Wall clock time and date at job start Sat Apr 11 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34781 * 119.99745 * 2 1 4 4 O 1.21283 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00159 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47029 * 59.99778 * 5 3 2 7 7 C 1.53007 * 109.46946 * 300.00219 * 5 3 2 8 8 C 1.52993 * 109.47241 * 180.02562 * 5 3 2 9 9 N 1.46506 * 109.47203 * 179.97438 * 8 5 3 10 10 S 1.65596 * 120.00156 * 163.89335 * 9 8 5 11 11 O 1.42101 * 106.40597 * 178.86264 * 10 9 8 12 12 O 1.42107 * 106.39981 * 311.78091 * 10 9 8 13 13 C 1.76201 * 107.21969 * 65.31909 * 10 9 8 14 14 C 1.37641 * 120.12605 * 112.07096 * 13 10 9 15 15 C 1.38610 * 120.24333 * 179.97438 * 14 13 10 16 16 C 1.38656 * 120.50521 * 0.02562 * 15 14 13 17 17 C 1.37589 * 120.24884 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12599 * 291.79353 * 13 10 9 19 19 C 1.41392 * 120.24614 * 0.02562 * 18 13 10 20 20 H 1.08000 * 119.99673 * 327.98809 * 19 18 13 21 21 C 1.39949 * 120.00383 * 147.99581 * 19 18 13 22 22 N 1.30822 * 120.00170 * 165.61928 * 21 19 18 23 23 Si 1.86801 * 119.99678 * 345.61694 * 21 19 18 24 24 H 1.48503 * 109.46783 * 94.80097 * 23 21 19 25 25 H 1.48497 * 109.46798 * 214.80029 * 23 21 19 26 26 H 1.48493 * 109.47133 * 334.80308 * 23 21 19 27 27 H 1.09004 * 109.46929 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47276 * 299.99858 * 1 2 3 29 29 H 1.08996 * 109.47620 * 60.00022 * 1 2 3 30 30 H 0.97002 * 120.00379 * 180.02562 * 2 1 3 31 31 H 1.09005 * 109.47251 * 180.02562 * 6 5 3 32 32 H 1.08993 * 109.47747 * 300.00009 * 6 5 3 33 33 H 1.09008 * 109.47093 * 60.00411 * 6 5 3 34 34 H 1.08996 * 109.46848 * 299.99883 * 7 5 3 35 35 H 1.09004 * 109.47035 * 59.99891 * 7 5 3 36 36 H 1.08995 * 109.46915 * 179.97438 * 7 5 3 37 37 H 1.09001 * 109.47280 * 60.00421 * 8 5 3 38 38 H 1.08996 * 109.47426 * 299.99566 * 8 5 3 39 39 H 0.96996 * 119.99657 * 343.61805 * 9 8 5 40 40 H 1.07999 * 119.87615 * 359.97438 * 14 13 10 41 41 H 1.08007 * 119.74693 * 179.97438 * 15 14 13 42 42 H 1.08004 * 119.87348 * 179.97438 * 16 15 14 43 43 H 1.08005 * 120.13004 * 179.97438 * 17 16 15 44 44 H 0.96996 * 120.00147 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1674 -0.0006 6 6 4.1554 0.4464 -1.2501 7 6 4.1564 0.4458 1.2483 8 6 4.1557 2.6098 0.0002 9 7 5.6208 2.6099 0.0002 10 16 6.4487 3.9880 -0.3969 11 8 7.8297 3.6747 -0.2784 12 8 5.8628 4.4767 -1.5957 13 6 6.1008 5.1832 0.8502 14 6 7.0941 5.5934 1.7102 15 6 6.8232 6.5339 2.6917 16 6 5.5516 7.0715 2.8197 17 6 4.5430 6.6753 1.9717 18 6 4.8081 5.7261 0.9669 19 6 3.7812 5.3162 0.0857 20 1 4.0209 5.0345 -0.9290 21 6 2.4541 5.2755 0.5282 22 7 1.4787 5.1742 -0.3376 23 14 2.0757 5.3660 2.3552 24 1 1.7904 6.7737 2.7325 25 1 0.8914 4.5227 2.6577 26 1 3.2444 4.8737 3.1278 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.9501 -0.8400 -0.0004 31 1 5.2454 0.4461 -1.2504 32 1 3.7922 -0.5812 -1.2503 33 1 3.7917 0.9605 -2.1399 34 1 3.7933 0.9594 2.1385 35 1 3.7930 -0.5819 1.2482 36 1 5.2463 0.4455 1.2477 37 1 3.7928 3.1231 0.8907 38 1 3.7921 3.1242 -0.8893 39 1 6.1058 1.8039 0.2368 40 1 8.0882 5.1810 1.6198 41 1 7.6086 6.8498 3.3626 42 1 5.3517 7.8033 3.5884 43 1 3.5531 7.0950 2.0734 44 1 0.5589 5.1464 -0.0310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601373951.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:33 Heat of formation + Delta-G solvation = -92.534148 kcal Electronic energy + Delta-G solvation = -29833.486723 eV Core-core repulsion = 25877.598565 eV Total energy + Delta-G solvation = -3955.888158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.92456 -37.80333 -36.53496 -36.12333 -34.83951 -34.44427 -33.72776 -32.21703 -30.57535 -30.00706 -27.28500 -26.77224 -25.86243 -25.06152 -22.03993 -21.88498 -21.05919 -19.33117 -18.64009 -17.59481 -17.36710 -16.52789 -16.20303 -15.75294 -15.29467 -15.12991 -14.98975 -14.34291 -14.13436 -13.98157 -13.79198 -13.53288 -13.42812 -13.15168 -12.81818 -12.62782 -12.28698 -12.15751 -12.06289 -12.00282 -11.88091 -11.67031 -11.36187 -11.24313 -11.18373 -11.07818 -10.94749 -10.83809 -10.62291 -10.54279 -10.06831 -9.84905 -9.39379 -9.33185 -9.16833 -8.94923 -8.60353 -8.14528 -7.70038 -7.01632 -4.70912 1.54787 2.18876 2.65670 2.96506 3.05633 3.18307 3.23920 3.34338 3.89734 4.05206 4.40939 4.69522 4.79079 4.87657 5.04581 5.15606 5.23082 5.35585 5.53438 5.54644 5.58951 5.76626 5.80488 5.88287 5.88837 5.91885 6.00344 6.15544 6.25484 6.28109 6.35890 6.49919 6.53593 6.58855 6.77283 6.93149 7.08139 7.20427 7.33559 7.53532 7.61203 7.66507 7.70012 7.95631 8.30633 8.43710 8.52420 8.67061 9.95840 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011751 B = 0.006433 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.226504 B = 4351.673939 C = 5775.879542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.742 5.742 3 C 0.514 3.486 4 O -0.494 6.494 5 C -0.094 4.094 6 C -0.138 4.138 7 C -0.140 4.140 8 C 0.151 3.849 9 N -1.122 6.122 10 S 2.707 3.293 11 O -1.000 7.000 12 O -0.967 6.967 13 C -0.775 4.775 14 C 0.020 3.980 15 C -0.265 4.265 16 C -0.047 4.047 17 C -0.233 4.233 18 C 0.156 3.844 19 C -0.457 4.457 20 H 0.135 0.865 21 C 0.098 3.902 22 N -0.740 5.740 23 Si 0.900 3.100 24 H -0.272 1.272 25 H -0.286 1.286 26 H -0.243 1.243 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.396 0.604 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.402 0.598 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 -12.726 2.953 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.396 5.396 3 C 0.298 3.702 4 O -0.366 6.366 5 C -0.099 4.099 6 C -0.196 4.196 7 C -0.198 4.198 8 C 0.025 3.975 9 N -0.880 5.880 10 S 2.804 3.196 11 O -0.991 6.991 12 O -0.957 6.957 13 C -0.870 4.870 14 C 0.000 4.000 15 C -0.286 4.286 16 C -0.065 4.065 17 C -0.252 4.252 18 C 0.151 3.849 19 C -0.483 4.483 20 H 0.152 0.848 21 C -0.129 4.129 22 N -0.358 5.358 23 Si 0.727 3.273 24 H -0.198 1.198 25 H -0.213 1.213 26 H -0.166 1.166 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.229 0.771 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.236 0.764 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.689 -11.720 1.971 12.004 hybrid contribution -0.374 -0.367 1.701 1.780 sum -2.063 -12.088 3.672 12.800 Atomic orbital electron populations 1.21448 0.80129 1.01432 1.02332 1.45794 1.07257 1.08696 1.77885 1.20501 0.89600 0.83773 0.76349 1.90890 1.69649 1.30285 1.45756 1.21078 0.91950 0.99227 0.97652 1.21840 1.02173 0.99046 0.96533 1.21869 1.02023 0.99347 0.96578 1.21577 0.77561 0.92508 1.05807 1.55651 1.15625 1.28306 1.88374 1.00850 0.71329 0.72859 0.74563 1.93450 1.32622 1.84796 1.88194 1.93505 1.77854 1.79678 1.44696 1.29777 1.03640 1.26957 1.26628 1.20341 0.96158 0.92603 0.90935 1.20440 0.96794 1.06900 1.04443 1.20796 0.93600 0.96282 0.95868 1.21186 0.98417 1.03480 1.02113 1.17068 0.90277 0.87806 0.89743 1.20536 0.90247 1.36223 1.01307 0.84799 1.26002 0.95505 0.91312 1.00099 1.69530 1.01510 1.27478 1.37308 0.86491 0.79105 0.78487 0.83236 1.19845 1.21284 1.16582 0.91302 0.92540 0.92316 0.77058 0.91169 0.92701 0.91578 0.91768 0.92485 0.91197 0.89881 0.87908 0.76420 0.87095 0.88369 0.88559 0.87875 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 10.70 59.85 0.64 1.58 16 2 N -0.74 -8.42 5.50 -67.08 -0.37 -8.78 16 3 C 0.51 8.09 6.48 -10.99 -0.07 8.02 16 4 O -0.49 -10.16 15.53 5.55 0.09 -10.07 16 5 C -0.09 -1.35 0.64 -155.66 -0.10 -1.45 16 6 C -0.14 -1.65 8.20 37.16 0.30 -1.34 16 7 C -0.14 -1.60 8.20 37.16 0.30 -1.30 16 8 C 0.15 2.86 2.50 -4.04 -0.01 2.85 16 9 N -1.12 -19.78 5.31 -10.61 -0.06 -19.83 16 10 S 2.71 58.45 5.44 -107.50 -0.58 57.87 16 11 O -1.00 -22.08 16.97 -57.17 -0.97 -23.06 16 12 O -0.97 -23.89 14.94 -57.17 -0.85 -24.74 16 13 C -0.78 -18.19 5.95 -38.87 -0.23 -18.42 16 14 C 0.02 0.43 9.54 -39.66 -0.38 0.05 16 15 C -0.27 -5.59 10.05 -39.29 -0.39 -5.99 16 16 C -0.05 -1.01 10.02 -39.66 -0.40 -1.41 16 17 C -0.23 -5.56 7.04 -38.87 -0.27 -5.83 16 18 C 0.16 3.90 5.04 -106.82 -0.54 3.36 16 19 C -0.46 -11.72 5.26 -37.74 -0.20 -11.92 16 20 H 0.13 3.69 4.49 -52.49 -0.24 3.45 16 21 C 0.10 2.44 4.71 -17.34 -0.08 2.36 16 22 N -0.74 -18.67 13.48 55.55 0.75 -17.92 16 23 Si 0.90 20.30 24.08 -169.99 -4.09 16.21 16 24 H -0.27 -5.98 6.74 56.52 0.38 -5.60 16 25 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 26 H -0.24 -5.54 6.71 56.52 0.38 -5.16 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.40 3.18 7.67 -40.82 -0.31 2.87 16 31 H 0.07 0.78 7.23 -51.93 -0.38 0.40 16 32 H 0.05 0.48 7.56 -51.93 -0.39 0.09 16 33 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 36 H 0.07 0.71 6.58 -51.93 -0.34 0.37 16 37 H 0.08 1.76 5.80 -51.93 -0.30 1.45 16 38 H 0.10 2.28 6.03 -51.93 -0.31 1.96 16 39 H 0.40 5.66 6.51 -34.47 -0.22 5.43 16 40 H 0.11 2.23 7.32 -52.49 -0.38 1.84 16 41 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 43 H 0.10 2.42 4.70 -52.48 -0.25 2.18 16 44 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 LS Contribution 352.71 15.07 5.32 5.32 Total: -1.00 -32.53 352.71 -7.86 -40.39 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -5.66 Total: 14.06 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: -1.42 Total: -29.44 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.32 Total: -46.54 kcal Atomic # 8 Polarization: -56.13 SS G_CDS: -1.74 Total: -57.87 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.09 Total: 16.21 kcal Atomic # 16 Polarization: 58.45 SS G_CDS: -0.58 Total: 57.87 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.53 -7.86 -40.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601373951.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.142 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds