Wall clock time and date at job start Sat Apr 11 2020 05:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47261 * 2 1 4 4 N 1.46498 * 109.47109 * 179.97438 * 3 2 1 5 5 C 1.46506 * 120.00111 * 82.70228 * 4 3 2 6 6 C 1.50692 * 109.47161 * 81.25488 * 5 4 3 7 7 O 1.21284 * 120.00108 * 4.94667 * 6 5 4 8 8 N 1.34774 * 120.00173 * 184.94660 * 6 5 4 9 9 C 1.46504 * 120.00158 * 184.99399 * 8 6 5 10 10 S 1.65603 * 120.00102 * 262.70276 * 4 3 2 11 11 O 1.42099 * 106.40175 * 15.66888 * 10 4 3 12 12 O 1.42109 * 106.40278 * 148.59059 * 10 4 3 13 13 C 1.76197 * 107.21690 * 262.12836 * 10 4 3 14 14 C 1.37639 * 120.12680 * 246.81107 * 13 10 4 15 15 C 1.38616 * 120.24640 * 179.97438 * 14 13 10 16 16 C 1.38658 * 120.50227 * 0.03508 * 15 14 13 17 17 C 1.37599 * 120.24560 * 0.02562 * 16 15 14 18 18 C 1.40694 * 120.12617 * 66.54201 * 13 10 4 19 19 C 1.41388 * 120.24619 * 359.97438 * 18 13 10 20 20 H 1.08001 * 120.00320 * 34.50240 * 19 18 13 21 21 C 1.39955 * 120.00148 * 214.50645 * 19 18 13 22 22 N 1.30822 * 119.99524 * 6.29106 * 21 19 18 23 23 Si 1.86797 * 119.99885 * 186.29075 * 21 19 18 24 24 H 1.48495 * 109.47184 * 64.97826 * 23 21 19 25 25 H 1.48505 * 109.46918 * 184.97409 * 23 21 19 26 26 H 1.48501 * 109.47566 * 304.97103 * 23 21 19 27 27 H 1.09006 * 109.46758 * 59.99724 * 1 2 3 28 28 H 1.08997 * 109.47740 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47252 * 300.00910 * 1 2 3 30 30 H 1.09000 * 109.47252 * 239.99090 * 2 1 3 31 31 H 1.09010 * 109.46337 * 120.00008 * 2 1 3 32 32 H 1.09001 * 109.47643 * 59.99930 * 3 2 1 33 33 H 1.08995 * 109.47048 * 299.99619 * 3 2 1 34 34 H 1.08997 * 109.47216 * 201.26200 * 5 4 3 35 35 H 1.09004 * 109.46845 * 321.25267 * 5 4 3 36 36 H 0.97001 * 120.00157 * 4.99057 * 8 6 5 37 37 H 1.09001 * 109.47029 * 180.02562 * 9 8 6 38 38 H 1.08994 * 109.47188 * 300.00370 * 9 8 6 39 39 H 1.09004 * 109.47130 * 60.00032 * 9 8 6 40 40 H 1.07992 * 119.87979 * 0.02562 * 14 13 10 41 41 H 1.08003 * 119.75054 * 180.02562 * 15 14 13 42 42 H 1.08004 * 119.87509 * 179.97438 * 16 15 14 43 43 H 1.08003 * 120.12564 * 179.97438 * 17 16 15 44 44 H 0.97001 * 119.99473 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2381 1.2810 -1.2575 6 6 4.3025 2.6048 -1.9747 7 8 3.8664 3.6041 -1.4436 8 7 4.8448 2.6783 -3.2063 9 6 5.0074 3.9799 -3.8587 10 16 4.3325 1.6247 1.4235 11 8 3.3960 1.3872 2.4655 12 8 5.5407 0.8902 1.2820 13 6 4.7928 3.3211 1.5453 14 6 6.1195 3.6828 1.4866 15 6 6.4845 5.0167 1.5816 16 6 5.5202 6.0008 1.7375 17 6 4.1880 5.6621 1.8000 18 6 3.8053 4.3117 1.6974 19 6 2.4389 3.9525 1.7528 20 1 2.1427 3.0258 2.2217 21 6 1.4702 4.7978 1.1999 22 7 1.8352 5.8573 0.5248 23 14 -0.3437 4.4132 1.4259 24 1 -0.6952 4.5126 2.8652 25 1 -1.1561 5.3844 0.6498 26 1 -0.6221 3.0371 0.9421 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5140 0.8899 30 1 1.8934 -0.5140 -0.8899 31 1 1.8932 -0.5139 0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6768 1.9562 -0.8900 34 1 5.2490 0.9322 -1.0469 35 1 3.7258 0.5520 -1.8855 36 1 5.1275 1.8693 -3.6609 37 1 5.4589 3.8402 -4.8409 38 1 4.0325 4.4541 -3.9714 39 1 5.6514 4.6139 -3.2492 40 1 6.8790 2.9247 1.3651 41 1 7.5279 5.2916 1.5341 42 1 5.8159 7.0370 1.8109 43 1 3.4385 6.4301 1.9218 44 1 1.1637 6.4430 0.1412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619572718.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:02 Heat of formation + Delta-G solvation = -86.362578 kcal Electronic energy + Delta-G solvation = -30194.897593 eV Core-core repulsion = 26239.277054 eV Total energy + Delta-G solvation = -3955.620539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.16122 -37.43245 -36.49185 -36.06292 -34.85776 -34.07527 -33.65711 -32.53764 -30.05834 -29.42680 -28.48465 -26.04336 -25.29374 -24.23442 -21.55635 -21.17452 -20.96087 -20.14906 -18.15306 -17.50225 -17.18103 -16.91651 -16.11588 -15.73057 -15.29367 -14.91248 -14.72051 -14.40146 -14.27167 -13.93935 -13.52436 -13.21526 -13.04981 -12.93772 -12.81871 -12.61035 -12.08629 -12.01490 -11.84535 -11.71289 -11.68457 -11.34950 -11.17165 -11.13340 -11.10608 -11.03523 -10.98505 -10.76382 -10.51016 -10.41006 -10.02850 -9.74967 -9.55486 -9.27889 -9.05502 -8.73246 -8.32577 -7.83779 -7.34524 -6.80210 -4.58220 1.52277 2.50600 2.86800 3.03283 3.07443 3.18929 3.21270 3.46948 3.88695 3.91761 4.58876 4.77317 5.11735 5.15593 5.26708 5.39498 5.40577 5.46298 5.57473 5.59644 5.64920 5.75178 5.86940 6.04554 6.10386 6.12856 6.16503 6.25335 6.34459 6.39235 6.50184 6.67631 6.74104 6.76922 6.94092 7.10058 7.15730 7.29261 7.50909 7.64260 7.83283 7.86287 7.95127 8.10979 8.51343 8.72319 8.76991 8.84087 10.13842 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008317 B = 0.007742 C = 0.006484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.950885 B = 3615.622930 C = 4317.387836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.122 3.878 4 N -0.970 5.970 5 C 0.105 3.895 6 C 0.467 3.533 7 O -0.465 6.465 8 N -0.748 5.748 9 C 0.094 3.906 10 S 2.700 3.300 11 O -0.969 6.969 12 O -1.000 7.000 13 C -0.758 4.758 14 C -0.008 4.008 15 C -0.246 4.246 16 C -0.079 4.079 17 C -0.148 4.148 18 C 0.216 3.784 19 C -0.480 4.480 20 H 0.111 0.889 21 C 0.087 3.913 22 N -0.771 5.771 23 Si 0.896 3.104 24 H -0.261 1.261 25 H -0.278 1.278 26 H -0.253 1.253 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.394 0.606 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.118 0.882 44 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 -6.672 -8.836 11.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.003 4.003 4 N -0.802 5.802 5 C -0.025 4.025 6 C 0.249 3.751 7 O -0.334 6.334 8 N -0.404 5.404 9 C -0.050 4.050 10 S 2.800 3.200 11 O -0.960 6.960 12 O -0.991 6.991 13 C -0.854 4.854 14 C -0.028 4.028 15 C -0.266 4.266 16 C -0.098 4.098 17 C -0.168 4.168 18 C 0.212 3.788 19 C -0.509 4.509 20 H 0.129 0.871 21 C -0.134 4.134 22 N -0.394 5.394 23 Si 0.720 3.280 24 H -0.185 1.185 25 H -0.203 1.203 26 H -0.177 1.177 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.227 0.773 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.136 0.864 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.154 -6.412 -7.953 10.217 hybrid contribution -0.486 0.582 -0.807 1.107 sum -0.640 -5.830 -8.760 10.542 Atomic orbital electron populations 1.21699 0.95605 1.01188 1.02203 1.22018 0.95976 0.98460 1.01984 1.21603 0.77942 0.95342 1.05453 1.57177 1.14774 1.87720 1.20548 1.21043 0.99329 0.94761 0.87400 1.21605 0.79028 0.92800 0.81674 1.91004 1.41946 1.36081 1.64371 1.45815 1.66497 1.09500 1.18595 1.21391 1.01685 0.85582 0.96381 1.01131 0.71873 0.74821 0.72161 1.93472 1.62929 1.86307 1.53247 1.93420 1.46910 1.72243 1.86523 1.29696 1.00850 1.21743 1.33096 1.20162 0.93528 0.95698 0.93386 1.20417 0.97136 0.93186 1.15862 1.20852 0.94169 0.96869 0.97943 1.21454 0.94062 0.97306 1.03940 1.16827 0.91030 0.90312 0.80657 1.20284 0.90897 1.07182 1.32539 0.87114 1.25835 1.01300 0.93668 0.92610 1.69793 1.36420 1.10685 1.22522 0.86549 0.81478 0.80036 0.79920 1.18547 1.20309 1.17689 0.92909 0.92911 0.92224 0.92336 0.91596 0.87228 0.91263 0.86910 0.88389 0.77331 0.91572 0.92617 0.92479 0.87991 0.89108 0.89194 0.86376 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.14 -2.17 6.24 -26.73 -0.17 -2.33 16 3 C 0.12 2.23 4.80 -4.05 -0.02 2.21 16 4 N -0.97 -18.44 2.30 -115.67 -0.27 -18.70 16 5 C 0.11 1.61 6.18 -5.19 -0.03 1.58 16 6 C 0.47 7.98 7.85 -10.99 -0.09 7.89 16 7 O -0.47 -10.45 16.00 5.55 0.09 -10.36 16 8 N -0.75 -9.53 5.71 -67.08 -0.38 -9.91 16 9 C 0.09 1.17 10.71 59.85 0.64 1.81 16 10 S 2.70 61.00 5.09 -107.50 -0.55 60.45 16 11 O -0.97 -23.64 14.51 -57.17 -0.83 -24.47 16 12 O -1.00 -22.76 15.69 -57.17 -0.90 -23.65 16 13 C -0.76 -18.88 5.57 -38.87 -0.22 -19.10 16 14 C -0.01 -0.18 9.54 -39.66 -0.38 -0.56 16 15 C -0.25 -5.67 10.05 -39.29 -0.39 -6.07 16 16 C -0.08 -1.89 10.02 -39.66 -0.40 -2.28 16 17 C -0.15 -3.84 8.62 -38.87 -0.34 -4.18 16 18 C 0.22 5.70 5.49 -106.83 -0.59 5.12 16 19 C -0.48 -12.30 6.31 -37.74 -0.24 -12.54 16 20 H 0.11 2.84 4.20 -52.49 -0.22 2.62 16 21 C 0.09 2.11 5.30 -17.34 -0.09 2.02 16 22 N -0.77 -19.34 11.04 55.55 0.61 -18.73 16 23 Si 0.90 18.24 29.22 -169.99 -4.97 13.27 16 24 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 26 H -0.25 -4.83 7.11 56.52 0.40 -4.43 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16 31 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 32 H 0.11 2.30 4.04 -51.93 -0.21 2.09 16 33 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 34 H 0.11 1.63 7.00 -51.93 -0.36 1.26 16 35 H 0.10 1.09 7.91 -51.93 -0.41 0.68 16 36 H 0.39 3.42 8.83 -40.82 -0.36 3.06 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 2.24 7.32 -52.49 -0.38 1.86 16 41 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 42 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 43 H 0.12 3.11 6.54 -52.48 -0.34 2.77 16 44 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -32.57 370.78 -9.60 -42.17 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.07 Total: 12.42 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: -1.93 Total: -28.07 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.04 Total: -47.35 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -1.64 Total: -58.48 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -4.97 Total: 13.27 kcal Atomic # 16 Polarization: 61.00 SS G_CDS: -0.55 Total: 60.45 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.57 -9.60 -42.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572718.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.193 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds