Wall clock time and date at job start Sat Apr 11 2020 05:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31515 * 119.99867 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00050 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47175 * 60.00893 * 9 7 5 11 11 H 1.48504 * 109.47307 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47672 * 300.00505 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 C 1.50697 * 109.47491 * 179.97438 * 17 16 14 19 19 C 1.38237 * 119.99934 * 269.72981 * 18 17 16 20 20 C 1.38235 * 119.99947 * 179.76211 * 19 18 17 21 21 C 1.38233 * 120.00063 * 0.50577 * 20 19 18 22 22 S 1.76194 * 119.99965 * 179.72524 * 21 20 19 23 23 N 1.65604 * 107.21478 * 270.01908 * 22 21 20 24 24 O 1.42097 * 106.40483 * 23.55965 * 22 21 20 25 25 O 1.42102 * 106.40212 * 156.48347 * 22 21 20 26 26 C 1.38238 * 119.99569 * 359.74477 * 21 20 19 27 27 C 1.38231 * 120.00402 * 359.97438 * 26 21 20 28 28 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 30 30 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 31 31 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 32 32 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 33 33 H 0.96999 * 119.99893 * 179.97438 * 8 7 5 34 34 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 35 35 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 36 36 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 37 37 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 38 38 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 39 39 H 1.08002 * 119.99812 * 359.97438 * 19 18 17 40 40 H 1.08005 * 119.99882 * 180.22514 * 20 19 18 41 41 H 0.97000 * 120.00251 * 0.02562 * 23 22 21 42 42 H 0.97002 * 119.99334 * 180.02562 * 23 22 21 43 43 H 1.08000 * 119.99487 * 179.97438 * 26 21 20 44 44 H 1.08004 * 119.99945 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8799 1.3809 10 1 6.5005 2.2798 1.3807 11 1 6.3980 0.2155 2.6496 12 1 6.5967 0.1452 0.2341 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 6 -1.7879 4.5532 -3.8144 19 6 -1.5366 5.8996 -4.0018 20 6 -1.8999 6.5121 -5.1866 21 6 -2.5239 5.7806 -6.1798 22 16 -2.9934 6.5630 -7.6871 23 7 -4.5334 7.1367 -7.4825 24 8 -2.1559 7.7025 -7.8257 25 8 -3.0749 5.5347 -8.6645 26 6 -2.7798 4.4354 -5.9902 27 6 -2.4113 3.8216 -4.8078 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8294 -0.0619 2.9494 34 1 2.2719 2.1232 -1.9977 35 1 0.7225 4.1501 -2.8716 36 1 0.0680 2.6061 -3.4682 37 1 -2.0754 3.0670 -2.3098 38 1 -1.4210 4.6110 -1.7131 39 1 -1.0533 6.4721 -3.2239 40 1 -1.7003 7.5632 -5.3345 41 1 -4.9920 7.0047 -6.6380 42 1 -4.9768 7.6047 -8.2072 43 1 -3.2677 3.8641 -6.7661 44 1 -2.6117 2.7707 -4.6596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613037791.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:32 Heat of formation + Delta-G solvation = -132.806642 kcal Electronic energy + Delta-G solvation = -26438.421054 eV Core-core repulsion = 22480.786550 eV Total energy + Delta-G solvation = -3957.634505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.89424 -40.21397 -38.22026 -37.02708 -36.91197 -35.12650 -34.26776 -34.01758 -32.83764 -32.06344 -30.93483 -28.91955 -26.17218 -24.78874 -23.89061 -22.70187 -21.70367 -20.99101 -20.51673 -19.36759 -18.88119 -18.31692 -17.61995 -17.22972 -17.12411 -17.00616 -16.55767 -16.15049 -15.99960 -15.89297 -15.25603 -14.96619 -14.65183 -14.56431 -14.37723 -14.09925 -13.64257 -13.33477 -13.25406 -13.20105 -13.17906 -13.10940 -13.07860 -12.86174 -12.82285 -12.65548 -12.36808 -12.18264 -12.04979 -11.84782 -11.74716 -11.56536 -11.32962 -11.05047 -10.66751 -10.50097 -10.16194 -10.04970 -9.58073 -8.15823 -6.32958 -0.60878 -0.26217 0.30197 1.44654 1.45789 1.53556 1.92585 2.14578 2.35505 2.40934 2.70480 2.81215 3.13422 3.47702 3.68688 3.82240 3.93067 4.02460 4.19582 4.33160 4.36070 4.47980 4.50900 4.59207 4.63784 4.72449 4.80024 4.84201 5.01525 5.07466 5.08210 5.14883 5.18610 5.28367 5.29268 5.45487 5.52894 5.57588 5.65990 5.81678 5.82735 5.95219 6.19085 6.35453 6.75941 7.04833 7.34816 7.64948 8.88976 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.001894 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.529374 B =14783.538283 C =15309.560355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.266 1.266 13 N -0.709 5.709 14 C 0.496 3.504 15 O -0.589 6.589 16 C -0.124 4.124 17 C -0.067 4.067 18 C -0.020 4.020 19 C -0.143 4.143 20 C -0.023 4.023 21 C -0.683 4.683 22 S 2.728 3.272 23 N -1.235 6.235 24 O -0.998 6.998 25 O -0.998 6.998 26 C -0.023 4.023 27 C -0.142 4.142 28 H 0.043 0.957 29 H 0.024 0.976 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.264 0.736 34 H 0.403 0.597 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.429 0.571 42 H 0.429 0.571 43 H 0.156 0.844 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.521 11.937 -18.908 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.358 5.358 14 C 0.283 3.717 15 O -0.470 6.470 16 C -0.164 4.164 17 C -0.105 4.105 18 C -0.020 4.020 19 C -0.162 4.162 20 C -0.042 4.042 21 C -0.771 4.771 22 S 2.818 3.182 23 N -0.915 5.915 24 O -0.987 6.987 25 O -0.987 6.987 26 C -0.042 4.042 27 C -0.161 4.161 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.238 0.762 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.164 0.836 40 H 0.172 0.828 41 H 0.259 0.741 42 H 0.262 0.738 43 H 0.173 0.827 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.334 11.827 -18.875 27.041 hybrid contribution 0.840 -0.319 1.145 1.455 sum -14.494 11.508 -17.730 25.629 Atomic orbital electron populations 1.21668 0.96793 0.99078 1.00386 1.21785 0.93928 0.99245 1.01135 1.18320 0.93406 0.89170 0.81677 0.98471 1.21574 0.91683 1.38840 1.06585 0.91165 1.25758 1.03169 0.94490 0.95131 1.70039 1.37038 1.38330 1.09857 0.85461 0.79342 0.78410 0.77492 1.19696 1.21291 1.19034 1.46312 1.15952 1.56120 1.17431 1.21235 0.81551 0.78415 0.90451 1.90662 1.52367 1.61229 1.42763 1.21624 0.97943 1.02095 0.94721 1.20381 0.95504 1.00737 0.93905 1.20326 0.92724 0.94068 0.94875 1.21467 1.01518 0.94685 0.98529 1.21167 0.91289 1.00557 0.91201 1.30402 1.18759 1.06054 1.21920 1.00470 0.72776 0.72678 0.72313 1.52671 1.35188 1.76693 1.26947 1.93568 1.67603 1.51852 1.85717 1.93568 1.86664 1.59727 1.58731 1.21177 0.93578 0.92301 0.97122 1.21468 0.99882 1.01468 0.93255 0.93770 0.95628 0.93341 0.94197 0.91257 0.92656 0.76244 0.87247 0.86960 0.90200 0.90454 0.83556 0.82755 0.74075 0.73818 0.82669 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.51 71.98 0.61 -4.68 16 2 C -0.12 -5.87 5.45 30.60 0.17 -5.71 16 3 C 0.28 13.85 2.24 44.24 0.10 13.95 16 4 H 0.00 -0.16 7.58 -2.38 -0.02 -0.17 16 5 C -0.55 -28.49 8.73 25.60 0.22 -28.27 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.01 0.78 5.29 84.65 0.45 1.23 16 8 N -0.91 -51.81 11.29 21.45 0.24 -51.57 16 9 Si 0.97 41.66 29.54 68.60 2.03 43.68 16 10 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 11 H -0.29 -12.33 7.11 99.48 0.71 -11.63 16 12 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 13 N -0.71 -27.43 5.02 -446.09 -2.24 -29.67 16 14 C 0.50 17.49 6.40 87.66 0.56 18.05 16 15 O -0.59 -25.58 13.12 -3.04 -0.04 -25.62 16 16 C -0.12 -2.81 5.68 29.85 0.17 -2.64 16 17 C -0.07 -1.42 4.63 29.85 0.14 -1.28 16 18 C -0.02 -0.34 5.13 -19.87 -0.10 -0.44 16 19 C -0.14 -2.27 9.70 22.27 0.22 -2.06 16 20 C -0.02 -0.34 9.52 22.27 0.21 -0.13 16 21 C -0.68 -10.03 5.94 22.27 0.13 -9.90 16 22 S 2.73 39.04 6.28 -56.49 -0.35 38.68 16 23 N -1.23 -7.14 9.55 37.02 0.35 -6.78 16 24 O -1.00 -20.98 17.28 -128.00 -2.21 -23.19 16 25 O -1.00 -20.84 17.28 -128.00 -2.21 -23.05 16 26 C -0.02 -0.33 9.52 22.27 0.21 -0.12 16 27 C -0.14 -2.20 9.70 22.27 0.22 -1.99 16 28 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.02 1.20 7.85 -2.38 -0.02 1.18 16 30 H 0.05 1.98 5.64 -2.39 -0.01 1.96 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 3.78 5.95 -2.39 -0.01 3.76 16 33 H 0.26 14.27 8.31 -92.71 -0.77 13.49 16 34 H 0.40 13.13 8.54 -92.71 -0.79 12.33 16 35 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.08 1.79 8.04 -2.38 -0.02 1.78 16 38 H 0.08 1.78 8.04 -2.39 -0.02 1.76 16 39 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.15 1.84 7.62 -2.91 -0.02 1.82 16 41 H 0.43 0.52 8.92 -96.74 -0.86 -0.34 16 42 H 0.43 1.13 8.96 -96.74 -0.87 0.26 16 43 H 0.16 1.79 7.62 -2.91 -0.02 1.77 16 44 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -77.11 376.64 -2.60 -79.70 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -1.47 Total: 21.81 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 3.31 Total: -23.99 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -1.64 Total: -88.02 kcal Atomic # 8 Polarization: -67.39 SS G_CDS: -4.46 Total: -71.86 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 39.04 SS G_CDS: -0.35 Total: 38.68 kcal Total: -77.11 -2.60 -79.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613037791.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.102 kcal (2) G-P(sol) polarization free energy of solvation -77.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds