Wall clock time and date at job start Sat Apr 11 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46968 * 2 1 4 4 C 1.50697 * 109.46800 * 180.02562 * 3 2 1 5 5 N 1.29393 * 124.70715 * 90.02781 * 4 3 2 6 6 C 1.30912 * 117.46730 * 179.97438 * 5 4 3 7 7 C 1.36756 * 113.93692 * 359.97438 * 6 5 4 8 8 C 1.46499 * 126.18281 * 179.97438 * 7 6 5 9 9 O 1.21607 * 119.99983 * 180.02562 * 8 7 6 10 10 O 1.34879 * 119.99858 * 0.03327 * 8 7 6 11 11 C 1.45202 * 116.99785 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47306 * 29.99811 * 11 10 8 13 13 C 1.52997 * 109.47156 * 269.99455 * 11 10 8 14 14 C 1.50705 * 109.46993 * 149.99640 * 11 10 8 15 15 O 1.21288 * 119.99736 * 14.97312 * 14 11 10 16 16 N 1.34775 * 120.00071 * 194.97460 * 14 11 10 17 17 C 1.46497 * 119.99963 * 4.86988 * 16 14 11 18 18 C 1.46501 * 119.99706 * 184.87809 * 16 14 11 19 19 C 1.50702 * 109.47099 * 90.00044 * 18 16 14 20 20 H 1.08001 * 120.00233 * 359.97438 * 19 18 16 21 21 C 1.37876 * 119.99731 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00060 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46733 * 89.99753 * 23 21 19 25 25 H 1.48497 * 109.47032 * 209.99282 * 23 21 19 26 26 H 1.48497 * 109.46929 * 330.00040 * 23 21 19 27 27 S 1.70930 * 124.70721 * 270.27804 * 4 3 2 28 28 H 1.08994 * 109.47554 * 59.99762 * 1 2 3 29 29 H 1.09004 * 109.46886 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46675 * 299.99275 * 1 2 3 31 31 H 1.09001 * 109.46393 * 240.00330 * 2 1 3 32 32 H 1.08995 * 109.47326 * 120.00730 * 2 1 3 33 33 H 1.08997 * 109.46830 * 60.00820 * 3 2 1 34 34 H 1.08994 * 109.47177 * 300.00469 * 3 2 1 35 35 H 1.07999 * 123.03299 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.46888 * 296.95702 * 13 11 10 37 37 H 1.08995 * 109.46828 * 56.95480 * 13 11 10 38 38 H 1.09000 * 109.47290 * 176.95845 * 13 11 10 39 39 H 1.09005 * 109.46906 * 84.70121 * 17 16 14 40 40 H 1.09001 * 109.47437 * 204.70010 * 17 16 14 41 41 H 1.08999 * 109.47366 * 324.70337 * 17 16 14 42 42 H 1.09007 * 109.46581 * 209.99402 * 18 16 14 43 43 H 1.08996 * 109.47020 * 329.99272 * 18 16 14 44 44 H 0.96999 * 119.99900 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2833 1.4431 -1.0647 6 6 5.5820 1.4435 -0.9002 7 6 5.9755 1.4437 0.4095 8 6 7.3568 1.4436 0.8976 9 8 7.5792 1.4433 2.0932 10 8 8.3818 1.4439 0.0209 11 6 9.7237 1.4444 0.5757 12 1 9.7196 0.9306 1.5370 13 6 10.1945 2.8870 0.7705 14 6 10.6583 0.7342 -0.3695 15 8 10.3139 0.5141 -1.5114 16 7 11.8766 0.3437 0.0542 17 6 12.2523 0.5130 1.4600 18 6 12.8253 -0.2501 -0.8913 19 6 13.6663 0.8374 -1.5086 20 1 13.5096 1.8678 -1.2254 21 6 14.6352 0.5170 -2.4358 22 7 14.8257 -0.7377 -2.7810 23 14 15.6773 1.8649 -3.2016 24 1 16.8919 2.0814 -2.3751 25 1 16.0776 1.4619 -4.5736 26 1 14.8909 3.1230 -3.2647 27 16 4.5208 1.4354 1.4041 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 6.2798 1.4436 -1.7245 36 1 10.2504 3.3848 -0.1976 37 1 9.4889 3.4161 1.4109 38 1 11.1798 2.8879 1.2368 39 1 11.8890 -0.3367 2.0380 40 1 13.3378 0.5705 1.5416 41 1 11.8098 1.4312 1.8463 42 1 13.4704 -0.9537 -0.3650 43 1 12.2777 -0.7747 -1.6742 44 1 15.5076 -0.9631 -3.4330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745264189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:17 Heat of formation + Delta-G solvation = -80.196290 kcal Electronic energy + Delta-G solvation = -26525.683788 eV Core-core repulsion = 22570.330640 eV Total energy + Delta-G solvation = -3955.353149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.77214 -39.95299 -38.88374 -36.43859 -35.65638 -34.91818 -32.88948 -31.95415 -30.97986 -28.58167 -27.79114 -26.12056 -25.02702 -24.46980 -23.14848 -22.23109 -21.78848 -20.14156 -18.97926 -18.27346 -17.81976 -16.73294 -16.55117 -16.18765 -16.08138 -15.56287 -15.22304 -15.01849 -14.71280 -14.60076 -14.43127 -14.28170 -13.71548 -13.41355 -13.21595 -12.87661 -12.61829 -12.40621 -12.20666 -12.19226 -12.09882 -11.93221 -11.76868 -11.73483 -11.44682 -11.26312 -11.24899 -11.02410 -10.92926 -10.77076 -10.58865 -10.19543 -9.97848 -9.86041 -9.68172 -9.25369 -8.95908 -8.47324 -7.75072 -6.08168 -4.13597 -0.20614 0.66568 1.25350 2.00274 2.51081 2.73573 3.19985 3.28076 3.35200 3.39657 3.60527 3.86573 4.37021 4.40659 4.47186 4.51207 4.59435 4.79093 4.88870 4.99049 5.02442 5.04118 5.06873 5.19500 5.26436 5.27505 5.44281 5.56997 5.63210 5.66298 5.68908 5.77478 5.80321 5.84257 6.04764 6.22339 6.25931 6.95598 7.24445 7.37405 7.43303 7.54915 7.87612 8.17144 8.25789 8.80599 8.95756 9.51581 10.99919 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022460 B = 0.002121 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.352277 B =13201.069251 C =13700.439824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.048 4.048 4 C 0.053 3.947 5 N -0.479 5.479 6 C 0.134 3.866 7 C -0.298 4.298 8 C 0.547 3.453 9 O -0.507 6.507 10 O -0.315 6.315 11 C 0.073 3.927 12 H 0.105 0.895 13 C -0.165 4.165 14 C 0.510 3.490 15 O -0.519 6.519 16 N -0.595 5.595 17 C 0.072 3.928 18 C 0.246 3.754 19 C -0.530 4.530 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 S 0.232 5.768 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.197 0.803 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.036 0.964 43 H 0.047 0.953 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.003 4.658 11.521 27.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.089 4.089 4 C -0.221 4.221 5 N -0.193 5.193 6 C -0.025 4.025 7 C -0.420 4.420 8 C 0.390 3.610 9 O -0.397 6.397 10 O -0.230 6.230 11 C 0.014 3.986 12 H 0.123 0.877 13 C -0.222 4.222 14 C 0.294 3.706 15 O -0.395 6.395 16 N -0.329 5.329 17 C -0.072 4.072 18 C 0.127 3.873 19 C -0.569 4.569 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.206 1.206 25 H -0.210 1.210 26 H -0.199 1.199 27 S 0.491 5.509 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.214 0.786 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -25.465 4.403 11.737 28.384 hybrid contribution 1.587 0.722 -1.038 2.029 sum -23.879 5.125 10.699 26.663 Atomic orbital electron populations 1.21759 0.94661 1.02296 1.02162 1.21568 0.96533 0.94630 1.03247 1.20457 0.84247 0.99317 1.04881 1.27726 1.02205 1.00300 0.91835 1.66190 1.04890 1.16969 1.31271 1.22878 0.90947 0.93083 0.95584 1.24975 0.96067 1.22898 0.98031 1.19368 0.84562 0.72761 0.84278 1.90880 1.85667 1.46825 1.16360 1.86691 1.14733 1.83168 1.38375 1.22750 0.78601 0.99128 0.98092 0.87749 1.22185 1.02673 0.93467 1.03894 1.19710 0.82542 0.80288 0.88027 1.90703 1.74928 1.54784 1.19057 1.48068 1.14057 1.60607 1.10120 1.21871 1.02706 1.00193 0.82421 1.19380 0.86383 0.93748 0.87782 1.21422 1.17630 0.93741 1.24081 0.92325 1.24943 0.97249 0.95678 0.96217 1.69931 1.33538 1.16813 1.32894 0.86477 0.80240 0.81971 0.78625 1.20606 1.21047 1.19862 1.83973 0.93875 1.64028 1.09054 0.92278 0.92160 0.92441 0.90897 0.91496 0.89189 0.88148 0.78601 0.90523 0.91244 0.89298 0.93384 0.90003 0.92169 0.94591 0.93541 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 3 C -0.05 -0.28 5.79 -27.88 -0.16 -0.44 16 4 C 0.05 0.48 6.63 -13.31 -0.09 0.39 16 5 N -0.48 -5.54 10.50 -11.26 -0.12 -5.65 16 6 C 0.13 1.66 11.20 -18.48 -0.21 1.45 16 7 C -0.30 -3.83 6.51 -36.79 -0.24 -4.07 16 8 C 0.55 8.34 7.90 34.06 0.27 8.61 16 9 O -0.51 -8.21 16.23 -19.35 -0.31 -8.53 16 10 O -0.31 -5.35 9.26 -47.54 -0.44 -5.79 16 11 C 0.07 1.23 2.15 -27.88 -0.06 1.17 16 12 H 0.10 1.60 6.40 -51.93 -0.33 1.27 16 13 C -0.16 -2.35 9.29 37.16 0.35 -2.00 16 14 C 0.51 10.92 6.97 -10.98 -0.08 10.84 16 15 O -0.52 -13.37 16.12 -13.62 -0.22 -13.59 16 16 N -0.59 -12.60 2.86 -182.95 -0.52 -13.13 16 17 C 0.07 1.13 9.85 59.85 0.59 1.72 16 18 C 0.25 6.38 5.17 -5.19 -0.03 6.35 16 19 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 20 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 23 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 27 S 0.23 2.22 23.00 -107.50 -2.47 -0.25 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.20 2.33 8.06 -52.49 -0.42 1.91 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.15 6.02 -51.93 -0.31 0.84 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 41 H 0.06 0.78 4.70 -51.93 -0.24 0.54 16 42 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 43 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 390.42 15.07 5.88 5.88 Total: -1.00 -34.63 390.42 -8.66 -43.29 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -6.30 Total: -2.74 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 0.13 Total: 9.48 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.10 Total: -44.38 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.97 Total: -27.90 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.47 Total: -0.25 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.63 -8.66 -43.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745264189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.911 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds