Wall clock time and date at job start Sat Apr 11 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47444 * 2 1 4 4 C 1.52993 * 109.46957 * 299.99852 * 3 2 1 5 5 C 1.52998 * 109.47310 * 300.00262 * 4 3 2 6 6 N 1.46494 * 109.46766 * 60.00031 * 3 2 1 7 7 S 1.65599 * 120.00228 * 60.00287 * 6 3 2 8 8 O 1.42097 * 106.39977 * 311.45352 * 7 6 3 9 9 O 1.42103 * 106.40388 * 178.53548 * 7 6 3 10 10 C 1.76196 * 107.22018 * 64.99555 * 7 6 3 11 11 C 1.38660 * 119.87611 * 270.25360 * 10 7 6 12 12 C 1.38616 * 120.49665 * 180.30139 * 11 10 7 13 13 C 1.37635 * 120.25182 * 359.44433 * 12 11 10 14 14 C 1.40694 * 119.74565 * 0.27435 * 13 12 11 15 15 C 1.41391 * 120.24907 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00480 * 155.21688 * 15 14 13 17 17 C 1.39951 * 119.99816 * 335.21682 * 15 14 13 18 18 N 1.30825 * 119.99805 * 342.30713 * 17 15 14 19 19 Si 1.86793 * 120.00358 * 162.30851 * 17 15 14 20 20 H 1.48508 * 109.47060 * 59.99752 * 19 17 15 21 21 H 1.48497 * 109.47400 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47026 * 299.99864 * 19 17 15 23 23 C 1.37598 * 119.87471 * 89.99816 * 10 7 6 24 24 C 1.50698 * 109.46794 * 179.97438 * 3 2 1 25 25 N 1.34777 * 119.99679 * 205.00005 * 24 3 2 26 26 O 1.21278 * 120.00066 * 25.00499 * 24 3 2 27 27 H 1.09002 * 109.47258 * 59.99821 * 1 2 3 28 28 H 1.09004 * 109.47571 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47378 * 300.00411 * 1 2 3 30 30 H 1.09000 * 109.46894 * 239.99376 * 2 1 3 31 31 H 1.09001 * 109.46776 * 120.00395 * 2 1 3 32 32 H 1.09004 * 109.47183 * 59.99913 * 4 3 2 33 33 H 1.08997 * 109.47144 * 179.97438 * 4 3 2 34 34 H 1.08996 * 109.47803 * 60.00024 * 5 4 3 35 35 H 1.09010 * 109.47199 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.47130 * 299.99601 * 5 4 3 37 37 H 0.97000 * 119.99926 * 239.99283 * 6 3 2 38 38 H 1.07998 * 119.74750 * 0.04564 * 11 10 7 39 39 H 1.08001 * 119.87144 * 179.72477 * 12 11 10 40 40 H 1.08001 * 120.12636 * 180.25595 * 13 12 11 41 41 H 0.96999 * 120.00317 * 179.97438 * 18 17 15 42 42 H 1.07999 * 120.12881 * 0.02562 * 23 10 7 43 43 H 0.97000 * 120.00198 * 359.97438 * 25 24 3 44 44 H 0.97004 * 120.00081 * 180.02562 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 -1.2492 5 6 2.0401 1.4424 -2.4984 6 7 1.5518 2.1330 1.1962 7 16 1.9518 1.5672 2.7002 8 8 1.6878 0.1711 2.6870 9 8 1.3626 2.4608 3.6349 10 6 3.6962 1.7421 2.8763 11 6 4.5368 0.7113 2.4845 12 6 5.9106 0.8326 2.6231 13 6 6.4561 1.9849 3.1417 14 6 5.6133 3.0398 3.5371 15 6 6.1622 4.2280 4.0717 16 1 5.6122 5.1551 4.0044 17 6 7.4184 4.2030 4.6881 18 7 7.9311 3.0657 5.0822 19 14 8.3631 5.7933 4.9483 20 1 7.5637 6.7102 5.8002 21 1 9.6555 5.4976 5.6173 22 1 8.6209 6.4365 3.6348 23 6 4.2195 2.9032 3.3972 24 6 3.5471 1.4423 0.0006 25 7 4.2208 2.5002 0.4941 26 8 4.1535 0.4903 -0.4429 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 0.4401 2.1637 -1.2493 33 1 1.8931 3.1914 -1.2490 34 1 1.6767 0.4147 -2.4985 35 1 1.6771 1.9565 -3.3885 36 1 3.1301 1.4423 -2.4985 37 1 0.9942 2.9217 1.1072 38 1 4.1176 -0.1946 2.0721 39 1 6.5557 0.0216 2.3187 40 1 7.5271 2.0789 3.2449 41 1 8.8019 3.0482 5.5091 42 1 3.5632 3.7063 3.6983 43 1 3.7357 3.2618 0.8484 44 1 5.1908 2.5003 0.4942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619480368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:47 Heat of formation + Delta-G solvation = -113.683601 kcal Electronic energy + Delta-G solvation = -29923.257224 eV Core-core repulsion = 25966.451956 eV Total energy + Delta-G solvation = -3956.805268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48544 -39.48140 -38.34151 -37.73552 -36.92333 -35.70826 -34.55204 -33.21726 -31.93725 -31.84574 -31.52012 -27.62441 -27.27840 -24.65667 -23.64284 -22.93854 -22.71508 -20.73947 -20.23655 -19.51010 -18.75120 -18.64959 -17.84509 -17.54106 -16.92271 -16.59040 -16.48448 -16.25056 -16.08310 -15.33378 -15.21497 -15.03566 -14.83111 -14.33795 -14.22429 -13.97027 -13.67586 -13.61863 -13.23611 -13.14823 -13.05652 -13.01744 -12.84720 -12.77427 -12.67093 -12.56083 -12.39443 -12.20866 -12.16433 -11.83323 -11.54594 -11.52341 -11.28423 -11.11839 -11.05959 -10.42821 -10.30950 -9.64896 -9.45306 -8.69283 -6.39635 -0.57397 0.43273 0.88874 1.40146 1.48605 1.51657 1.59338 2.08867 2.19509 2.53991 2.60160 2.78878 3.41779 3.55140 3.70069 3.76036 4.04123 4.08792 4.33671 4.38129 4.45395 4.51100 4.58069 4.74236 4.86578 4.88664 4.94901 4.95838 5.07016 5.09372 5.20186 5.24508 5.30371 5.38296 5.41711 5.44071 5.59668 5.65172 5.94937 5.96707 5.97931 6.07341 6.12575 6.55668 6.57414 6.85264 6.89728 7.38785 8.28008 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018136 B = 0.004203 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.541404 B = 6660.625008 C = 7078.847425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.151 4.151 3 C 0.174 3.826 4 C -0.113 4.113 5 C -0.155 4.155 6 N -1.092 6.092 7 S 2.703 3.297 8 O -0.978 6.978 9 O -0.988 6.988 10 C -0.629 4.629 11 C -0.126 4.126 12 C -0.118 4.118 13 C -0.131 4.131 14 C 0.077 3.923 15 C -0.494 4.494 16 H 0.086 0.914 17 C 0.037 3.963 18 N -0.827 5.827 19 Si 0.980 3.020 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.257 1.257 23 C -0.132 4.132 24 C 0.504 3.496 25 N -0.827 5.827 26 O -0.566 6.566 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.436 0.564 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.289 0.711 42 H 0.117 0.883 43 H 0.406 0.594 44 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.693 2.328 -12.384 16.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.190 4.190 3 C 0.081 3.919 4 C -0.152 4.152 5 C -0.213 4.213 6 N -0.856 5.856 7 S 2.797 3.203 8 O -0.967 6.967 9 O -0.979 6.979 10 C -0.718 4.718 11 C -0.147 4.147 12 C -0.138 4.138 13 C -0.151 4.151 14 C 0.074 3.926 15 C -0.523 4.523 16 H 0.104 0.896 17 C -0.178 4.178 18 N -0.453 5.453 19 Si 0.801 3.199 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.153 4.153 24 C 0.286 3.714 25 N -0.388 5.388 26 O -0.444 6.444 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.276 0.724 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.099 0.901 42 H 0.135 0.865 43 H 0.237 0.763 44 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -10.774 1.061 -11.916 16.100 hybrid contribution 1.762 1.123 0.690 2.201 sum -9.012 2.185 -11.227 14.561 Atomic orbital electron populations 1.21734 0.93129 1.02513 1.02496 1.22269 0.98520 0.93332 1.04875 1.20548 0.88348 0.95230 0.87731 1.21846 1.03721 0.99520 0.90093 1.21859 1.00719 1.01453 0.97295 1.55349 1.66022 1.43780 1.20404 1.01291 0.73721 0.72994 0.72318 1.93492 1.84508 1.32695 1.86030 1.93527 1.77044 1.66598 1.60688 1.30036 1.23702 1.02634 1.15476 1.20111 0.93532 0.96852 1.04234 1.20875 0.94896 0.97468 1.00518 1.21506 0.99533 0.94467 0.99630 1.17821 0.91235 0.93307 0.90242 1.19855 1.02607 0.96074 1.33754 0.89573 1.26722 0.97863 1.00925 0.92324 1.69838 1.17562 1.29401 1.28453 0.85265 0.77285 0.77733 0.79574 1.18556 1.19949 1.18086 1.20719 0.95112 0.95788 1.03718 1.21080 0.90972 0.82227 0.77087 1.44039 1.11322 1.20574 1.62882 1.90697 1.70495 1.35083 1.48095 0.89840 0.92147 0.93352 0.89445 0.90609 0.86831 0.89201 0.91684 0.89924 0.94343 0.72449 0.87828 0.87873 0.87542 0.90057 0.86520 0.76349 0.76948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.37 71.98 0.67 -2.14 16 2 C -0.15 -3.89 3.68 30.59 0.11 -3.78 16 3 C 0.17 4.05 0.54 2.86 0.00 4.06 16 4 C -0.11 -1.72 4.74 30.59 0.15 -1.58 16 5 C -0.16 -2.59 9.25 71.98 0.67 -1.92 16 6 N -1.09 -24.96 4.03 -155.21 -0.63 -25.59 16 7 S 2.70 91.64 5.63 -56.49 -0.32 91.33 16 8 O -0.98 -37.13 13.86 -128.00 -1.77 -38.91 16 9 O -0.99 -37.82 17.27 -128.00 -2.21 -40.03 16 10 C -0.63 -25.00 3.29 22.22 0.07 -24.92 16 11 C -0.13 -5.33 6.17 22.46 0.14 -5.19 16 12 C -0.12 -5.25 9.63 22.22 0.21 -5.03 16 13 C -0.13 -6.28 8.70 22.73 0.20 -6.09 16 14 C 0.08 3.69 5.57 -21.29 -0.12 3.57 16 15 C -0.49 -23.89 9.05 23.46 0.21 -23.68 16 16 H 0.09 3.93 7.91 -2.91 -0.02 3.91 16 17 C 0.04 1.73 5.14 85.26 0.44 2.17 16 18 N -0.83 -40.92 10.97 21.83 0.24 -40.68 16 19 Si 0.98 35.63 29.59 68.60 2.03 37.66 16 20 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 21 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 23 C -0.13 -5.68 8.20 22.73 0.19 -5.49 16 24 C 0.50 15.12 3.14 87.66 0.28 15.39 16 25 N -0.83 -24.02 5.44 -173.54 -0.94 -24.96 16 26 O -0.57 -20.79 15.69 -3.02 -0.05 -20.84 16 27 H 0.08 1.13 6.43 -2.39 -0.02 1.11 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.00 7.60 -2.39 -0.02 0.99 16 30 H 0.09 2.20 6.16 -2.39 -0.01 2.19 16 31 H 0.08 2.50 5.36 -2.39 -0.01 2.49 16 32 H 0.11 1.15 6.43 -2.39 -0.02 1.13 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.09 6.43 -2.39 -0.02 1.08 16 35 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.04 0.84 6.83 -2.39 -0.02 0.82 16 37 H 0.44 6.68 8.60 -96.75 -0.83 5.84 16 38 H 0.10 4.41 7.25 -2.91 -0.02 4.39 16 39 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.11 5.39 6.18 -2.91 -0.02 5.37 16 41 H 0.29 13.10 8.30 -92.71 -0.77 12.33 16 42 H 0.12 4.78 7.60 -2.91 -0.02 4.76 16 43 H 0.41 10.27 7.14 -92.71 -0.66 9.61 16 44 H 0.40 12.95 8.49 -92.70 -0.79 12.16 16 Total: -1.00 -65.22 349.48 -1.64 -66.86 By element: Atomic # 1 Polarization: 51.01 SS G_CDS: -1.20 Total: 49.80 kcal Atomic # 6 Polarization: -57.85 SS G_CDS: 3.22 Total: -54.63 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -1.33 Total: -91.23 kcal Atomic # 8 Polarization: -95.75 SS G_CDS: -4.03 Total: -99.78 kcal Atomic # 14 Polarization: 35.63 SS G_CDS: 2.03 Total: 37.66 kcal Atomic # 16 Polarization: 91.64 SS G_CDS: -0.32 Total: 91.33 kcal Total: -65.22 -1.64 -66.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619480368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.828 kcal (2) G-P(sol) polarization free energy of solvation -65.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds