Wall clock time and date at job start Sat Apr 11 2020 05:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34781 * 119.99745 * 2 1 4 4 O 1.21283 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00159 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47029 * 59.99778 * 5 3 2 7 7 C 1.53007 * 109.46946 * 300.00219 * 5 3 2 8 8 C 1.52993 * 109.47241 * 180.02562 * 5 3 2 9 9 N 1.46506 * 109.47203 * 179.97438 * 8 5 3 10 10 S 1.65596 * 120.00156 * 163.89335 * 9 8 5 11 11 O 1.42101 * 106.40597 * 178.86264 * 10 9 8 12 12 O 1.42107 * 106.39981 * 311.78091 * 10 9 8 13 13 C 1.76201 * 107.21969 * 65.31909 * 10 9 8 14 14 C 1.37641 * 120.12605 * 112.07096 * 13 10 9 15 15 C 1.38610 * 120.24333 * 179.97438 * 14 13 10 16 16 C 1.38656 * 120.50521 * 0.02562 * 15 14 13 17 17 C 1.37589 * 120.24884 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12599 * 291.79353 * 13 10 9 19 19 C 1.41392 * 120.24614 * 0.02562 * 18 13 10 20 20 H 1.08000 * 119.99673 * 327.98809 * 19 18 13 21 21 C 1.39949 * 120.00383 * 147.99581 * 19 18 13 22 22 N 1.30822 * 120.00170 * 165.61928 * 21 19 18 23 23 Si 1.86801 * 119.99678 * 345.61694 * 21 19 18 24 24 H 1.48503 * 109.46783 * 94.80097 * 23 21 19 25 25 H 1.48497 * 109.46798 * 214.80029 * 23 21 19 26 26 H 1.48493 * 109.47133 * 334.80308 * 23 21 19 27 27 H 1.09004 * 109.46929 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47276 * 299.99858 * 1 2 3 29 29 H 1.08996 * 109.47620 * 60.00022 * 1 2 3 30 30 H 0.97002 * 120.00379 * 180.02562 * 2 1 3 31 31 H 1.09005 * 109.47251 * 180.02562 * 6 5 3 32 32 H 1.08993 * 109.47747 * 300.00009 * 6 5 3 33 33 H 1.09008 * 109.47093 * 60.00411 * 6 5 3 34 34 H 1.08996 * 109.46848 * 299.99883 * 7 5 3 35 35 H 1.09004 * 109.47035 * 59.99891 * 7 5 3 36 36 H 1.08995 * 109.46915 * 179.97438 * 7 5 3 37 37 H 1.09001 * 109.47280 * 60.00421 * 8 5 3 38 38 H 1.08996 * 109.47426 * 299.99566 * 8 5 3 39 39 H 0.96996 * 119.99657 * 343.61805 * 9 8 5 40 40 H 1.07999 * 119.87615 * 359.97438 * 14 13 10 41 41 H 1.08007 * 119.74693 * 179.97438 * 15 14 13 42 42 H 1.08004 * 119.87348 * 179.97438 * 16 15 14 43 43 H 1.08005 * 120.13004 * 179.97438 * 17 16 15 44 44 H 0.96996 * 120.00147 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1674 -0.0006 6 6 4.1554 0.4464 -1.2501 7 6 4.1564 0.4458 1.2483 8 6 4.1557 2.6098 0.0002 9 7 5.6208 2.6099 0.0002 10 16 6.4487 3.9880 -0.3969 11 8 7.8297 3.6747 -0.2784 12 8 5.8628 4.4767 -1.5957 13 6 6.1008 5.1832 0.8502 14 6 7.0941 5.5934 1.7102 15 6 6.8232 6.5339 2.6917 16 6 5.5516 7.0715 2.8197 17 6 4.5430 6.6753 1.9717 18 6 4.8081 5.7261 0.9669 19 6 3.7812 5.3162 0.0857 20 1 4.0209 5.0345 -0.9290 21 6 2.4541 5.2755 0.5282 22 7 1.4787 5.1742 -0.3376 23 14 2.0757 5.3660 2.3552 24 1 1.7904 6.7737 2.7325 25 1 0.8914 4.5227 2.6577 26 1 3.2444 4.8737 3.1278 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.9501 -0.8400 -0.0004 31 1 5.2454 0.4461 -1.2504 32 1 3.7922 -0.5812 -1.2503 33 1 3.7917 0.9605 -2.1399 34 1 3.7933 0.9594 2.1385 35 1 3.7930 -0.5819 1.2482 36 1 5.2463 0.4455 1.2477 37 1 3.7928 3.1231 0.8907 38 1 3.7921 3.1242 -0.8893 39 1 6.1058 1.8039 0.2368 40 1 8.0882 5.1810 1.6198 41 1 7.6086 6.8498 3.3626 42 1 5.3517 7.8033 3.5884 43 1 3.5531 7.0950 2.0734 44 1 0.5589 5.1464 -0.0310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601373951.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:32 Heat of formation + Delta-G solvation = -119.144955 kcal Electronic energy + Delta-G solvation = -29834.640655 eV Core-core repulsion = 25877.598565 eV Total energy + Delta-G solvation = -3957.042090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12844 -39.57897 -38.16691 -37.61940 -36.68398 -35.68290 -35.45106 -33.57030 -32.38192 -31.77283 -28.21660 -27.74919 -27.43075 -26.65253 -23.75421 -23.13198 -22.86304 -20.51192 -20.27464 -19.42986 -18.98664 -18.18504 -17.47035 -17.15826 -16.95310 -16.63503 -16.26498 -15.96659 -15.83084 -15.41756 -15.20777 -15.01451 -14.86877 -14.53976 -14.39520 -13.95820 -13.82815 -13.49091 -13.16774 -13.11127 -13.08673 -13.04465 -13.01644 -12.94922 -12.89600 -12.76694 -12.65897 -12.36882 -12.16859 -12.02411 -11.69700 -11.53049 -11.20131 -10.97013 -10.57909 -10.21835 -9.99313 -9.91243 -9.51320 -8.88208 -6.60053 -0.17760 0.39630 0.85396 1.20862 1.35503 1.42368 1.78826 2.06282 2.20631 2.50367 2.62242 2.95275 3.40493 3.62130 3.72854 3.92161 3.97419 4.22221 4.24984 4.32575 4.50294 4.63417 4.64696 4.65433 4.73402 4.75048 4.83251 4.86449 4.95697 4.98064 5.01459 5.05158 5.23988 5.27761 5.37832 5.41273 5.43888 5.56573 5.59371 5.76219 5.87952 6.14869 6.34584 6.39398 6.60025 6.66681 6.78057 7.43285 8.13719 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011751 B = 0.006433 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.226504 B = 4351.673939 C = 5775.879542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.721 5.721 3 C 0.505 3.495 4 O -0.552 6.552 5 C -0.092 4.092 6 C -0.137 4.137 7 C -0.139 4.139 8 C 0.160 3.840 9 N -1.102 6.102 10 S 2.723 3.277 11 O -1.002 7.002 12 O -1.004 7.004 13 C -0.790 4.790 14 C 0.006 3.994 15 C -0.256 4.256 16 C -0.043 4.043 17 C -0.261 4.261 18 C 0.142 3.858 19 C -0.477 4.477 20 H 0.103 0.897 21 C 0.081 3.919 22 N -0.773 5.773 23 Si 0.940 3.060 24 H -0.262 1.262 25 H -0.287 1.287 26 H -0.246 1.246 27 H 0.115 0.885 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.417 0.583 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.041 0.959 34 H 0.048 0.952 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.421 0.579 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.101 0.899 44 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.154 -14.838 5.161 15.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.375 5.375 3 C 0.290 3.710 4 O -0.429 6.429 5 C -0.096 4.096 6 C -0.194 4.194 7 C -0.196 4.196 8 C 0.034 3.966 9 N -0.864 5.864 10 S 2.819 3.181 11 O -0.993 6.993 12 O -0.994 6.994 13 C -0.884 4.884 14 C -0.014 4.014 15 C -0.275 4.275 16 C -0.062 4.062 17 C -0.280 4.280 18 C 0.138 3.862 19 C -0.504 4.504 20 H 0.121 0.879 21 C -0.144 4.144 22 N -0.393 5.393 23 Si 0.765 3.235 24 H -0.188 1.188 25 H -0.214 1.214 26 H -0.170 1.170 27 H 0.133 0.867 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.254 0.746 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.259 0.741 40 H 0.150 0.850 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.119 0.881 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.158 -13.884 4.187 14.502 hybrid contribution -0.687 0.267 1.037 1.273 sum -0.845 -13.616 5.224 14.608 Atomic orbital electron populations 1.21571 0.79292 1.03912 1.00758 1.45613 1.07815 1.08269 1.75837 1.20844 0.90290 0.84124 0.75698 1.90879 1.70734 1.32562 1.48688 1.21039 0.91285 0.96734 1.00592 1.21882 1.02858 1.00654 0.94057 1.21921 1.02954 1.00841 0.93909 1.21198 0.77453 0.95402 1.02550 1.55153 1.15297 1.27956 1.87954 1.00234 0.71033 0.73092 0.73745 1.93433 1.32824 1.84908 1.88135 1.93469 1.78527 1.80708 1.46663 1.30106 1.03578 1.27704 1.27002 1.20727 0.96681 0.93011 0.90940 1.20957 0.97516 1.05161 1.03909 1.21252 0.93088 0.96144 0.95679 1.21327 0.99381 1.04186 1.03148 1.17262 0.90712 0.88142 0.90127 1.20288 0.91194 1.38455 1.00474 0.87894 1.26375 0.95053 0.90612 1.02319 1.69560 1.01771 1.29539 1.38440 0.85882 0.78507 0.78751 0.80317 1.18760 1.21392 1.16964 0.86659 0.94053 0.94101 0.74628 0.90067 0.88561 0.94008 0.93324 0.88520 0.89703 0.92504 0.92106 0.74098 0.85045 0.84481 0.84836 0.88099 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.73 10.70 127.77 1.37 3.10 16 2 N -0.72 -15.10 5.50 -484.51 -2.66 -17.77 16 3 C 0.51 16.04 6.48 87.65 0.57 16.61 16 4 O -0.55 -24.02 15.53 -3.04 -0.05 -24.07 16 5 C -0.09 -2.58 0.64 -52.93 -0.03 -2.61 16 6 C -0.14 -3.05 8.20 71.98 0.59 -2.46 16 7 C -0.14 -2.80 8.20 71.98 0.59 -2.21 16 8 C 0.16 6.30 2.50 86.38 0.22 6.52 16 9 N -1.10 -39.02 5.31 -187.49 -1.00 -40.02 16 10 S 2.72 119.22 5.44 -56.49 -0.31 118.91 16 11 O -1.00 -43.30 16.97 -128.00 -2.17 -45.47 16 12 O -1.00 -52.04 14.94 -128.00 -1.91 -53.95 16 13 C -0.79 -37.12 5.95 22.73 0.14 -36.98 16 14 C 0.01 0.25 9.54 22.22 0.21 0.47 16 15 C -0.26 -9.86 10.05 22.46 0.23 -9.64 16 16 C -0.04 -1.75 10.02 22.22 0.22 -1.53 16 17 C -0.26 -12.36 7.04 22.73 0.16 -12.20 16 18 C 0.14 7.26 5.04 -21.29 -0.11 7.15 16 19 C -0.48 -25.89 5.26 23.46 0.12 -25.76 16 20 H 0.10 6.16 4.49 -2.91 -0.01 6.15 16 21 C 0.08 4.22 4.71 85.26 0.40 4.62 16 22 N -0.77 -41.71 13.48 21.83 0.29 -41.42 16 23 Si 0.94 42.94 24.08 68.60 1.65 44.60 16 24 H -0.26 -11.35 6.74 99.48 0.67 -10.68 16 25 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 26 H -0.25 -11.23 6.71 99.48 0.67 -10.56 16 27 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.42 5.15 7.67 -92.71 -0.71 4.43 16 31 H 0.08 1.61 7.23 -2.38 -0.02 1.60 16 32 H 0.10 1.32 7.56 -2.39 -0.02 1.31 16 33 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.19 7.56 -2.38 -0.02 1.17 16 36 H 0.08 1.45 6.58 -2.39 -0.02 1.43 16 37 H 0.06 2.54 5.80 -2.39 -0.01 2.52 16 38 H 0.06 2.93 6.03 -2.39 -0.01 2.91 16 39 H 0.42 11.25 6.51 -96.75 -0.63 10.62 16 40 H 0.13 4.91 7.32 -2.91 -0.02 4.89 16 41 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 42 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 43 H 0.10 4.74 4.70 -2.91 -0.01 4.73 16 44 H 0.29 14.80 8.30 -92.71 -0.77 14.04 16 Total: -1.00 -76.12 352.71 -1.84 -77.95 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -0.35 Total: 36.15 kcal Atomic # 6 Polarization: -59.59 SS G_CDS: 4.67 Total: -54.92 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -3.37 Total: -99.20 kcal Atomic # 8 Polarization: -119.36 SS G_CDS: -4.13 Total: -123.49 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.65 Total: 44.60 kcal Atomic # 16 Polarization: 119.22 SS G_CDS: -0.31 Total: 118.91 kcal Total: -76.12 -1.84 -77.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601373951.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.194 kcal (2) G-P(sol) polarization free energy of solvation -76.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds