 * 119.87841 * 0.02562 * 14 13 10 41 41 H 1.07997 * 119.74971 * 179.69179 * 15 14 13 42 42 H 1.07996 * 119.87128 * 180.02562 * 16 15 14 43 43 H 1.07995 * 120.12886 * 180.02562 * 17 16 15 44 44 H 0.96998 * 119.99594 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -0.1209 2.0288 6 7 1.7068 -2.0008 1.4438 7 6 2.1947 -2.6911 2.6402 8 6 1.6854 -4.1339 2.6399 9 7 2.1738 -4.8245 3.8361 10 16 1.4547 -6.2315 4.3315 11 8 0.0560 -5.9812 4.3535 12 8 2.1828 -6.6757 5.4680 13 6 1.7258 -7.4290 3.0675 14 6 2.5333 -8.5172 3.3087 15 6 2.7537 -9.4572 2.3141 16 6 2.1595 -9.3170 1.0691 17 6 1.3428 -8.2409 0.8081 18 6 1.1126 -7.2797 1.8101 19 6 0.2756 -6.1695 1.5532 20 1 -0.4374 -5.8470 2.2975 21 6 0.3710 -5.4884 0.3343 22 7 -0.6705 -4.8598 -0.1470 23 14 1.9855 -5.4770 -0.6053 24 1 2.7837 -4.2910 -0.2035 25 1 2.7468 -6.7139 -0.2963 26 1 1.7093 -5.4170 -2.0632 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.1489 -2.4721 0.8055 35 1 1.8311 -2.1772 3.5300 36 1 3.2848 -2.6910 2.6406 37 1 2.0494 -4.6475 1.7501 38 1 0.5954 -4.1344 2.6392 39 1 2.9184 -4.4575 4.3378 40 1 3.0008 -8.6366 4.2749 41 1 3.3927 -10.3054 2.5104 42 1 2.3378 -10.0556 0.3018 43 1 0.8807 -8.1338 -0.1621 44 1 -0.6044 -4.3881 -0.9920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601291048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:29 Heat of formation + Delta-G solvation = -124.171551 kcal Electronic energy + Delta-G solvation = -28773.485893 eV Core-core repulsion = 24816.225833 eV Total energy + Delta-G solvation = -3957.260059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98501 -39.60245 -38.21315 -37.43388 -36.71596 -35.57112 -35.48348 -34.78536 -32.41231 -31.74115 -29.55593 -27.92069 -27.24308 -24.79184 -23.74332 -23.18942 -22.77763 -20.98127 -20.25791 -19.55522 -18.78922 -18.34400 -17.95292 -17.40208 -16.94570 -16.69884 -16.64300 -16.02829 -15.94881 -15.76247 -15.18802 -14.98377 -14.95428 -14.75473 -14.56735 -13.97723 -13.76507 -13.72897 -13.33989 -13.19859 -13.15821 -13.04362 -12.96429 -12.91720 -12.84834 -12.71714 -12.40142 -12.31761 -12.07613 -12.00298 -11.96281 -11.75582 -11.21024 -11.05189 -10.85870 -10.37595 -10.13830 -9.91345 -9.40330 -8.92620 -6.60707 -0.25389 0.36209 0.80597 1.28458 1.35710 1.44043 1.56666 1.97937 2.13940 2.45589 2.49867 2.89603 3.30223 3.60501 3.67353 3.84505 3.98515 4.03853 4.11192 4.25678 4.36553 4.40681 4.49517 4.61395 4.64194 4.75770 4.80638 4.86542 4.89587 4.93149 4.97942 5.04038 5.08179 5.26785 5.28412 5.30610 5.39130 5.41582 5.57833 5.78388 5.88354 6.12999 6.21416 6.38960 6.41316 6.60475 6.76016 7.12717 8.10430 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013909 B = 0.004558 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.617973 B = 6141.639301 C = 7228.720585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.127 4.127 4 C 0.511 3.489 5 O -0.579 6.579 6 N -0.723 5.723 7 C 0.109 3.891 8 C 0.120 3.880 9 N -1.104 6.104 10 S 2.725 3.275 11 O -0.997 6.997 12 O -1.004 7.004 13 C -0.777 4.777 14 C -0.009 4.009 15 C -0.239 4.239 16 C -0.057 4.057 17 C -0.219 4.219 18 C 0.150 3.850 19 C -0.517 4.517 20 H 0.102 0.898 21 C 0.088 3.912 22 N -0.792 5.792 23 Si 0.883 3.117 24 H -0.236 1.236 25 H -0.238 1.238 26 H -0.263 1.263 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.407 0.593 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.423 0.577 40 H 0.129 0.871 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.106 0.894 44 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.166 6.062 -5.474 9.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 C -0.185 4.185 4 C 0.299 3.701 5 O -0.459 6.459 6 N -0.376 5.376 7 C -0.016 4.016 8 C -0.007 4.007 9 N -0.865 5.865 10 S 2.821 3.179 11 O -0.987 6.987 12 O -0.994 6.994 13 C -0.871 4.871 14 C -0.029 4.029 15 C -0.259 4.259 16 C -0.076 4.076 17 C -0.239 4.239 18 C 0.146 3.854 19 C -0.545 4.545 20 H 0.120 0.880 21 C -0.134 4.134 22 N -0.414 5.414 23 Si 0.703 3.297 24 H -0.160 1.160 25 H -0.161 1.161 26 H -0.187 1.187 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.134 0.866 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.243 0.757 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.259 0.741 40 H 0.147 0.853 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.124 0.876 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.857 6.498 -4.353 9.207 hybrid contribution 0.520 -0.573 -1.005 1.268 sum 5.378 5.925 -5.357 9.630 Atomic orbital electron populations 1.21821 0.91614 1.02959 1.03782 1.21432 0.98630 0.98191 0.95324 1.21596 1.01041 0.93056 1.02788 1.21401 0.79146 0.81097 0.88413 1.90650 1.39821 1.66687 1.48754 1.46000 1.53599 1.12518 1.25449 1.21562 0.99910 0.91519 0.88637 1.21830 1.00493 0.91163 0.87216 1.55034 1.50331 1.41568 1.39563 1.00240 0.72579 0.72742 0.72342 1.93477 1.32897 1.85140 1.87212 1.93448 1.74146 1.81981 1.49845 1.30307 1.19488 1.19487 1.17836 1.20740 0.91849 0.91714 0.98605 1.21050 1.07928 1.02566 0.94352 1.21343 0.93100 0.96262 0.96863 1.21531 1.05492 0.96837 1.00022 1.17271 0.86712 0.91626 0.89822 1.19994 1.18710 1.12688 1.03061 0.88020 1.26391 0.98944 0.92862 0.95198 1.69817 1.29995 1.23304 1.18294 0.86648 0.81650 0.82725 0.78681 1.16023 1.16080 1.18719 0.92693 0.88835 0.92339 0.86633 0.92995 0.89295 0.93156 0.75713 0.90725 0.90374 0.91287 0.89721 0.74052 0.85317 0.84622 0.84746 0.87589 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.09 71.98 0.65 -2.02 16 2 C -0.11 -2.39 3.26 -11.54 -0.04 -2.43 16 3 C -0.13 -2.42 8.48 71.98 0.61 -1.81 16 4 C 0.51 14.86 7.15 87.66 0.63 15.48 16 5 O -0.58 -20.52 15.98 -3.04 -0.05 -20.57 16 6 N -0.72 -21.38 5.45 -463.05 -2.52 -23.90 16 7 C 0.11 3.37 5.83 86.38 0.50 3.87 16 8 C 0.12 4.22 4.15 86.38 0.36 4.58 16 9 N -1.10 -37.80 5.99 -187.48 -1.12 -38.93 16 10 S 2.73 112.90 5.44 -56.49 -0.31 112.60 16 11 O -1.00 -48.15 15.09 -128.00 -1.93 -50.08 16 12 O -1.00 -42.50 16.97 -128.00 -2.17 -44.68 16 13 C -0.78 -33.71 5.93 22.73 0.13 -33.58 16 14 C -0.01 -0.37 9.54 22.22 0.21 -0.16 16 15 C -0.24 -8.57 10.05 22.46 0.23 -8.35 16 16 C -0.06 -2.10 10.02 22.22 0.22 -1.88 16 17 C -0.22 -9.22 6.94 22.73 0.16 -9.06 16 18 C 0.15 6.81 4.57 -21.29 -0.10 6.71 16 19 C -0.52 -24.18 5.13 23.46 0.12 -24.06 16 20 H 0.10 5.40 5.40 -2.91 -0.02 5.39 16 21 C 0.09 3.72 4.23 85.26 0.36 4.08 16 22 N -0.79 -33.40 13.93 21.83 0.30 -33.10 16 23 Si 0.88 31.69 24.35 68.60 1.67 33.36 16 24 H -0.24 -7.68 6.95 99.48 0.69 -6.99 16 25 H -0.24 -9.10 5.65 99.48 0.56 -8.54 16 26 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.18 7.56 -2.38 -0.02 1.17 16 30 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 34 H 0.41 11.64 7.89 -92.71 -0.73 10.91 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.07 2.53 3.19 -2.39 -0.01 2.52 16 38 H 0.08 3.39 5.94 -2.38 -0.01 3.37 16 39 H 0.42 11.60 8.67 -96.75 -0.84 10.77 16 40 H 0.13 4.61 7.32 -2.91 -0.02 4.59 16 41 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 42 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 43 H 0.11 4.31 7.06 -2.91 -0.02 4.29 16 44 H 0.30 11.03 8.30 -92.71 -0.77 10.26 16 Total: -1.00 -61.85 359.77 -2.76 -64.60 By element: Atomic # 1 Polarization: 49.98 SS G_CDS: -0.68 Total: 49.30 kcal Atomic # 6 Polarization: -52.65 SS G_CDS: 4.05 Total: -48.60 kcal Atomic # 7 Polarization: -92.59 SS G_CDS: -3.34 Total: -95.93 kcal Atomic # 8 Polarization: -111.18 SS G_CDS: -4.15 Total: -115.33 kcal Atomic # 14 Polarization: 31.69 SS G_CDS: 1.67 Total: 33.36 kcal Atomic # 16 Polarization: 112.90 SS G_CDS: -0.31 Total: 112.60 kcal Total: -61.85 -2.76 -64.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601291048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.567 kcal (2) G-P(sol) polarization free energy of solvation -61.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds