Wall clock time and date at job start Sat Apr 11 2020 05:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47240 * 2 1 4 4 H 1.09004 * 109.47157 * 304.99713 * 3 2 1 5 5 C 1.50704 * 109.47464 * 185.00119 * 3 2 1 6 6 H 1.07994 * 119.99580 * 240.00455 * 5 3 2 7 7 C 1.37871 * 119.99609 * 59.99561 * 5 3 2 8 8 N 1.31509 * 120.00538 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99575 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47177 * 90.00183 * 9 7 5 11 11 H 1.48499 * 109.47475 * 210.00154 * 9 7 5 12 12 H 1.48505 * 109.47324 * 330.00199 * 9 7 5 13 13 N 1.46499 * 109.47313 * 64.99671 * 3 2 1 14 14 C 1.34783 * 119.99943 * 275.00344 * 13 3 2 15 15 O 1.21275 * 119.99914 * 359.97438 * 14 13 3 16 16 C 1.50700 * 119.99600 * 179.97438 * 14 13 3 17 17 N 1.46498 * 109.46769 * 179.97438 * 16 14 13 18 18 C 1.39678 * 119.99747 * 179.72194 * 17 16 14 19 19 C 1.38911 * 120.07451 * 0.02562 * 18 17 16 20 20 C 1.38107 * 119.92234 * 179.76398 * 19 18 17 21 21 C 1.38283 * 120.07576 * 0.50801 * 20 19 18 22 22 S 1.76204 * 119.92587 * 179.72203 * 21 20 19 23 23 C 1.81401 * 104.44884 * 270.02256 * 22 21 20 24 24 O 1.42096 * 104.27498 * 26.09220 * 22 21 20 25 25 O 1.42102 * 104.27453 * 153.95347 * 22 21 20 26 26 C 1.38287 * 120.15056 * 359.74867 * 21 20 19 27 27 C 1.38108 * 120.07092 * 359.97438 * 26 21 20 28 28 H 1.08995 * 109.47004 * 179.97438 * 1 2 3 29 29 H 1.08988 * 109.47256 * 300.00151 * 1 2 3 30 30 H 1.09008 * 109.46662 * 60.00124 * 1 2 3 31 31 H 1.09002 * 109.47159 * 239.99901 * 2 1 3 32 32 H 1.08996 * 109.47255 * 120.00193 * 2 1 3 33 33 H 0.97006 * 120.00056 * 179.97438 * 8 7 5 34 34 H 0.96995 * 119.99612 * 94.99585 * 13 3 2 35 35 H 1.09004 * 109.47210 * 60.00194 * 16 14 13 36 36 H 1.08994 * 109.47121 * 300.00164 * 16 14 13 37 37 H 0.97001 * 120.00384 * 0.02562 * 17 16 14 38 38 H 1.08001 * 120.04004 * 0.02562 * 19 18 17 39 39 H 1.07999 * 119.96358 * 180.25738 * 20 19 18 40 40 H 1.09007 * 109.46926 * 59.99968 * 23 22 21 41 41 H 1.08992 * 109.47305 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.47433 * 300.00240 * 23 22 21 43 43 H 1.07998 * 119.96670 * 180.02562 * 26 21 20 44 44 H 1.08005 * 120.03305 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8419 5 6 3.5420 1.4444 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8801 -1.3811 10 1 6.5539 -0.3519 -0.7598 11 1 6.3836 0.9215 -2.8165 12 1 6.5576 2.0721 -0.6889 13 7 1.6525 2.0975 1.2517 14 6 0.4351 2.6645 1.3668 15 8 -0.3392 2.6327 0.4340 16 6 0.0362 3.3378 2.6547 17 7 -1.3222 3.8710 2.5265 18 6 -1.9150 4.5377 3.6013 19 6 -1.2177 4.6965 4.7921 20 6 -1.8050 5.3605 5.8512 21 6 -3.0896 5.8578 5.7306 22 16 -3.8379 6.6979 7.0867 23 6 -4.6748 5.3894 8.0237 24 8 -2.7408 7.2167 7.8259 25 8 -4.7883 7.5636 6.4813 26 6 -3.7887 5.6969 4.5483 27 6 -3.2051 5.0389 3.4834 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8293 -0.0604 -2.9502 34 1 2.2719 2.1231 1.9977 35 1 0.7276 4.1531 2.8677 36 1 0.0673 2.6131 3.4683 37 1 -1.8117 3.7573 1.6968 38 1 -0.2158 4.3048 4.8883 39 1 -1.2619 5.4879 6.7759 40 1 -3.9416 4.6540 8.3550 41 1 -5.1705 5.8242 8.8915 42 1 -5.4148 4.9035 7.3877 43 1 -4.7917 6.0869 4.4573 44 1 -3.7518 4.9132 2.5605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602135014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:08 Heat of formation + Delta-G solvation = -81.396428 kcal Electronic energy + Delta-G solvation = -26478.756387 eV Core-core repulsion = 22523.351196 eV Total energy + Delta-G solvation = -3955.405191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.94974 -39.08626 -37.27510 -36.14778 -35.85642 -34.93567 -32.59408 -31.40729 -31.14296 -30.25397 -29.71970 -27.62961 -26.26139 -23.32946 -23.06082 -22.21587 -20.48359 -19.56337 -19.21533 -18.33966 -17.75111 -16.82768 -16.40996 -16.37789 -15.79838 -15.65809 -15.47395 -15.15056 -14.69772 -14.41369 -14.02874 -13.78506 -13.75003 -13.65533 -13.51708 -13.17175 -12.97284 -12.84226 -12.75864 -12.26983 -12.16792 -12.03553 -11.62014 -11.37325 -11.36026 -11.31601 -11.10230 -10.92839 -10.84309 -10.59722 -10.43889 -10.32099 -9.78188 -9.33432 -9.25359 -9.18042 -8.62605 -8.06152 -7.88379 -6.23211 -4.33475 -0.11526 0.90947 1.19192 2.72321 3.02399 3.05867 3.17332 3.25107 3.26739 3.33066 3.78164 3.90101 3.91173 4.26892 4.44022 4.50179 4.68292 4.70285 5.05213 5.08458 5.08977 5.23088 5.26095 5.28160 5.28227 5.43574 5.70798 5.84424 5.98718 6.02949 6.25483 6.30409 6.50076 6.51364 6.88380 6.95635 7.05444 7.17653 7.24590 7.46051 7.49125 7.58565 7.75310 8.04504 8.42717 8.61360 8.87013 9.34004 10.82027 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027615 B = 0.001884 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.688057 B =14859.005115 C =15375.964644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.700 5.700 14 C 0.496 3.504 15 O -0.545 6.545 16 C 0.093 3.907 17 N -0.716 5.716 18 C 0.275 3.725 19 C -0.223 4.223 20 C 0.025 3.975 21 C -0.726 4.726 22 S 2.508 3.492 23 C -0.653 4.653 24 O -0.946 6.946 25 O -0.946 6.946 26 C 0.024 3.976 27 C -0.216 4.216 28 H 0.024 0.976 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.101 0.899 32 H 0.032 0.968 33 H 0.266 0.734 34 H 0.391 0.609 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.416 0.584 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.138 0.862 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.394 6.420 18.399 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.348 5.348 14 C 0.279 3.721 15 O -0.424 6.424 16 C -0.035 4.035 17 N -0.344 5.344 18 C 0.166 3.834 19 C -0.247 4.247 20 C 0.005 3.995 21 C -0.817 4.817 22 S 2.689 3.311 23 C -0.803 4.803 24 O -0.943 6.943 25 O -0.943 6.943 26 C 0.004 3.996 27 C -0.240 4.240 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.224 0.776 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.256 0.744 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.647 7.051 17.660 23.406 hybrid contribution 1.252 -1.089 -0.415 1.710 sum -12.396 5.962 17.244 22.058 Atomic orbital electron populations 1.21834 0.98368 0.98174 1.01039 1.21949 0.92564 0.99712 1.02484 1.18850 0.94427 0.89187 0.80609 0.93196 1.21199 0.90510 1.39393 1.06467 0.91988 1.24888 0.98768 0.94688 0.95313 1.69883 1.35259 1.37364 1.09320 0.86433 0.84626 0.78495 0.77470 1.20486 1.21024 1.19826 1.46465 1.14129 1.55280 1.18910 1.20146 0.83432 0.79841 0.88652 1.90677 1.51412 1.60149 1.40212 1.21291 0.84854 0.99306 0.98027 1.44771 1.15481 1.58987 1.15141 1.18152 0.91285 0.86783 0.87175 1.20780 1.01810 1.08719 0.93349 1.20612 0.91729 0.88955 0.98192 1.29941 1.07518 1.27096 1.17162 1.04731 0.75048 0.76147 0.75216 1.30265 1.14843 1.20023 1.15129 1.93564 1.51671 1.76528 1.72537 1.93563 1.63608 1.61441 1.75718 1.20580 0.98407 0.90258 0.90404 1.20706 0.95085 1.07162 1.01027 0.95727 0.94511 0.93139 0.88128 0.94925 0.92443 0.77632 0.89115 0.89231 0.74446 0.85097 0.84417 0.85128 0.85473 0.85137 0.84412 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.52 37.16 0.32 -2.53 16 2 C -0.13 -2.93 5.45 -26.73 -0.15 -3.07 16 3 C 0.27 6.33 2.24 -69.08 -0.15 6.17 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.40 8.73 -34.44 -0.30 -13.70 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.76 11.29 55.43 0.63 -23.13 16 9 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 N -0.70 -12.79 5.02 -54.93 -0.28 -13.07 16 14 C 0.50 8.39 6.47 -10.98 -0.07 8.31 16 15 O -0.55 -11.09 12.81 5.56 0.07 -11.02 16 16 C 0.09 1.12 5.39 -5.19 -0.03 1.09 16 17 N -0.72 -8.68 5.70 -59.81 -0.34 -9.02 16 18 C 0.28 3.09 6.65 -83.79 -0.56 2.53 16 19 C -0.22 -2.26 9.31 -39.38 -0.37 -2.63 16 20 C 0.03 0.24 9.46 -39.61 -0.37 -0.14 16 21 C -0.73 -6.73 5.66 -39.55 -0.22 -6.95 16 22 S 2.51 19.91 5.80 -107.50 -0.62 19.29 16 23 C -0.65 -2.49 10.80 101.05 1.09 -1.40 16 24 O -0.95 -10.52 17.12 -57.54 -0.98 -11.51 16 25 O -0.95 -10.54 17.12 -57.54 -0.98 -11.52 16 26 C 0.02 0.23 9.46 -39.61 -0.37 -0.15 16 27 C -0.22 -2.25 9.90 -39.38 -0.39 -2.64 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.73 5.65 -51.94 -0.29 0.43 16 30 H 0.05 1.13 7.85 -51.92 -0.41 0.72 16 31 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.39 6.02 8.54 -40.82 -0.35 5.68 16 35 H 0.09 0.95 7.96 -51.93 -0.41 0.53 16 36 H 0.09 0.89 7.94 -51.93 -0.41 0.48 16 37 H 0.42 5.45 7.45 -40.82 -0.30 5.15 16 38 H 0.13 1.11 6.73 -52.49 -0.35 0.76 16 39 H 0.14 1.04 7.56 -52.49 -0.40 0.64 16 40 H 0.13 0.34 8.14 -51.92 -0.42 -0.09 16 41 H 0.13 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.13 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.14 1.05 7.56 -52.49 -0.40 0.66 16 44 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -33.79 374.63 -9.67 -43.46 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -6.11 Total: 9.51 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.67 Total: -13.48 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.01 Total: -45.22 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.90 Total: -34.05 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 19.91 SS G_CDS: -0.62 Total: 19.29 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.79 -9.67 -43.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602135014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.935 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds