Wall clock time and date at job start Sat Apr 11 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31515 * 119.99867 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00050 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47175 * 60.00893 * 9 7 5 11 11 H 1.48504 * 109.47307 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47672 * 300.00505 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 C 1.50697 * 109.47491 * 179.97438 * 17 16 14 19 19 C 1.38237 * 119.99934 * 269.72981 * 18 17 16 20 20 C 1.38235 * 119.99947 * 179.76211 * 19 18 17 21 21 C 1.38233 * 120.00063 * 0.50577 * 20 19 18 22 22 S 1.76194 * 119.99965 * 179.72524 * 21 20 19 23 23 N 1.65604 * 107.21478 * 270.01908 * 22 21 20 24 24 O 1.42097 * 106.40483 * 23.55965 * 22 21 20 25 25 O 1.42102 * 106.40212 * 156.48347 * 22 21 20 26 26 C 1.38238 * 119.99569 * 359.74477 * 21 20 19 27 27 C 1.38231 * 120.00402 * 359.97438 * 26 21 20 28 28 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 30 30 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 31 31 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 32 32 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 33 33 H 0.96999 * 119.99893 * 179.97438 * 8 7 5 34 34 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 35 35 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 36 36 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 37 37 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 38 38 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 39 39 H 1.08002 * 119.99812 * 359.97438 * 19 18 17 40 40 H 1.08005 * 119.99882 * 180.22514 * 20 19 18 41 41 H 0.97000 * 120.00251 * 0.02562 * 23 22 21 42 42 H 0.97002 * 119.99334 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.99487 * 179.97438 * 26 21 20 44 44 H 1.08004 * 119.99945 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8799 1.3809 10 1 6.5005 2.2798 1.3807 11 1 6.3980 0.2155 2.6496 12 1 6.5967 0.1452 0.2341 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 6 -1.7879 4.5532 -3.8144 19 6 -1.5366 5.8996 -4.0018 20 6 -1.8999 6.5121 -5.1866 21 6 -2.5239 5.7806 -6.1798 22 16 -2.9934 6.5630 -7.6871 23 7 -4.5334 7.1367 -7.4825 24 8 -2.1559 7.7025 -7.8257 25 8 -3.0749 5.5347 -8.6645 26 6 -2.7798 4.4354 -5.9902 27 6 -2.4113 3.8216 -4.8078 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8294 -0.0619 2.9494 34 1 2.2719 2.1232 -1.9977 35 1 0.7225 4.1501 -2.8716 36 1 0.0680 2.6061 -3.4682 37 1 -2.0754 3.0670 -2.3098 38 1 -1.4210 4.6110 -1.7131 39 1 -1.0533 6.4721 -3.2239 40 1 -1.7003 7.5632 -5.3345 41 1 -4.9920 7.0047 -6.6380 42 1 -4.9768 7.6047 -8.2072 43 1 -3.2677 3.8641 -6.7661 44 1 -2.6117 2.7707 -4.6596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613037791.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:33 Heat of formation + Delta-G solvation = -105.965026 kcal Electronic energy + Delta-G solvation = -26437.257115 eV Core-core repulsion = 22480.786550 eV Total energy + Delta-G solvation = -3956.470565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.91657 -38.97753 -37.47026 -36.15956 -35.31446 -34.13947 -33.59360 -32.41211 -31.42231 -31.13642 -29.90836 -27.10654 -25.05263 -23.24514 -23.00927 -21.73814 -20.13529 -19.90516 -19.33973 -18.79097 -17.75090 -17.24806 -16.63226 -16.44231 -15.93917 -15.54083 -15.33733 -15.22111 -14.88492 -14.50611 -14.36089 -13.91954 -13.63921 -13.32778 -12.98515 -12.76071 -12.53237 -12.42457 -12.32032 -12.30314 -11.99863 -11.91670 -11.67011 -11.46810 -11.28325 -11.05422 -11.00346 -10.95320 -10.91763 -10.83914 -10.35968 -10.20165 -9.67207 -9.56719 -9.40564 -9.09561 -8.98031 -8.52676 -7.85858 -6.15310 -4.24965 0.01501 0.42384 0.94971 2.72114 3.05275 3.23151 3.28771 3.29568 3.36036 3.38361 4.01211 4.12170 4.32459 4.49305 4.52960 4.62491 4.96673 5.00910 5.05299 5.15764 5.19696 5.30953 5.47902 5.54780 5.55049 5.69884 5.74213 5.80581 5.85371 6.08241 6.25724 6.35104 6.41304 6.48626 6.56793 6.61909 6.99686 7.15501 7.32965 7.42111 7.58394 7.69806 7.86766 8.15130 8.63556 8.74244 9.10046 9.42612 10.89881 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.001894 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.529374 B =14783.538283 C =15309.560355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.709 5.709 14 C 0.500 3.500 15 O -0.551 6.551 16 C -0.138 4.138 17 C -0.075 4.075 18 C -0.012 4.012 19 C -0.139 4.139 20 C -0.017 4.017 21 C -0.686 4.686 22 S 2.703 3.297 23 N -1.251 6.251 24 O -0.966 6.966 25 O -0.966 6.966 26 C -0.017 4.017 27 C -0.139 4.139 28 H 0.022 0.978 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.265 0.735 34 H 0.388 0.612 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.417 0.583 42 H 0.419 0.581 43 H 0.142 0.858 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.465 11.359 -16.930 25.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.356 5.356 14 C 0.285 3.715 15 O -0.430 6.430 16 C -0.178 4.178 17 C -0.113 4.113 18 C -0.012 4.012 19 C -0.157 4.157 20 C -0.036 4.036 21 C -0.774 4.774 22 S 2.793 3.207 23 N -0.926 5.926 24 O -0.955 6.955 25 O -0.955 6.955 26 C -0.036 4.036 27 C -0.158 4.158 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.154 0.846 40 H 0.160 0.840 41 H 0.244 0.756 42 H 0.249 0.751 43 H 0.159 0.841 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.264 11.227 -16.852 25.358 hybrid contribution 0.916 -0.187 0.523 1.071 sum -14.348 11.040 -16.329 24.380 Atomic orbital electron populations 1.21833 0.98376 0.97986 1.01161 1.21936 0.92592 0.99868 1.02271 1.18771 0.94156 0.89161 0.81067 0.93365 1.21198 0.90759 1.39142 1.06289 0.92180 1.24889 0.98624 0.94796 0.95391 1.69881 1.35234 1.37479 1.09351 0.86514 0.84836 0.78313 0.77460 1.20194 1.21131 1.20167 1.46518 1.14719 1.55833 1.18552 1.20286 0.82829 0.79423 0.88998 1.90673 1.51471 1.60102 1.40788 1.21659 0.96896 1.01451 0.97805 1.20520 0.96413 1.01165 0.93172 1.20484 0.91541 0.93715 0.95473 1.21297 1.01607 0.94784 0.98045 1.20961 0.91462 0.99789 0.91383 1.30400 1.18900 1.05914 1.22184 1.01444 0.72506 0.73698 0.73096 1.53076 1.36582 1.77078 1.25844 1.93604 1.65904 1.50766 1.85207 1.93604 1.85964 1.58678 1.57247 1.20957 0.93614 0.92173 0.96862 1.21287 1.00297 1.00757 0.93411 0.95906 0.93179 0.94328 0.95086 0.88306 0.92495 0.77958 0.89275 0.89346 0.89454 0.89419 0.84598 0.84045 0.75612 0.75067 0.84055 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.16 0.32 -2.63 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.59 2.24 -69.08 -0.15 6.44 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.35 11.29 55.43 0.63 -23.73 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.71 -13.87 5.02 -54.93 -0.28 -14.14 16 14 C 0.50 8.96 6.40 -10.98 -0.07 8.89 16 15 O -0.55 -11.78 13.12 5.55 0.07 -11.71 16 16 C -0.14 -1.71 5.68 -27.88 -0.16 -1.87 16 17 C -0.08 -0.84 4.63 -27.89 -0.13 -0.97 16 18 C -0.01 -0.11 5.13 -104.63 -0.54 -0.65 16 19 C -0.14 -1.24 9.70 -39.58 -0.38 -1.62 16 20 C -0.02 -0.14 9.52 -39.58 -0.38 -0.52 16 21 C -0.69 -5.71 5.94 -39.58 -0.24 -5.94 16 22 S 2.70 21.37 6.28 -107.50 -0.68 20.70 16 23 N -1.25 -4.89 9.55 60.35 0.58 -4.32 16 24 O -0.97 -10.72 17.28 -57.17 -0.99 -11.71 16 25 O -0.97 -10.70 17.28 -57.17 -0.99 -11.69 16 26 C -0.02 -0.14 9.52 -39.58 -0.38 -0.52 16 27 C -0.14 -1.23 9.70 -39.59 -0.38 -1.62 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 30 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 33 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.39 6.61 8.54 -40.82 -0.35 6.26 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 1.03 8.04 -51.93 -0.42 0.61 16 38 H 0.09 1.04 8.04 -51.93 -0.42 0.62 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.14 0.98 7.62 -52.48 -0.40 0.58 16 41 H 0.42 0.75 8.92 -34.48 -0.31 0.44 16 42 H 0.42 0.99 8.96 -34.47 -0.31 0.68 16 43 H 0.14 0.97 7.62 -52.49 -0.40 0.57 16 44 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -35.14 376.64 -10.11 -45.24 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.08 Total: 7.01 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -3.03 Total: -16.67 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.93 Total: -42.19 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -1.90 Total: -35.10 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 21.37 SS G_CDS: -0.68 Total: 20.70 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.14 -10.11 -45.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037791.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.720 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds