Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46988 * 2 1 4 4 N 1.46497 * 109.47407 * 239.99814 * 2 1 3 5 5 S 1.65602 * 120.00111 * 68.09227 * 4 2 1 6 6 O 1.42094 * 104.27476 * 183.26737 * 5 4 2 7 7 O 1.42105 * 104.27569 * 311.11982 * 5 4 2 8 8 C 1.81400 * 104.44663 * 67.19302 * 5 4 2 9 9 C 1.53001 * 109.46810 * 171.24168 * 8 5 4 10 10 C 1.50694 * 109.47382 * 179.97438 * 9 8 5 11 11 H 1.08002 * 119.99581 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00386 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99702 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00157 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46891 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46813 * 119.99919 * 14 12 10 17 17 H 1.48499 * 109.47480 * 240.00399 * 14 12 10 18 18 C 1.50707 * 109.46969 * 119.99265 * 2 1 3 19 19 O 1.21288 * 120.00023 * 265.00181 * 18 2 1 20 20 N 1.34778 * 119.99469 * 85.00570 * 18 2 1 21 21 C 1.39926 * 119.99660 * 183.77311 * 20 18 2 22 22 C 1.38874 * 120.07073 * 144.05611 * 21 20 18 23 23 C 1.38108 * 119.92914 * 179.97438 * 22 21 20 24 24 C 1.38280 * 120.07215 * 359.97438 * 23 22 21 25 25 C 1.38284 * 120.14119 * 0.03953 * 24 23 22 26 26 C 1.38112 * 120.06897 * 359.96412 * 25 24 23 27 27 H 1.08998 * 109.47321 * 290.98969 * 1 2 3 28 28 H 1.09001 * 109.47085 * 50.99073 * 1 2 3 29 29 H 1.08996 * 109.47232 * 170.99046 * 1 2 3 30 30 H 1.09000 * 109.47021 * 194.70002 * 3 2 1 31 31 H 1.09004 * 109.46908 * 314.69317 * 3 2 1 32 32 H 1.08996 * 109.47758 * 74.69037 * 3 2 1 33 33 H 0.97004 * 119.99379 * 248.09993 * 4 2 1 34 34 H 1.08998 * 109.47059 * 291.23985 * 8 5 4 35 35 H 1.08994 * 109.47201 * 51.24294 * 8 5 4 36 36 H 1.09003 * 109.47394 * 300.00440 * 9 8 5 37 37 H 1.09005 * 109.47279 * 59.99569 * 9 8 5 38 38 H 0.97000 * 119.99596 * 179.97438 * 13 12 10 39 39 H 0.96992 * 120.00270 * 3.76857 * 20 18 2 40 40 H 1.08001 * 120.03408 * 359.70210 * 22 21 20 41 41 H 1.08001 * 119.96336 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.93100 * 180.02562 * 24 23 22 43 43 H 1.07997 * 119.96482 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.03541 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 16 1.7899 -0.0179 -2.6920 6 8 2.3117 -0.9839 -3.5940 7 8 0.4133 0.3342 -2.7113 8 6 2.8276 1.4700 -2.6823 9 6 2.8746 2.0680 -4.0898 10 6 3.7361 3.3045 -4.0818 11 1 4.2036 3.6308 -3.1645 12 6 3.9282 4.0185 -5.2455 13 7 3.3592 3.6207 -6.3625 14 14 4.9955 5.5515 -5.2353 15 1 5.5154 5.7835 -3.8637 16 1 6.1338 5.3683 -6.1712 17 1 4.1863 6.7209 -5.6629 18 6 2.0323 -0.7103 1.2306 19 8 2.3207 -0.0746 2.2225 20 7 2.1611 -2.0519 1.2288 21 6 2.5517 -2.7187 2.3953 22 6 2.0200 -3.9662 2.6950 23 6 2.4080 -4.6220 3.8468 24 6 3.3252 -4.0380 4.7011 25 6 3.8563 -2.7959 4.4058 26 6 3.4724 -2.1348 3.2555 27 1 -0.3634 0.3681 0.9594 28 1 -0.3633 0.6469 -0.7985 29 1 -0.3633 -1.0149 -0.1609 30 1 3.0982 1.4537 -0.2608 31 1 1.4796 2.0260 -0.7306 32 1 1.9053 1.8756 0.9911 33 1 2.4755 -1.5420 -1.1118 34 1 2.4083 2.2008 -1.9908 35 1 3.8367 1.2071 -2.3653 36 1 3.2938 1.3372 -4.7814 37 1 1.8654 2.3309 -4.4069 38 1 3.4941 4.1233 -7.1811 39 1 1.9829 -2.5552 0.4191 40 1 1.3006 -4.4210 2.0302 41 1 1.9946 -5.5919 4.0806 42 1 3.6274 -4.5531 5.6011 43 1 4.5722 -2.3422 5.0752 44 1 3.8872 -1.1645 3.0256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609542314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = -74.821130 kcal Electronic energy + Delta-G solvation = -27714.598532 eV Core-core repulsion = 23759.478467 eV Total energy + Delta-G solvation = -3955.120064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15227 -39.06299 -37.06428 -36.32352 -35.53966 -35.18599 -33.99242 -31.41692 -31.21049 -30.56767 -29.89823 -27.61001 -25.56227 -24.61643 -23.11291 -22.18994 -21.49279 -20.25020 -19.10821 -18.72470 -17.79871 -17.28698 -16.63677 -16.33288 -15.80599 -15.73410 -15.39034 -14.97027 -14.78923 -14.56097 -14.27024 -14.21889 -13.67031 -13.66563 -13.52074 -13.07171 -12.76330 -12.65699 -12.47015 -12.18702 -12.01458 -11.79379 -11.70418 -11.68207 -11.58369 -11.55573 -11.27705 -11.08515 -10.87621 -10.66898 -10.43251 -10.32174 -10.07994 -9.89028 -9.63460 -9.21896 -9.14574 -8.53130 -8.49986 -6.15386 -4.20843 0.63920 0.94806 1.11300 2.15564 2.56087 2.95198 3.23782 3.31487 3.34688 3.51901 4.06493 4.18352 4.35327 4.51252 4.54488 4.64645 4.66280 4.73207 4.86468 4.94600 5.10818 5.20096 5.23547 5.26707 5.38916 5.50208 5.59976 5.67734 5.71550 5.75456 5.80512 5.97310 6.02009 6.07626 6.19055 6.24032 6.26419 6.46743 6.66419 6.72455 6.99238 7.25696 7.32343 7.69019 7.78082 8.14194 8.82996 9.44339 10.95617 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.002659 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.922787 B =10526.803368 C =11165.728331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.173 3.827 3 C -0.190 4.190 4 N -1.124 6.124 5 S 2.591 3.409 6 O -0.962 6.962 7 O -0.960 6.960 8 C -0.601 4.601 9 C 0.028 3.972 10 C -0.519 4.519 11 H 0.062 0.938 12 C 0.058 3.942 13 N -0.890 5.890 14 Si 0.899 3.101 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.528 3.472 19 O -0.508 6.508 20 N -0.673 5.673 21 C 0.143 3.857 22 C -0.144 4.144 23 C -0.103 4.103 24 C -0.136 4.136 25 C -0.103 4.103 26 C -0.119 4.119 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.409 0.591 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.035 0.965 37 H 0.031 0.969 38 H 0.264 0.736 39 H 0.412 0.588 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.788 -14.520 19.901 24.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.081 3.919 3 C -0.248 4.248 4 N -0.882 5.882 5 S 2.689 3.311 6 O -0.952 6.952 7 O -0.950 6.950 8 C -0.734 4.734 9 C -0.011 4.011 10 C -0.559 4.559 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.528 5.528 14 Si 0.726 3.274 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.314 3.686 19 O -0.381 6.381 20 N -0.319 5.319 21 C 0.050 3.950 22 C -0.164 4.164 23 C -0.122 4.122 24 C -0.154 4.154 25 C -0.121 4.121 26 C -0.139 4.139 27 H 0.090 0.910 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.243 0.757 34 H 0.152 0.848 35 H 0.140 0.860 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.249 0.751 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.319 -14.187 19.717 24.517 hybrid contribution 1.143 0.472 -0.137 1.244 sum -2.176 -13.715 19.580 24.004 Atomic orbital electron populations 1.22572 0.90895 1.04829 1.04877 1.20305 0.96343 0.93144 0.82140 1.22887 1.03205 0.92619 1.06053 1.56208 1.74875 1.33985 1.23104 1.05736 0.76318 0.77333 0.71737 1.93567 1.81629 1.59023 1.61013 1.93522 1.31374 1.85122 1.84968 1.30972 1.14074 1.17185 1.11211 1.18976 0.99225 0.97323 0.85535 1.21027 1.30312 1.09121 0.95396 0.91933 1.25067 0.95948 0.98021 0.95470 1.69962 1.43400 1.39697 0.99753 0.86424 0.80134 0.82584 0.78211 1.19611 1.20829 1.20789 1.20681 0.76515 0.81634 0.89760 1.90724 1.47318 1.65553 1.34457 1.43570 1.67979 1.07607 1.12729 1.17795 0.95675 0.92984 0.88567 1.20954 1.01330 0.95331 0.98824 1.20946 0.97564 0.99756 0.93885 1.21167 0.98354 0.95917 1.00003 1.21094 0.99548 0.94807 0.96669 1.21306 0.96259 1.01228 0.95107 0.91044 0.87355 0.91391 0.89885 0.89469 0.88501 0.75720 0.84835 0.85952 0.94693 0.95041 0.92579 0.75073 0.85610 0.85665 0.85988 0.85665 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 8.04 37.16 0.30 -1.62 16 2 C 0.17 1.96 1.06 -132.97 -0.14 1.82 16 3 C -0.19 -2.22 6.56 37.16 0.24 -1.97 16 4 N -1.12 -13.01 5.32 -0.40 0.00 -13.01 16 5 S 2.59 42.14 5.17 -107.50 -0.56 41.58 16 6 O -0.96 -18.76 18.08 -57.54 -1.04 -19.80 16 7 O -0.96 -17.28 15.11 -57.54 -0.87 -18.15 16 8 C -0.60 -10.73 4.32 37.16 0.16 -10.57 16 9 C 0.03 0.70 4.98 -27.89 -0.14 0.56 16 10 C -0.52 -13.92 9.11 -34.44 -0.31 -14.23 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 13 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 14 Si 0.90 20.91 29.54 -169.99 -5.02 15.88 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 C 0.53 6.05 6.49 -10.98 -0.07 5.98 16 19 O -0.51 -7.02 13.30 5.55 0.07 -6.95 16 20 N -0.67 -6.35 5.11 -9.86 -0.05 -6.40 16 21 C 0.14 1.44 6.28 -83.69 -0.53 0.92 16 22 C -0.14 -1.19 9.97 -39.39 -0.39 -1.59 16 23 C -0.10 -0.77 10.04 -39.61 -0.40 -1.17 16 24 C -0.14 -1.04 10.04 -39.55 -0.40 -1.44 16 25 C -0.10 -0.91 10.04 -39.61 -0.40 -1.31 16 26 C -0.12 -1.28 8.69 -39.39 -0.34 -1.62 16 27 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 28 H 0.11 1.37 5.87 -51.93 -0.30 1.07 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.95 6.91 -51.93 -0.36 0.59 16 31 H 0.09 1.02 5.82 -51.93 -0.30 0.72 16 32 H 0.10 1.08 7.30 -51.93 -0.38 0.70 16 33 H 0.41 3.77 7.07 -34.48 -0.24 3.53 16 34 H 0.13 2.13 4.77 -51.93 -0.25 1.88 16 35 H 0.12 1.96 8.01 -51.93 -0.42 1.54 16 36 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.41 2.93 7.31 -40.82 -0.30 2.63 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.14 1.65 6.32 -52.48 -0.33 1.32 16 LS Contribution 367.53 15.07 5.54 5.54 Total: -1.00 -34.98 367.53 -9.51 -44.48 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.80 Total: 6.82 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: -2.51 Total: -24.74 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.68 Total: -44.67 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -1.84 Total: -44.89 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 42.14 SS G_CDS: -0.56 Total: 41.58 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.98 -9.51 -44.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609542314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.339 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds