Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46988 * 2 1 4 4 N 1.46497 * 109.47407 * 239.99814 * 2 1 3 5 5 S 1.65602 * 120.00111 * 68.09227 * 4 2 1 6 6 O 1.42094 * 104.27476 * 183.26737 * 5 4 2 7 7 O 1.42105 * 104.27569 * 311.11982 * 5 4 2 8 8 C 1.81400 * 104.44663 * 67.19302 * 5 4 2 9 9 C 1.53001 * 109.46810 * 171.24168 * 8 5 4 10 10 C 1.50694 * 109.47382 * 179.97438 * 9 8 5 11 11 H 1.08002 * 119.99581 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00386 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99702 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00157 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46891 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46813 * 119.99919 * 14 12 10 17 17 H 1.48499 * 109.47480 * 240.00399 * 14 12 10 18 18 C 1.50707 * 109.46969 * 119.99265 * 2 1 3 19 19 O 1.21288 * 120.00023 * 265.00181 * 18 2 1 20 20 N 1.34778 * 119.99469 * 85.00570 * 18 2 1 21 21 C 1.39926 * 119.99660 * 183.77311 * 20 18 2 22 22 C 1.38874 * 120.07073 * 144.05611 * 21 20 18 23 23 C 1.38108 * 119.92914 * 179.97438 * 22 21 20 24 24 C 1.38280 * 120.07215 * 359.97438 * 23 22 21 25 25 C 1.38284 * 120.14119 * 0.03953 * 24 23 22 26 26 C 1.38112 * 120.06897 * 359.96412 * 25 24 23 27 27 H 1.08998 * 109.47321 * 290.98969 * 1 2 3 28 28 H 1.09001 * 109.47085 * 50.99073 * 1 2 3 29 29 H 1.08996 * 109.47232 * 170.99046 * 1 2 3 30 30 H 1.09000 * 109.47021 * 194.70002 * 3 2 1 31 31 H 1.09004 * 109.46908 * 314.69317 * 3 2 1 32 32 H 1.08996 * 109.47758 * 74.69037 * 3 2 1 33 33 H 0.97004 * 119.99379 * 248.09993 * 4 2 1 34 34 H 1.08998 * 109.47059 * 291.23985 * 8 5 4 35 35 H 1.08994 * 109.47201 * 51.24294 * 8 5 4 36 36 H 1.09003 * 109.47394 * 300.00440 * 9 8 5 37 37 H 1.09005 * 109.47279 * 59.99569 * 9 8 5 38 38 H 0.97000 * 119.99596 * 179.97438 * 13 12 10 39 39 H 0.96992 * 120.00270 * 3.76857 * 20 18 2 40 40 H 1.08001 * 120.03408 * 359.70210 * 22 21 20 41 41 H 1.08001 * 119.96336 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.93100 * 180.02562 * 24 23 22 43 43 H 1.07997 * 119.96482 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.03541 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 16 1.7899 -0.0179 -2.6920 6 8 2.3117 -0.9839 -3.5940 7 8 0.4133 0.3342 -2.7113 8 6 2.8276 1.4700 -2.6823 9 6 2.8746 2.0680 -4.0898 10 6 3.7361 3.3045 -4.0818 11 1 4.2036 3.6308 -3.1645 12 6 3.9282 4.0185 -5.2455 13 7 3.3592 3.6207 -6.3625 14 14 4.9955 5.5515 -5.2353 15 1 5.5154 5.7835 -3.8637 16 1 6.1338 5.3683 -6.1712 17 1 4.1863 6.7209 -5.6629 18 6 2.0323 -0.7103 1.2306 19 8 2.3207 -0.0746 2.2225 20 7 2.1611 -2.0519 1.2288 21 6 2.5517 -2.7187 2.3953 22 6 2.0200 -3.9662 2.6950 23 6 2.4080 -4.6220 3.8468 24 6 3.3252 -4.0380 4.7011 25 6 3.8563 -2.7959 4.4058 26 6 3.4724 -2.1348 3.2555 27 1 -0.3634 0.3681 0.9594 28 1 -0.3633 0.6469 -0.7985 29 1 -0.3633 -1.0149 -0.1609 30 1 3.0982 1.4537 -0.2608 31 1 1.4796 2.0260 -0.7306 32 1 1.9053 1.8756 0.9911 33 1 2.4755 -1.5420 -1.1118 34 1 2.4083 2.2008 -1.9908 35 1 3.8367 1.2071 -2.3653 36 1 3.2938 1.3372 -4.7814 37 1 1.8654 2.3309 -4.4069 38 1 3.4941 4.1233 -7.1811 39 1 1.9829 -2.5552 0.4191 40 1 1.3006 -4.4210 2.0302 41 1 1.9946 -5.5919 4.0806 42 1 3.6274 -4.5531 5.6011 43 1 4.5722 -2.3422 5.0752 44 1 3.8872 -1.1645 3.0256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609542314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = -100.313445 kcal Electronic energy + Delta-G solvation = -27715.703961 eV Core-core repulsion = 23759.478467 eV Total energy + Delta-G solvation = -3956.225494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.99977 -39.78787 -38.34067 -37.49963 -36.97272 -36.02548 -35.85011 -33.24511 -31.85506 -31.62688 -30.61021 -28.70020 -27.30436 -25.54577 -23.82777 -23.45477 -22.68868 -21.22583 -20.28344 -19.76468 -18.88577 -18.56311 -18.07770 -17.13228 -17.10543 -16.88451 -16.55738 -16.48963 -15.95777 -15.61677 -15.22680 -15.12435 -14.87880 -14.55090 -14.45350 -14.27943 -13.96008 -13.86869 -13.65532 -13.49998 -13.29815 -13.18133 -12.97541 -12.88677 -12.73294 -12.66699 -12.50836 -12.39971 -12.19895 -12.09932 -11.94123 -11.69056 -11.42411 -11.22640 -10.86979 -10.68498 -10.63138 -9.86305 -9.19817 -8.24813 -6.37552 -0.73295 0.26077 0.47031 1.26175 1.41472 1.41916 1.54836 1.71895 1.81863 2.38603 2.77267 2.87608 3.09161 3.21381 3.27148 3.65582 3.76205 3.84548 4.01933 4.07874 4.10699 4.15767 4.31606 4.52731 4.56449 4.57370 4.60828 4.68173 4.77449 4.81206 4.86313 5.11523 5.16446 5.30281 5.32214 5.33642 5.34342 5.36262 5.54792 5.62923 5.71154 5.77260 6.07853 6.09173 6.23318 6.76582 6.87262 7.32444 8.87472 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018903 B = 0.002659 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.922787 B =10526.803368 C =11165.728331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.175 3.825 3 C -0.198 4.198 4 N -1.104 6.104 5 S 2.623 3.377 6 O -0.993 6.993 7 O -0.975 6.975 8 C -0.605 4.605 9 C 0.022 3.978 10 C -0.534 4.534 11 H 0.075 0.925 12 C -0.003 4.003 13 N -0.933 5.933 14 Si 0.970 3.030 15 H -0.257 1.257 16 H -0.280 1.280 17 H -0.279 1.279 18 C 0.532 3.468 19 O -0.533 6.533 20 N -0.661 5.661 21 C 0.122 3.878 22 C -0.145 4.145 23 C -0.104 4.104 24 C -0.135 4.135 25 C -0.113 4.113 26 C -0.143 4.143 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.423 0.577 34 H 0.154 0.846 35 H 0.142 0.858 36 H 0.007 0.993 37 H 0.008 0.992 38 H 0.266 0.734 39 H 0.423 0.577 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.147 0.853 43 H 0.137 0.863 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 -15.590 22.115 27.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.083 3.917 3 C -0.256 4.256 4 N -0.866 5.866 5 S 2.719 3.281 6 O -0.984 6.984 7 O -0.965 6.965 8 C -0.737 4.737 9 C -0.017 4.017 10 C -0.573 4.573 11 H 0.093 0.907 12 C -0.202 4.202 13 N -0.573 5.573 14 Si 0.794 3.206 15 H -0.181 1.181 16 H -0.206 1.206 17 H -0.204 1.204 18 C 0.318 3.682 19 O -0.408 6.408 20 N -0.308 5.308 21 C 0.028 3.972 22 C -0.165 4.165 23 C -0.122 4.122 24 C -0.154 4.154 25 C -0.131 4.131 26 C -0.163 4.163 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.260 0.740 34 H 0.172 0.828 35 H 0.160 0.840 36 H 0.025 0.975 37 H 0.027 0.973 38 H 0.075 0.925 39 H 0.262 0.738 40 H 0.164 0.836 41 H 0.171 0.829 42 H 0.165 0.835 43 H 0.155 0.845 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.043 -15.282 21.929 26.902 hybrid contribution 1.035 0.692 -0.709 1.432 sum -2.009 -14.590 21.221 25.831 Atomic orbital electron populations 1.22585 0.90415 1.05361 1.05036 1.20349 0.96702 0.93001 0.81622 1.22956 1.03407 0.92846 1.06427 1.55686 1.74862 1.34268 1.21782 1.04542 0.75318 0.76173 0.72035 1.93523 1.82042 1.59770 1.63018 1.93510 1.32073 1.85258 1.85628 1.30967 1.16360 1.18883 1.07487 1.18816 0.97311 0.96609 0.88942 1.21540 1.30181 1.09766 0.95847 0.90689 1.26063 0.97414 1.01533 0.95169 1.70099 1.45234 1.41416 1.00546 0.85325 0.78142 0.78329 0.78824 1.18060 1.20560 1.20427 1.20545 0.76323 0.82180 0.89161 1.90723 1.48628 1.66248 1.35239 1.43449 1.67116 1.06978 1.13256 1.17990 0.96444 0.93926 0.88804 1.21240 1.01299 0.94516 0.99461 1.21349 0.96961 1.00677 0.93219 1.21515 0.97744 0.95333 1.00791 1.21317 0.99977 0.95498 0.96349 1.21306 0.97480 1.00999 0.96485 0.89781 0.88848 0.90177 0.89565 0.89661 0.87892 0.73982 0.82824 0.83974 0.97453 0.97343 0.92475 0.73828 0.83598 0.82924 0.83541 0.84508 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.62 8.04 71.98 0.58 -3.05 16 2 C 0.17 3.74 1.06 2.86 0.00 3.74 16 3 C -0.20 -4.42 6.56 71.98 0.47 -3.95 16 4 N -1.10 -24.08 5.32 -155.18 -0.83 -24.90 16 5 S 2.62 84.43 5.17 -56.49 -0.29 84.14 16 6 O -0.99 -38.75 18.08 -127.65 -2.31 -41.06 16 7 O -0.97 -34.83 15.11 -127.65 -1.93 -36.76 16 8 C -0.61 -21.50 4.32 71.98 0.31 -21.19 16 9 C 0.02 1.11 4.98 29.85 0.15 1.26 16 10 C -0.53 -28.87 9.11 25.60 0.23 -28.64 16 11 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 12 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 13 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 14 Si 0.97 42.93 29.54 68.60 2.03 44.95 16 15 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 16 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 17 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 18 C 0.53 11.58 6.49 87.66 0.57 12.15 16 19 O -0.53 -14.50 13.30 -3.05 -0.04 -14.54 16 20 N -0.66 -11.51 5.11 -303.49 -1.55 -13.06 16 21 C 0.12 2.29 6.28 38.15 0.24 2.53 16 22 C -0.15 -2.05 9.97 22.39 0.22 -1.83 16 23 C -0.10 -1.24 10.04 22.25 0.22 -1.01 16 24 C -0.14 -1.74 10.04 22.29 0.22 -1.51 16 25 C -0.11 -1.87 10.04 22.25 0.22 -1.65 16 26 C -0.14 -3.00 8.69 22.39 0.19 -2.81 16 27 H 0.08 1.53 8.12 -2.39 -0.02 1.51 16 28 H 0.09 2.27 5.87 -2.39 -0.01 2.26 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.09 1.85 6.91 -2.39 -0.02 1.83 16 31 H 0.08 1.92 5.82 -2.38 -0.01 1.91 16 32 H 0.10 2.19 7.30 -2.39 -0.02 2.18 16 33 H 0.42 7.07 7.07 -96.74 -0.68 6.38 16 34 H 0.15 4.79 4.77 -2.39 -0.01 4.78 16 35 H 0.14 4.42 8.01 -2.39 -0.02 4.40 16 36 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 38 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.42 5.18 7.31 -92.71 -0.68 4.50 16 40 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 41 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 42 H 0.15 1.11 8.06 -2.91 -0.02 1.08 16 43 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 44 H 0.12 2.90 6.32 -2.91 -0.02 2.88 16 Total: -1.00 -76.61 367.53 -0.84 -77.46 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: -0.32 Total: 25.09 kcal Atomic # 6 Polarization: -49.78 SS G_CDS: 4.11 Total: -45.67 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -2.09 Total: -93.61 kcal Atomic # 8 Polarization: -88.08 SS G_CDS: -4.28 Total: -92.35 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 84.43 SS G_CDS: -0.29 Total: 84.14 kcal Total: -76.61 -0.84 -77.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609542314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.856 kcal (2) G-P(sol) polarization free energy of solvation -76.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds