Wall clock time and date at job start Sat Apr 11 2020 05:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.46755 * 2 1 4 4 N 1.46500 * 109.47331 * 119.99720 * 2 1 3 5 5 C 1.34775 * 120.00235 * 84.99899 * 4 2 1 6 6 O 1.21279 * 119.99600 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00420 * 179.97438 * 5 4 2 8 8 N 1.46501 * 109.47321 * 180.02562 * 7 5 4 9 9 C 1.46493 * 119.99998 * 275.00227 * 8 7 5 10 10 S 1.65600 * 119.99845 * 94.99903 * 8 7 5 11 11 O 1.42096 * 106.39804 * 156.45779 * 10 8 7 12 12 O 1.42101 * 106.40093 * 23.54522 * 10 8 7 13 13 C 1.76194 * 107.21812 * 270.00097 * 10 8 7 14 14 C 1.38662 * 119.87943 * 270.29400 * 13 10 8 15 15 C 1.38613 * 120.50337 * 180.26219 * 14 13 10 16 16 C 1.37635 * 120.24644 * 359.44170 * 15 14 13 17 17 C 1.40700 * 119.74734 * 0.27966 * 16 15 14 18 18 C 1.41393 * 120.24808 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00329 * 204.39358 * 18 17 16 20 20 C 1.39942 * 119.99793 * 24.38823 * 18 17 16 21 21 N 1.30830 * 119.99921 * 17.86190 * 20 18 17 22 22 Si 1.86807 * 120.00314 * 197.85679 * 20 18 17 23 23 H 1.48504 * 109.46865 * 90.00477 * 22 20 18 24 24 H 1.48493 * 109.47164 * 210.00257 * 22 20 18 25 25 H 1.48499 * 109.47067 * 330.00626 * 22 20 18 26 26 C 1.37597 * 119.87678 * 90.00554 * 13 10 8 27 27 H 1.08995 * 109.47640 * 60.00022 * 1 2 3 28 28 H 1.09002 * 109.47277 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47433 * 299.99935 * 1 2 3 30 30 H 1.08997 * 109.47406 * 239.99654 * 2 1 3 31 31 H 1.09005 * 109.47042 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47024 * 299.99575 * 3 2 1 33 33 H 1.09002 * 109.47831 * 59.99939 * 3 2 1 34 34 H 0.97002 * 119.99840 * 265.00641 * 4 2 1 35 35 H 1.09001 * 109.46872 * 60.00487 * 7 5 4 36 36 H 1.08996 * 109.47138 * 300.00373 * 7 5 4 37 37 H 1.09003 * 109.47209 * 269.99805 * 9 8 7 38 38 H 1.09002 * 109.47318 * 29.99844 * 9 8 7 39 39 H 1.09002 * 109.47126 * 149.99656 * 9 8 7 40 40 H 1.07998 * 119.74547 * 0.02562 * 14 13 10 41 41 H 1.07991 * 119.87429 * 179.72331 * 15 14 13 42 42 H 1.07998 * 120.12988 * 180.25464 * 16 15 14 43 43 H 0.97008 * 119.99884 * 179.97438 * 21 20 18 44 44 H 1.08005 * 120.12756 * 0.03422 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1471 -2.0321 1.1945 6 8 1.8590 -2.6676 0.2025 7 6 2.6500 -2.7424 2.4248 8 7 2.6997 -4.1843 2.1702 9 6 1.4999 -5.0033 2.3591 10 16 4.1123 -4.8883 1.6687 11 8 4.0290 -6.2591 2.0336 12 8 5.1619 -4.0321 2.0983 13 6 4.1216 -4.8419 -0.0926 14 6 3.5748 -5.8922 -0.8142 15 6 3.5800 -5.8716 -2.2001 16 6 4.1191 -4.8004 -2.8756 17 6 4.6716 -3.7264 -2.1538 18 6 5.2287 -2.6208 -2.8369 19 1 5.9771 -2.0095 -2.3549 20 6 4.8103 -2.3189 -4.1378 21 7 3.6881 -2.8121 -4.5950 22 14 5.8540 -1.2115 -5.2213 23 1 6.8190 -2.0381 -5.9899 24 1 4.9766 -0.4710 -6.1631 25 1 6.5961 -0.2452 -4.3724 26 6 4.6660 -3.7608 -0.7469 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 2.2490 -0.1822 1.9895 35 1 1.9778 -2.5435 3.2594 36 1 3.6493 -2.3823 2.6692 37 1 1.4683 -5.3702 3.3851 38 1 0.6136 -4.4004 2.1614 39 1 1.5251 -5.8487 1.6716 40 1 3.1450 -6.7344 -0.2923 41 1 3.1554 -6.6971 -2.7520 42 1 4.1185 -4.7844 -3.9554 43 1 3.3979 -2.6026 -5.4967 44 1 5.0877 -2.9419 -0.1830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619474070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:37 Heat of formation + Delta-G solvation = -89.141005 kcal Electronic energy + Delta-G solvation = -29007.690851 eV Core-core repulsion = 25051.949830 eV Total energy + Delta-G solvation = -3955.741021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.56892 -37.47831 -36.72228 -36.26947 -35.34024 -35.04585 -33.71880 -31.54937 -29.94158 -29.64560 -28.34719 -27.17541 -25.36001 -25.01304 -21.82318 -21.40960 -20.85785 -20.27598 -18.64742 -17.90120 -17.23460 -16.93386 -16.19842 -15.82433 -15.54321 -15.14320 -14.81227 -14.60336 -14.15629 -14.08313 -13.82366 -13.34379 -13.25865 -13.03108 -12.91371 -12.55109 -12.47244 -12.28521 -12.19863 -11.96148 -11.77942 -11.55333 -11.37394 -11.33565 -11.30930 -11.27907 -11.15947 -10.90964 -10.83409 -10.78865 -10.53330 -9.98909 -9.62393 -9.42951 -9.25036 -8.85325 -8.69895 -7.84562 -7.54203 -6.80271 -4.40313 1.00231 2.35612 2.75860 2.95630 3.03884 3.07593 3.13859 3.20827 3.59519 3.89599 4.30124 4.52463 4.83446 4.85049 4.91899 5.07206 5.15666 5.33230 5.34825 5.39625 5.56352 5.58021 5.68641 5.74605 5.79388 5.93679 6.02585 6.04314 6.15599 6.24591 6.29181 6.32705 6.58956 6.72919 6.75456 6.90096 7.03629 7.16213 7.37383 7.53003 7.71771 7.87210 7.92966 8.08269 8.53089 8.55498 8.79901 8.86182 10.15077 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008819 B = 0.005910 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.339787 B = 4736.640430 C = 6821.479758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.135 3.865 3 C -0.158 4.158 4 N -0.731 5.731 5 C 0.478 3.522 6 O -0.491 6.491 7 C 0.100 3.900 8 N -0.985 5.985 9 C 0.102 3.898 10 S 2.685 3.315 11 O -0.971 6.971 12 O -0.973 6.973 13 C -0.619 4.619 14 C -0.141 4.141 15 C -0.121 4.121 16 C -0.117 4.117 17 C 0.096 3.904 18 C -0.462 4.462 19 H 0.079 0.921 20 C 0.076 3.924 21 N -0.793 5.793 22 Si 0.907 3.093 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.106 4.106 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.395 0.605 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.281 0.719 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.558 6.205 10.457 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 C -0.216 4.216 4 N -0.386 5.386 5 C 0.261 3.739 6 O -0.363 6.363 7 C -0.030 4.030 8 N -0.819 5.819 9 C -0.043 4.043 10 S 2.783 3.217 11 O -0.961 6.961 12 O -0.964 6.964 13 C -0.712 4.712 14 C -0.162 4.162 15 C -0.140 4.140 16 C -0.137 4.137 17 C 0.093 3.907 18 C -0.492 4.492 19 H 0.097 0.903 20 C -0.141 4.141 21 N -0.419 5.419 22 Si 0.732 3.268 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.127 4.127 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.228 0.772 35 H 0.125 0.875 36 H 0.137 0.863 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.140 0.860 43 H 0.091 0.909 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.326 5.366 10.121 13.086 hybrid contribution 0.010 1.074 -1.043 1.498 sum -6.316 6.441 9.078 12.798 Atomic orbital electron populations 1.22145 0.95767 1.02412 1.01403 1.20918 0.93671 0.92756 0.89609 1.22048 1.02035 0.95200 1.02284 1.46038 1.68974 1.06954 1.16591 1.21391 0.79116 0.82630 0.90808 1.90879 1.46601 1.65286 1.33516 1.21189 1.04887 0.80902 0.96023 1.57199 1.28058 1.13807 1.82885 1.21393 0.86989 0.94820 1.01114 1.01851 0.71874 0.72729 0.75253 1.93507 1.85977 1.32934 1.83699 1.93496 1.52713 1.67990 1.82189 1.29540 1.15325 1.04251 1.22042 1.19982 1.04686 0.97218 0.94363 1.20745 1.01297 0.98192 0.93794 1.21576 0.99969 0.92159 0.99999 1.17599 0.90284 0.92322 0.90527 1.19536 1.20616 1.10900 0.98138 0.90313 1.25878 0.94060 0.95938 0.98238 1.69820 1.17128 1.37636 1.17267 0.86328 0.80474 0.80257 0.79777 1.19242 1.20319 1.18583 1.20556 1.01790 0.95367 0.94998 0.91959 0.92166 0.93042 0.88592 0.91768 0.91197 0.92560 0.77206 0.87518 0.86302 0.92657 0.91273 0.90720 0.88019 0.88668 0.85968 0.90853 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.48 37.15 0.35 -1.51 16 2 C 0.13 1.77 3.18 -67.93 -0.22 1.55 16 3 C -0.16 -1.60 9.38 37.16 0.35 -1.25 16 4 N -0.73 -8.92 5.08 -53.81 -0.27 -9.19 16 5 C 0.48 7.40 7.86 -10.99 -0.09 7.31 16 6 O -0.49 -10.09 15.43 5.56 0.09 -10.00 16 7 C 0.10 1.29 6.14 -5.19 -0.03 1.26 16 8 N -0.98 -15.51 2.68 -123.06 -0.33 -15.84 16 9 C 0.10 1.36 10.30 59.84 0.62 1.97 16 10 S 2.69 53.38 5.64 -107.50 -0.61 52.77 16 11 O -0.97 -20.48 16.35 -57.17 -0.93 -21.41 16 12 O -0.97 -20.49 15.82 -57.17 -0.90 -21.39 16 13 C -0.62 -14.45 5.62 -39.66 -0.22 -14.67 16 14 C -0.14 -3.30 9.53 -39.29 -0.37 -3.68 16 15 C -0.12 -2.91 10.02 -39.66 -0.40 -3.31 16 16 C -0.12 -3.09 8.70 -38.87 -0.34 -3.43 16 17 C 0.10 2.60 5.58 -106.82 -0.60 2.00 16 18 C -0.46 -12.29 9.05 -37.74 -0.34 -12.63 16 19 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 20 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 21 N -0.79 -20.39 10.95 55.55 0.61 -19.79 16 22 Si 0.91 18.59 29.60 -169.99 -5.03 13.56 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.55 7.11 56.52 0.40 -5.14 16 25 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 26 C -0.11 -2.67 8.95 -38.87 -0.35 -3.02 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.10 1.69 7.58 -51.93 -0.39 1.30 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.39 3.33 8.60 -40.82 -0.35 2.98 16 35 H 0.11 0.91 8.11 -51.93 -0.42 0.48 16 36 H 0.12 1.47 6.91 -51.93 -0.36 1.11 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 39 H 0.07 1.06 7.79 -51.93 -0.40 0.66 16 40 H 0.10 2.15 7.61 -52.49 -0.40 1.75 16 41 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 42 H 0.12 3.26 6.15 -52.49 -0.32 2.94 16 43 H 0.28 6.56 8.30 -40.82 -0.34 6.23 16 44 H 0.10 2.50 7.60 -52.48 -0.40 2.10 16 LS Contribution 381.48 15.07 5.75 5.75 Total: -1.00 -33.83 381.48 -9.76 -43.60 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -6.40 Total: 9.53 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -1.73 Total: -27.58 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.01 Total: -44.82 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -1.75 Total: -52.81 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: 53.38 SS G_CDS: -0.61 Total: 52.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.83 -9.76 -43.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619474070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.546 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds