Wall clock time and date at job start Sat Apr 11 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47223 * 2 1 4 4 C 1.52997 * 109.47340 * 120.00011 * 2 1 3 5 5 N 1.46908 * 109.47377 * 58.25375 * 4 2 1 6 6 C 1.46902 * 110.99685 * 74.47560 * 5 4 2 7 7 C 1.50698 * 109.47070 * 284.91436 * 6 5 4 8 8 H 1.07992 * 120.00064 * 354.55211 * 7 6 5 9 9 C 1.37880 * 119.99769 * 174.54789 * 7 6 5 10 10 N 1.31516 * 119.99900 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00114 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47237 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47030 * 120.00105 * 11 9 7 14 14 H 1.48505 * 109.47271 * 240.00513 * 11 9 7 15 15 C 1.46891 * 110.99989 * 198.43334 * 5 4 2 16 16 C 1.50703 * 109.47701 * 66.04436 * 15 5 4 17 17 O 1.21290 * 119.99202 * 359.97438 * 16 15 5 18 18 N 1.34770 * 120.00419 * 179.97438 * 16 15 5 19 19 C 1.39498 * 120.00232 * 184.44812 * 18 16 15 20 20 C 1.38129 * 123.50614 * 352.31946 * 19 18 16 21 21 C 1.33587 * 115.08758 * 180.28988 * 20 19 18 22 22 S 1.70559 * 111.21167 * 359.72506 * 21 20 19 23 23 C 1.37540 * 123.51340 * 172.09688 * 19 18 16 24 24 C 1.41468 * 125.48219 * 0.02562 * 23 19 18 25 25 O 1.21711 * 120.00258 * 359.72525 * 24 23 19 26 26 O 1.34981 * 120.00086 * 179.71650 * 24 23 19 27 27 H 1.09002 * 109.46768 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47101 * 299.99616 * 1 2 3 29 29 H 1.08997 * 109.47521 * 60.00164 * 1 2 3 30 30 H 1.08998 * 109.46997 * 239.99955 * 2 1 3 31 31 H 1.08999 * 109.46829 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46890 * 299.99975 * 3 2 1 33 33 H 1.08998 * 109.47170 * 60.00062 * 3 2 1 34 34 H 1.09005 * 109.47183 * 298.25581 * 4 2 1 35 35 H 1.09005 * 109.47477 * 178.25256 * 4 2 1 36 36 H 1.08994 * 109.47214 * 44.91633 * 6 5 4 37 37 H 1.09001 * 109.46337 * 164.91367 * 6 5 4 38 38 H 0.97002 * 119.99913 * 180.02562 * 10 9 7 39 39 H 1.08998 * 109.47581 * 306.04474 * 15 5 4 40 40 H 1.09001 * 109.47021 * 186.04694 * 15 5 4 41 41 H 0.97001 * 120.00044 * 4.45371 * 18 16 15 42 42 H 1.07997 * 122.45877 * 0.02562 * 20 19 18 43 43 H 1.07999 * 124.38864 * 179.72467 * 21 20 19 44 44 H 0.96699 * 114.00077 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.5162 -2.0936 1.2706 6 6 2.2119 -2.9379 0.2901 7 6 1.7268 -2.6015 -1.0964 8 1 0.9155 -1.9012 -1.2296 9 6 2.3188 -3.1877 -2.1950 10 7 3.3065 -4.0408 -2.0328 11 14 1.7180 -2.7703 -3.9137 12 1 0.6051 -1.7912 -3.8249 13 1 2.8330 -2.1818 -4.6985 14 1 1.2387 -4.0057 -4.5843 15 6 1.6050 -2.6700 2.6187 16 6 0.6845 -1.9204 3.5472 17 8 0.0203 -0.9966 3.1271 18 7 0.5993 -2.2766 4.8442 19 6 -0.3197 -1.6448 5.6822 20 6 -1.0672 -0.5467 5.3038 21 6 -1.8918 -0.0723 6.2417 22 16 -1.7875 -0.9892 7.6761 23 6 -0.5790 -2.0531 6.9697 24 6 0.0329 -3.1487 7.6228 25 8 0.8615 -3.8208 7.0371 26 8 -0.3021 -3.4487 8.8955 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.7025 -0.1896 2.1390 35 1 3.1296 -0.7485 1.2337 36 1 3.2852 -2.7586 0.3530 37 1 2.0056 -3.9868 0.5028 38 1 3.7233 -4.4530 -2.8057 39 1 2.6298 -2.5906 2.9812 40 1 1.3117 -3.7192 2.5853 41 1 1.1772 -2.9723 5.1951 42 1 -0.9878 -0.1015 4.3230 43 1 -2.5402 0.7811 6.1088 44 1 0.1678 -4.2131 9.2561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736438835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:12 Heat of formation + Delta-G solvation = -77.907815 kcal Electronic energy + Delta-G solvation = -27831.257545 eV Core-core repulsion = 23876.003632 eV Total energy + Delta-G solvation = -3955.253913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06161 -40.03823 -38.04747 -36.75487 -36.21028 -34.15203 -33.56784 -32.52842 -30.38862 -28.44441 -26.74817 -26.29158 -25.23391 -23.91986 -22.83996 -21.62880 -20.49302 -19.57716 -19.00690 -18.90426 -17.75473 -17.50393 -16.32887 -16.10272 -15.85214 -15.45327 -15.36884 -14.86647 -14.57788 -14.41774 -13.89625 -13.80750 -13.57064 -13.45449 -13.11360 -12.73231 -12.63388 -12.46036 -12.14214 -11.85902 -11.62723 -11.60045 -11.26419 -11.17965 -11.05627 -10.91324 -10.77494 -10.66453 -10.51743 -10.06549 -10.03445 -9.87986 -9.73507 -9.18048 -9.09802 -9.00372 -8.38507 -8.09586 -7.30908 -6.03119 -4.00792 0.06454 1.24017 1.64935 1.99012 2.47087 2.94210 3.02695 3.06336 3.31285 3.39566 3.44811 4.41257 4.51311 4.84510 4.88082 4.96836 5.25577 5.31256 5.47283 5.58165 5.68175 5.76433 5.80447 5.84369 5.94820 6.07253 6.12022 6.20245 6.36505 6.44050 6.48160 6.57837 6.72987 6.82505 6.91744 7.14564 7.28652 7.32369 7.40765 7.52116 7.55887 7.85974 8.03571 8.11557 8.17861 8.49726 9.06679 9.60652 11.07610 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017818 B = 0.002822 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.107071 B = 9917.902648 C =10903.809185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C -0.143 4.143 4 C 0.077 3.923 5 N -0.516 5.516 6 C 0.192 3.808 7 C -0.503 4.503 8 H 0.082 0.918 9 C 0.054 3.946 10 N -0.899 5.899 11 Si 0.891 3.109 12 H -0.270 1.270 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.039 3.961 16 C 0.515 3.485 17 O -0.481 6.481 18 N -0.650 5.650 19 C 0.267 3.733 20 C -0.180 4.180 21 C -0.196 4.196 22 S 0.233 5.767 23 C -0.358 4.358 24 C 0.565 3.435 25 O -0.528 6.528 26 O -0.506 6.506 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.027 0.973 30 H 0.112 0.888 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.018 0.982 36 H 0.000 1.000 37 H 0.025 0.975 38 H 0.260 0.740 39 H 0.058 0.942 40 H 0.106 0.894 41 H 0.426 0.574 42 H 0.192 0.808 43 H 0.176 0.824 44 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.539 6.020 20.878 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.122 4.122 3 C -0.201 4.201 4 C -0.051 4.051 5 N -0.241 5.241 6 C 0.067 3.933 7 C -0.542 4.542 8 H 0.100 0.900 9 C -0.147 4.147 10 N -0.539 5.539 11 Si 0.719 3.281 12 H -0.194 1.194 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.092 4.092 16 C 0.303 3.697 17 O -0.353 6.353 18 N -0.297 5.297 19 C 0.151 3.849 20 C -0.213 4.213 21 C -0.334 4.334 22 S 0.499 5.501 23 C -0.480 4.480 24 C 0.413 3.587 25 O -0.421 6.421 26 O -0.317 6.317 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.129 0.871 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.036 0.964 36 H 0.018 0.982 37 H 0.043 0.957 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.124 0.876 41 H 0.268 0.732 42 H 0.208 0.792 43 H 0.193 0.807 44 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -9.044 6.786 21.343 24.153 hybrid contribution 1.919 -0.853 -1.641 2.665 sum -7.125 5.933 19.703 21.775 Atomic orbital electron populations 1.21567 0.95333 1.02529 0.98472 1.21448 0.96399 0.93613 1.00737 1.21837 1.00136 0.97755 1.00375 1.22017 0.95292 0.89394 0.98393 1.61910 1.58398 1.02699 1.01125 1.19861 0.91839 0.91645 0.89909 1.21453 1.17849 1.25320 0.89536 0.89972 1.24996 0.95161 0.95309 0.99267 1.69968 1.24216 1.29476 1.30278 0.86527 0.78783 0.78306 0.84435 1.19394 1.21185 1.21124 1.21941 0.96283 0.99490 0.91522 1.21519 0.83269 0.84032 0.80868 1.90496 1.42377 1.27511 1.74916 1.43983 1.36715 1.39496 1.09538 1.17369 0.89112 0.90900 0.87537 1.20911 0.98490 0.97325 1.04573 1.25508 1.03928 1.05339 0.98638 1.83053 1.34857 1.19972 1.12262 1.21769 1.16801 1.09525 0.99856 1.17840 0.78955 0.82156 0.79752 1.90843 1.33641 1.51543 1.66088 1.85032 1.66072 1.52142 1.28432 0.90918 0.94217 0.95381 0.87061 0.93675 0.93415 0.94008 0.92276 0.96423 0.98220 0.95699 0.93070 0.92445 0.87607 0.73196 0.79179 0.80696 0.73102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.33 37.16 0.31 -2.04 16 2 C -0.10 -2.04 2.39 -90.62 -0.22 -2.25 16 3 C -0.14 -2.38 9.19 37.16 0.34 -2.04 16 4 C 0.08 1.51 3.97 -3.82 -0.02 1.49 16 5 N -0.52 -10.60 3.36 -237.51 -0.80 -11.39 16 6 C 0.19 4.70 4.76 -4.98 -0.02 4.68 16 7 C -0.50 -13.32 6.96 -34.44 -0.24 -13.56 16 8 H 0.08 2.15 4.45 -52.49 -0.23 1.91 16 9 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 10 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 11 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.04 0.66 5.43 -4.98 -0.03 0.63 16 16 C 0.51 8.08 7.32 -10.99 -0.08 8.00 16 17 O -0.48 -8.38 11.30 5.55 0.06 -8.32 16 18 N -0.65 -8.89 5.32 -10.46 -0.06 -8.94 16 19 C 0.27 3.50 6.63 -84.66 -0.56 2.94 16 20 C -0.18 -2.22 9.08 -41.25 -0.37 -2.59 16 21 C -0.20 -1.81 10.89 29.10 0.32 -1.49 16 22 S 0.23 2.03 22.82 -107.50 -2.45 -0.42 16 23 C -0.36 -4.17 6.28 -38.61 -0.24 -4.41 16 24 C 0.57 6.40 8.08 31.96 0.26 6.66 16 25 O -0.53 -7.00 15.22 -19.43 -0.30 -7.30 16 26 O -0.51 -4.11 13.30 -41.26 -0.55 -4.66 16 27 H 0.07 1.57 6.60 -51.93 -0.34 1.23 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.11 2.55 5.01 -51.93 -0.26 2.29 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.10 5.83 -51.93 -0.30 0.80 16 35 H 0.02 0.36 7.77 -51.93 -0.40 -0.05 16 36 H 0.00 0.00 7.76 -51.93 -0.40 -0.40 16 37 H 0.02 0.64 7.75 -51.93 -0.40 0.24 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 40 H 0.11 1.68 7.83 -51.93 -0.41 1.27 16 41 H 0.43 5.52 6.28 -40.82 -0.26 5.26 16 42 H 0.19 2.67 5.24 -52.52 -0.28 2.40 16 43 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.41 1.54 8.98 45.56 0.41 1.95 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -31.26 368.96 -8.44 -39.70 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -4.97 Total: 7.37 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.65 Total: -2.61 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.12 Total: -45.54 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.78 Total: -20.28 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.45 Total: -0.42 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.26 -8.44 -39.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736438835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.209 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds