Wall clock time and date at job start Sat Apr 11 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47444 * 2 1 4 4 C 1.52993 * 109.46957 * 299.99852 * 3 2 1 5 5 C 1.52998 * 109.47310 * 300.00262 * 4 3 2 6 6 N 1.46494 * 109.46766 * 60.00031 * 3 2 1 7 7 S 1.65599 * 120.00228 * 60.00287 * 6 3 2 8 8 O 1.42097 * 106.39977 * 311.45352 * 7 6 3 9 9 O 1.42103 * 106.40388 * 178.53548 * 7 6 3 10 10 C 1.76196 * 107.22018 * 64.99555 * 7 6 3 11 11 C 1.38660 * 119.87611 * 270.25360 * 10 7 6 12 12 C 1.38616 * 120.49665 * 180.30139 * 11 10 7 13 13 C 1.37635 * 120.25182 * 359.44433 * 12 11 10 14 14 C 1.40694 * 119.74565 * 0.27435 * 13 12 11 15 15 C 1.41391 * 120.24907 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00480 * 155.21688 * 15 14 13 17 17 C 1.39951 * 119.99816 * 335.21682 * 15 14 13 18 18 N 1.30825 * 119.99805 * 342.30713 * 17 15 14 19 19 Si 1.86793 * 120.00358 * 162.30851 * 17 15 14 20 20 H 1.48508 * 109.47060 * 59.99752 * 19 17 15 21 21 H 1.48497 * 109.47400 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47026 * 299.99864 * 19 17 15 23 23 C 1.37598 * 119.87471 * 89.99816 * 10 7 6 24 24 C 1.50698 * 109.46794 * 179.97438 * 3 2 1 25 25 N 1.34777 * 119.99679 * 205.00005 * 24 3 2 26 26 O 1.21278 * 120.00066 * 25.00499 * 24 3 2 27 27 H 1.09002 * 109.47258 * 59.99821 * 1 2 3 28 28 H 1.09004 * 109.47571 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47378 * 300.00411 * 1 2 3 30 30 H 1.09000 * 109.46894 * 239.99376 * 2 1 3 31 31 H 1.09001 * 109.46776 * 120.00395 * 2 1 3 32 32 H 1.09004 * 109.47183 * 59.99913 * 4 3 2 33 33 H 1.08997 * 109.47144 * 179.97438 * 4 3 2 34 34 H 1.08996 * 109.47803 * 60.00024 * 5 4 3 35 35 H 1.09010 * 109.47199 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.47130 * 299.99601 * 5 4 3 37 37 H 0.97000 * 119.99926 * 239.99283 * 6 3 2 38 38 H 1.07998 * 119.74750 * 0.04564 * 11 10 7 39 39 H 1.08001 * 119.87144 * 179.72477 * 12 11 10 40 40 H 1.08001 * 120.12636 * 180.25595 * 13 12 11 41 41 H 0.96999 * 120.00317 * 179.97438 * 18 17 15 42 42 H 1.07999 * 120.12881 * 0.02562 * 23 10 7 43 43 H 0.97000 * 120.00198 * 359.97438 * 25 24 3 44 44 H 0.97004 * 120.00081 * 180.02562 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 2.0401 1.4424 -2.4984 6 7 1.5518 2.1330 1.1962 7 16 1.9518 1.5672 2.7002 8 8 1.6878 0.1711 2.6870 9 8 1.3626 2.4608 3.6349 10 6 3.6962 1.7421 2.8763 11 6 4.5368 0.7113 2.4845 12 6 5.9106 0.8326 2.6231 13 6 6.4561 1.9849 3.1417 14 6 5.6133 3.0398 3.5371 15 6 6.1622 4.2280 4.0717 16 1 5.6122 5.1551 4.0044 17 6 7.4184 4.2030 4.6881 18 7 7.9311 3.0657 5.0822 19 14 8.3631 5.7933 4.9483 20 1 7.5637 6.7102 5.8002 21 1 9.6555 5.4976 5.6173 22 1 8.6209 6.4365 3.6348 23 6 4.2195 2.9032 3.3972 24 6 3.5471 1.4423 0.0006 25 7 4.2208 2.5002 0.4941 26 8 4.1535 0.4903 -0.4429 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 0.4401 2.1637 -1.2493 33 1 1.8931 3.1914 -1.2490 34 1 1.6767 0.4147 -2.4985 35 1 1.6771 1.9565 -3.3885 36 1 3.1301 1.4423 -2.4985 37 1 0.9942 2.9217 1.1072 38 1 4.1176 -0.1946 2.0721 39 1 6.5557 0.0216 2.3187 40 1 7.5271 2.0789 3.2449 41 1 8.8019 3.0482 5.5091 42 1 3.5632 3.7063 3.6983 43 1 3.7357 3.2618 0.8484 44 1 5.1908 2.5003 0.4942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619480368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:48 Heat of formation + Delta-G solvation = -92.052987 kcal Electronic energy + Delta-G solvation = -29922.319250 eV Core-core repulsion = 25966.451956 eV Total energy + Delta-G solvation = -3955.867294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.29724 -37.81342 -36.87304 -36.48244 -35.39392 -34.02283 -33.27592 -32.16888 -30.96386 -30.10926 -29.81151 -26.57899 -25.52259 -23.77861 -22.03880 -21.70736 -21.02874 -19.47660 -18.87731 -17.95396 -17.47926 -17.42082 -16.47585 -15.94510 -15.48749 -15.21666 -15.15221 -14.84169 -14.72057 -14.12203 -13.76647 -13.48214 -13.35086 -13.13853 -12.97534 -12.67719 -12.57730 -12.08807 -11.97085 -11.78362 -11.67231 -11.59052 -11.43260 -11.42745 -11.30979 -11.24822 -11.11897 -10.91210 -10.79025 -10.64392 -10.49104 -10.06561 -9.78819 -9.57914 -9.42898 -9.07751 -9.03680 -7.97417 -7.69978 -6.95544 -4.57605 0.87636 2.12989 2.59655 2.82047 2.96936 2.98158 3.04374 3.44238 3.74886 3.79166 4.13416 4.39163 4.63328 4.73479 4.82767 5.07042 5.16693 5.22039 5.34899 5.40990 5.50127 5.54922 5.74452 5.77558 5.90725 5.98941 6.04738 6.15653 6.18037 6.19489 6.38914 6.62710 6.66112 6.72842 6.78587 6.98377 7.04547 7.17420 7.22644 7.34102 7.72322 7.73744 7.75415 7.90293 8.35566 8.60916 8.63271 8.67289 9.99836 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.004203 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.541404 B = 6660.625008 C = 7078.847425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.147 4.147 3 C 0.170 3.830 4 C -0.116 4.116 5 C -0.156 4.156 6 N -1.116 6.116 7 S 2.677 3.323 8 O -0.963 6.963 9 O -0.969 6.969 10 C -0.628 4.628 11 C -0.128 4.128 12 C -0.115 4.115 13 C -0.116 4.116 14 C 0.095 3.905 15 C -0.464 4.464 16 H 0.081 0.919 17 C 0.076 3.924 18 N -0.792 5.792 19 Si 0.911 3.089 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.133 4.133 24 C 0.508 3.492 25 N -0.829 5.829 26 O -0.533 6.533 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.417 0.583 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.284 0.716 42 H 0.110 0.890 43 H 0.399 0.601 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.818 0.896 -11.115 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.186 4.186 3 C 0.078 3.922 4 C -0.155 4.155 5 C -0.213 4.213 6 N -0.874 5.874 7 S 2.774 3.226 8 O -0.953 6.953 9 O -0.960 6.960 10 C -0.721 4.721 11 C -0.149 4.149 12 C -0.135 4.135 13 C -0.136 4.136 14 C 0.091 3.909 15 C -0.493 4.493 16 H 0.099 0.901 17 C -0.143 4.143 18 N -0.417 5.417 19 Si 0.735 3.265 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.154 4.154 24 C 0.290 3.710 25 N -0.391 5.391 26 O -0.408 6.408 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.251 0.749 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.140 0.860 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.228 0.772 44 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -8.898 -0.398 -10.664 13.894 hybrid contribution 1.253 1.664 0.369 2.116 sum -7.645 1.266 -10.295 12.885 Atomic orbital electron populations 1.21698 0.95198 1.01756 1.01257 1.22277 0.96689 0.93274 1.06336 1.20456 0.90295 0.94915 0.86558 1.21739 1.02022 0.99271 0.92517 1.21856 1.02301 1.01015 0.96171 1.55850 1.66389 1.43011 1.22138 1.02064 0.75310 0.73579 0.71634 1.93486 1.84951 1.31513 1.85326 1.93553 1.77345 1.66149 1.58914 1.29636 1.21702 1.03733 1.17025 1.20109 0.93782 0.96653 1.04382 1.20769 0.94238 0.97659 1.00838 1.21640 1.00237 0.93641 0.98106 1.17589 0.90253 0.93105 0.89920 1.19547 1.01428 0.95651 1.32714 0.90094 1.25915 0.97408 0.97865 0.93067 1.69771 1.16985 1.27381 1.27595 0.86317 0.78763 0.81874 0.79544 1.18897 1.20303 1.18770 1.20648 0.95721 0.95122 1.03911 1.20566 0.89756 0.82849 0.77863 1.44009 1.11583 1.20310 1.63243 1.90714 1.69555 1.33919 1.46653 0.92929 0.92439 0.92865 0.89672 0.87327 0.89750 0.90903 0.91576 0.92353 0.91835 0.74910 0.87676 0.88604 0.85958 0.90494 0.87248 0.77221 0.76094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.37 37.16 0.35 -1.27 16 2 C -0.15 -2.01 3.68 -26.73 -0.10 -2.11 16 3 C 0.17 2.16 0.54 -132.98 -0.07 2.09 16 4 C -0.12 -1.10 4.74 -26.74 -0.13 -1.23 16 5 C -0.16 -1.51 9.25 37.16 0.34 -1.17 16 6 N -1.12 -14.09 4.03 -0.41 0.00 -14.09 16 7 S 2.68 46.99 5.63 -107.50 -0.61 46.39 16 8 O -0.96 -18.65 13.86 -57.17 -0.79 -19.44 16 9 O -0.97 -19.30 17.27 -57.17 -0.99 -20.29 16 10 C -0.63 -12.53 3.29 -39.66 -0.13 -12.67 16 11 C -0.13 -2.66 6.17 -39.29 -0.24 -2.91 16 12 C -0.12 -2.49 9.63 -39.66 -0.38 -2.87 16 13 C -0.12 -2.69 8.70 -38.87 -0.34 -3.03 16 14 C 0.09 2.22 5.57 -106.82 -0.60 1.63 16 15 C -0.46 -11.08 9.05 -37.74 -0.34 -11.42 16 16 H 0.08 1.84 7.91 -52.49 -0.41 1.42 16 17 C 0.08 1.76 5.14 -17.34 -0.09 1.67 16 18 N -0.79 -19.16 10.97 55.55 0.61 -18.55 16 19 Si 0.91 17.41 29.59 -169.99 -5.03 12.38 16 20 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 21 H -0.28 -5.26 7.11 56.52 0.40 -4.85 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 23 C -0.13 -2.84 8.20 -38.87 -0.32 -3.16 16 24 C 0.51 7.79 3.14 -10.99 -0.03 7.75 16 25 N -0.83 -12.19 5.44 31.22 0.17 -12.02 16 26 O -0.53 -9.71 15.69 5.56 0.09 -9.62 16 27 H 0.05 0.47 6.43 -51.93 -0.33 0.14 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.63 7.60 -51.93 -0.39 0.24 16 30 H 0.08 1.12 6.16 -51.93 -0.32 0.80 16 31 H 0.11 1.82 5.36 -51.93 -0.28 1.54 16 32 H 0.08 0.66 6.43 -51.93 -0.33 0.32 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.64 6.43 -51.93 -0.33 0.31 16 35 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 36 H 0.06 0.74 6.83 -51.93 -0.35 0.38 16 37 H 0.42 3.94 8.60 -34.47 -0.30 3.64 16 38 H 0.11 2.20 7.25 -52.49 -0.38 1.82 16 39 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 40 H 0.12 2.95 6.18 -52.49 -0.32 2.63 16 41 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 42 H 0.11 2.27 7.60 -52.49 -0.40 1.87 16 43 H 0.40 5.25 7.14 -40.82 -0.29 4.96 16 44 H 0.41 6.47 8.49 -40.82 -0.35 6.12 16 LS Contribution 349.48 15.07 5.27 5.27 Total: -1.00 -29.65 349.48 -8.99 -38.64 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -5.63 Total: 20.04 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -2.08 Total: -28.69 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.78 Total: -44.67 kcal Atomic # 8 Polarization: -47.66 SS G_CDS: -1.69 Total: -49.35 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Atomic # 16 Polarization: 46.99 SS G_CDS: -0.61 Total: 46.39 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.65 -8.99 -38.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619480368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.413 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds