Wall clock time and date at job start Sat Apr 11 2020 05:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47032 * 180.02562 * 17 16 14 19 19 C 1.38241 * 120.00114 * 269.72664 * 18 17 16 20 20 C 1.38231 * 119.99976 * 179.76738 * 19 18 17 21 21 C 1.38236 * 119.99985 * 0.51125 * 20 19 18 22 22 S 1.76199 * 120.00194 * 179.72294 * 21 20 19 23 23 N 1.65595 * 107.21904 * 270.01964 * 22 21 20 24 24 O 1.42105 * 106.40177 * 23.56213 * 22 21 20 25 25 O 1.42103 * 106.40192 * 156.47990 * 22 21 20 26 26 C 1.38240 * 120.00004 * 359.73999 * 21 20 19 27 27 C 1.38233 * 119.99897 * 0.02562 * 26 21 20 28 28 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 30 30 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 31 31 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 32 32 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 33 33 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 34 34 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 35 35 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 36 36 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 37 37 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 38 38 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 39 39 H 1.07998 * 119.99585 * 0.02562 * 19 18 17 40 40 H 1.07998 * 120.00320 * 180.23433 * 20 19 18 41 41 H 0.97004 * 120.00179 * 149.99914 * 23 22 21 42 42 H 0.96997 * 119.99970 * 329.99734 * 23 22 21 43 43 H 1.07997 * 120.00194 * 179.97438 * 26 21 20 44 44 H 1.07999 * 120.00354 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 6 -1.7461 4.5560 3.8536 19 6 -2.3696 3.8276 4.8496 20 6 -2.7200 4.4407 6.0379 21 6 -2.4566 5.7846 6.2262 22 16 -2.9099 6.5679 7.7381 23 7 -4.4492 7.1479 7.5474 24 8 -2.9869 5.5392 8.7155 25 8 -2.0665 7.7039 7.8701 26 6 -1.8379 6.5142 5.2283 27 6 -1.4831 5.8999 4.0418 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.9548 0.8552 -0.5318 34 1 2.2902 2.1166 1.9978 35 1 0.0991 2.6017 3.4901 36 1 0.7539 4.1436 2.8885 37 1 -1.3974 4.6138 1.7493 38 1 -2.0528 3.0720 2.3506 39 1 -2.5790 2.7786 4.7008 40 1 -3.2036 3.8709 6.8175 41 1 -5.0411 7.2136 8.3131 42 1 -4.7590 7.4220 6.6700 43 1 -1.6325 7.5642 5.3752 44 1 -1.0001 6.4699 3.2620 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613037790.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:30 Heat of formation + Delta-G solvation = -134.844587 kcal Electronic energy + Delta-G solvation = -26518.701287 eV Core-core repulsion = 22560.978410 eV Total energy + Delta-G solvation = -3957.722877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.97630 -40.26067 -38.26069 -37.16893 -36.94016 -35.15360 -34.45344 -34.04271 -33.17774 -32.07303 -30.97245 -29.10065 -26.10739 -24.22859 -23.90396 -22.80844 -21.79715 -21.13379 -20.53595 -19.76138 -19.32438 -18.33065 -17.96797 -17.47471 -17.23289 -16.96214 -16.49906 -16.17772 -15.87889 -15.62956 -15.28844 -15.02846 -14.79632 -14.52375 -14.40778 -14.35145 -14.11935 -13.81785 -13.39525 -13.25652 -13.21463 -13.13029 -13.10817 -12.86168 -12.68683 -12.47291 -12.39412 -12.27954 -11.87546 -11.83808 -11.78295 -11.39375 -11.30342 -11.10687 -10.71495 -10.49042 -10.18082 -10.06041 -9.76686 -8.79919 -6.45165 -0.61568 -0.26579 0.29044 1.44282 1.49049 1.68136 1.82786 2.14139 2.38657 2.40800 2.57759 2.79219 3.00393 3.43809 3.63468 3.79214 3.91707 3.98722 4.15916 4.25605 4.32910 4.34272 4.41563 4.45505 4.54251 4.63931 4.71499 4.81510 4.88036 5.00247 5.06051 5.10689 5.13366 5.16919 5.23510 5.27267 5.31851 5.50974 5.55571 5.68823 5.70547 5.82130 6.00395 6.35324 6.52760 6.89610 7.29030 7.49609 8.59055 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028667 B = 0.001926 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.490050 B =14534.792739 C =14797.503720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.137 4.137 3 C 0.251 3.749 4 H 0.022 0.978 5 C -0.613 4.613 6 H 0.038 0.962 7 C -0.008 4.008 8 N -0.930 5.930 9 Si 1.072 2.928 10 H -0.284 1.284 11 H -0.243 1.243 12 H -0.274 1.274 13 N -0.707 5.707 14 C 0.500 3.500 15 O -0.581 6.581 16 C -0.126 4.126 17 C -0.066 4.066 18 C -0.022 4.022 19 C -0.142 4.142 20 C -0.023 4.023 21 C -0.685 4.685 22 S 2.728 3.272 23 N -1.232 6.232 24 O -0.996 6.996 25 O -0.996 6.996 26 C -0.027 4.027 27 C -0.144 4.144 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.257 0.743 34 H 0.402 0.598 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.149 0.851 40 H 0.154 0.846 41 H 0.430 0.570 42 H 0.429 0.571 43 H 0.155 0.845 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.736 11.405 16.816 30.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.176 4.176 3 C 0.146 3.854 4 H 0.040 0.960 5 C -0.651 4.651 6 H 0.056 0.944 7 C -0.209 4.209 8 N -0.565 5.565 9 Si 0.895 3.105 10 H -0.210 1.210 11 H -0.168 1.168 12 H -0.199 1.199 13 N -0.356 5.356 14 C 0.287 3.713 15 O -0.462 6.462 16 C -0.166 4.166 17 C -0.104 4.104 18 C -0.022 4.022 19 C -0.161 4.161 20 C -0.042 4.042 21 C -0.773 4.773 22 S 2.817 3.183 23 N -0.912 5.912 24 O -0.985 6.985 25 O -0.986 6.986 26 C -0.046 4.046 27 C -0.163 4.163 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.236 0.764 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.167 0.833 40 H 0.172 0.828 41 H 0.263 0.737 42 H 0.259 0.741 43 H 0.173 0.827 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.495 10.866 15.399 29.347 hybrid contribution 0.643 0.399 1.087 1.324 sum -21.852 11.265 16.486 29.600 Atomic orbital electron populations 1.21757 0.95307 1.00311 1.01559 1.22253 0.95567 0.98400 1.01358 1.18711 0.93195 0.89715 0.83778 0.96025 1.22314 0.91769 1.47919 1.03061 0.94369 1.26844 0.97732 0.92182 1.04102 1.70977 1.08103 1.43409 1.33997 0.83707 0.75140 0.78636 0.73032 1.21022 1.16806 1.19921 1.46158 1.15953 1.56428 1.17035 1.21193 0.81312 0.78210 0.90539 1.90649 1.51520 1.61012 1.43036 1.21630 0.98206 1.02020 0.94714 1.20384 0.95344 1.00823 0.93855 1.20333 0.92845 0.94052 0.95008 1.21475 0.99961 1.01471 0.93189 1.21155 0.93492 0.92351 0.97199 1.30559 1.18383 1.06194 1.22173 1.00482 0.72799 0.72720 0.72273 1.52734 1.33871 1.83822 1.20736 1.93558 1.86706 1.59269 1.58997 1.93581 1.67344 1.52090 1.85546 1.21188 0.91487 1.00588 0.91315 1.21473 1.01478 0.94761 0.98550 0.92692 0.92875 0.94151 0.92573 0.92866 0.93358 0.76379 0.87023 0.87542 0.90239 0.89850 0.83331 0.82808 0.73716 0.74058 0.82745 0.83593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 8.53 71.98 0.61 -4.24 16 2 C -0.14 -5.78 5.28 30.59 0.16 -5.62 16 3 C 0.25 11.46 1.82 44.24 0.08 11.54 16 4 H 0.02 1.09 6.26 -2.39 -0.01 1.08 16 5 C -0.61 -32.82 9.01 25.60 0.23 -32.59 16 6 H 0.04 2.17 7.96 -2.91 -0.02 2.15 16 7 C -0.01 -0.46 5.32 84.66 0.45 -0.01 16 8 N -0.93 -55.99 13.69 21.45 0.29 -55.70 16 9 Si 1.07 49.75 26.27 68.60 1.80 51.56 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.24 -10.23 5.67 99.48 0.56 -9.67 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 N -0.71 -26.13 5.03 -446.11 -2.24 -28.38 16 14 C 0.50 16.27 6.42 87.66 0.56 16.83 16 15 O -0.58 -22.57 13.12 -3.03 -0.04 -22.61 16 16 C -0.13 -2.68 5.68 29.85 0.17 -2.51 16 17 C -0.07 -1.28 4.64 29.85 0.14 -1.14 16 18 C -0.02 -0.36 5.13 -19.87 -0.10 -0.46 16 19 C -0.14 -2.11 9.70 22.27 0.22 -1.90 16 20 C -0.02 -0.33 9.52 22.27 0.21 -0.12 16 21 C -0.68 -9.85 5.97 22.27 0.13 -9.72 16 22 S 2.73 37.91 6.28 -56.49 -0.35 37.55 16 23 N -1.23 -6.42 9.52 37.02 0.35 -6.06 16 24 O -1.00 -20.15 17.28 -128.00 -2.21 -22.36 16 25 O -1.00 -20.73 17.28 -128.00 -2.21 -22.94 16 26 C -0.03 -0.38 9.52 22.27 0.21 -0.17 16 27 C -0.14 -2.20 9.70 22.27 0.22 -1.98 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 1.88 5.63 -2.38 -0.01 1.87 16 30 H 0.04 1.56 7.88 -2.39 -0.02 1.54 16 31 H 0.06 2.49 4.74 -2.38 -0.01 2.48 16 32 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.26 15.53 8.73 -92.71 -0.81 14.72 16 34 H 0.40 13.30 8.53 -92.71 -0.79 12.51 16 35 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.08 1.66 8.04 -2.39 -0.02 1.64 16 38 H 0.08 1.67 8.04 -2.39 -0.02 1.65 16 39 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 40 H 0.15 1.75 7.62 -2.91 -0.02 1.73 16 41 H 0.43 0.88 8.96 -96.74 -0.87 0.01 16 42 H 0.43 0.30 8.96 -96.75 -0.87 -0.57 16 43 H 0.15 1.75 7.62 -2.91 -0.02 1.73 16 44 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -77.93 372.26 -2.96 -80.89 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -1.65 Total: 20.13 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: 3.29 Total: -32.08 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -1.60 Total: -90.14 kcal Atomic # 8 Polarization: -63.45 SS G_CDS: -4.46 Total: -67.92 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 1.80 Total: 51.56 kcal Atomic # 16 Polarization: 37.91 SS G_CDS: -0.35 Total: 37.55 kcal Total: -77.93 -2.96 -80.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037790.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.951 kcal (2) G-P(sol) polarization free energy of solvation -77.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds