Wall clock time and date at job start Sat Apr 11 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46968 * 2 1 4 4 C 1.50697 * 109.46800 * 180.02562 * 3 2 1 5 5 N 1.29393 * 124.70715 * 90.02781 * 4 3 2 6 6 C 1.30912 * 117.46730 * 179.97438 * 5 4 3 7 7 C 1.36756 * 113.93692 * 359.97438 * 6 5 4 8 8 C 1.46499 * 126.18281 * 179.97438 * 7 6 5 9 9 O 1.21607 * 119.99983 * 180.02562 * 8 7 6 10 10 O 1.34879 * 119.99858 * 0.03327 * 8 7 6 11 11 C 1.45202 * 116.99785 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47306 * 29.99811 * 11 10 8 13 13 C 1.52997 * 109.47156 * 269.99455 * 11 10 8 14 14 C 1.50705 * 109.46993 * 149.99640 * 11 10 8 15 15 O 1.21288 * 119.99736 * 14.97312 * 14 11 10 16 16 N 1.34775 * 120.00071 * 194.97460 * 14 11 10 17 17 C 1.46497 * 119.99963 * 4.86988 * 16 14 11 18 18 C 1.46501 * 119.99706 * 184.87809 * 16 14 11 19 19 C 1.50702 * 109.47099 * 90.00044 * 18 16 14 20 20 H 1.08001 * 120.00233 * 359.97438 * 19 18 16 21 21 C 1.37876 * 119.99731 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00060 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46733 * 89.99753 * 23 21 19 25 25 H 1.48497 * 109.47032 * 209.99282 * 23 21 19 26 26 H 1.48497 * 109.46929 * 330.00040 * 23 21 19 27 27 S 1.70930 * 124.70721 * 270.27804 * 4 3 2 28 28 H 1.08994 * 109.47554 * 59.99762 * 1 2 3 29 29 H 1.09004 * 109.46886 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46675 * 299.99275 * 1 2 3 31 31 H 1.09001 * 109.46393 * 240.00330 * 2 1 3 32 32 H 1.08995 * 109.47326 * 120.00730 * 2 1 3 33 33 H 1.08997 * 109.46830 * 60.00820 * 3 2 1 34 34 H 1.08994 * 109.47177 * 300.00469 * 3 2 1 35 35 H 1.07999 * 123.03299 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.46888 * 296.95702 * 13 11 10 37 37 H 1.08995 * 109.46828 * 56.95480 * 13 11 10 38 38 H 1.09000 * 109.47290 * 176.95845 * 13 11 10 39 39 H 1.09005 * 109.46906 * 84.70121 * 17 16 14 40 40 H 1.09001 * 109.47437 * 204.70010 * 17 16 14 41 41 H 1.08999 * 109.47366 * 324.70337 * 17 16 14 42 42 H 1.09007 * 109.46581 * 209.99402 * 18 16 14 43 43 H 1.08996 * 109.47020 * 329.99272 * 18 16 14 44 44 H 0.96999 * 119.99900 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.2833 1.4431 -1.0647 6 6 5.5820 1.4435 -0.9002 7 6 5.9755 1.4437 0.4095 8 6 7.3568 1.4436 0.8976 9 8 7.5792 1.4433 2.0932 10 8 8.3818 1.4439 0.0209 11 6 9.7237 1.4444 0.5757 12 1 9.7196 0.9306 1.5370 13 6 10.1945 2.8870 0.7705 14 6 10.6583 0.7342 -0.3695 15 8 10.3139 0.5141 -1.5114 16 7 11.8766 0.3437 0.0542 17 6 12.2523 0.5130 1.4600 18 6 12.8253 -0.2501 -0.8913 19 6 13.6663 0.8374 -1.5086 20 1 13.5096 1.8678 -1.2254 21 6 14.6352 0.5170 -2.4358 22 7 14.8257 -0.7377 -2.7810 23 14 15.6773 1.8649 -3.2016 24 1 16.8919 2.0814 -2.3751 25 1 16.0776 1.4619 -4.5736 26 1 14.8909 3.1230 -3.2647 27 16 4.5208 1.4354 1.4041 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 6.2798 1.4436 -1.7245 36 1 10.2504 3.3848 -0.1976 37 1 9.4889 3.4161 1.4109 38 1 11.1798 2.8879 1.2368 39 1 11.8890 -0.3367 2.0380 40 1 13.3378 0.5705 1.5416 41 1 11.8098 1.4312 1.8463 42 1 13.4704 -0.9537 -0.3650 43 1 12.2777 -0.7747 -1.6742 44 1 15.5076 -0.9631 -3.4330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745264189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:16 Heat of formation + Delta-G solvation = -101.058923 kcal Electronic energy + Delta-G solvation = -26526.588460 eV Core-core repulsion = 22570.330640 eV Total energy + Delta-G solvation = -3956.257820 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.00538 -40.95553 -40.40146 -37.73302 -36.71052 -36.15905 -34.87821 -33.29614 -31.89742 -29.72964 -29.22887 -27.61784 -26.15417 -25.65082 -24.67841 -23.27199 -22.54927 -21.17130 -20.50100 -19.23056 -18.90363 -18.70149 -18.06730 -17.54478 -17.40347 -16.90351 -16.31266 -16.17497 -16.09053 -15.75690 -15.33540 -15.15875 -14.91423 -14.76065 -14.35738 -14.12756 -13.92047 -13.67220 -13.59324 -13.36086 -13.13611 -13.02313 -12.91481 -12.78609 -12.67843 -12.64961 -12.48974 -12.22423 -12.16493 -12.14622 -12.04014 -11.72807 -11.62878 -10.81940 -10.71884 -10.67818 -10.64932 -10.06431 -9.54377 -8.23867 -6.38702 -1.09327 -0.18440 0.42797 0.99372 1.29264 1.37167 1.40353 1.49576 1.56895 1.73445 2.29685 2.41813 2.89830 3.06371 3.34044 3.45077 3.71514 3.73753 3.77803 3.97935 4.05065 4.09932 4.22936 4.50321 4.51291 4.54764 4.63288 4.66849 4.78586 4.82976 4.88094 4.91211 4.93564 5.07228 5.08376 5.19643 5.23269 5.27215 5.45090 5.50128 5.76637 6.02002 6.29685 6.44095 6.56713 6.70123 7.16729 7.34291 8.83699 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.022460 B = 0.002121 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.352277 B =13201.069251 C =13700.439824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.050 4.050 4 C 0.066 3.934 5 N -0.504 5.504 6 C 0.137 3.863 7 C -0.334 4.334 8 C 0.550 3.450 9 O -0.520 6.520 10 O -0.333 6.333 11 C 0.083 3.917 12 H 0.125 0.875 13 C -0.159 4.159 14 C 0.502 3.498 15 O -0.577 6.577 16 N -0.599 5.599 17 C 0.065 3.935 18 C 0.259 3.741 19 C -0.544 4.544 20 H 0.059 0.941 21 C 0.007 3.993 22 N -0.928 5.928 23 Si 0.969 3.031 24 H -0.262 1.262 25 H -0.283 1.283 26 H -0.271 1.271 27 S 0.277 5.723 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.190 0.810 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.031 0.969 43 H 0.000 1.000 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.363 6.368 13.549 30.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.090 4.090 4 C -0.207 4.207 5 N -0.219 5.219 6 C -0.023 4.023 7 C -0.456 4.456 8 C 0.395 3.605 9 O -0.411 6.411 10 O -0.249 6.249 11 C 0.024 3.976 12 H 0.142 0.858 13 C -0.216 4.216 14 C 0.288 3.712 15 O -0.456 6.456 16 N -0.331 5.331 17 C -0.077 4.077 18 C 0.138 3.862 19 C -0.583 4.583 20 H 0.077 0.923 21 C -0.192 4.192 22 N -0.567 5.567 23 Si 0.794 3.206 24 H -0.187 1.187 25 H -0.208 1.208 26 H -0.196 1.196 27 S 0.537 5.463 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.137 0.863 34 H 0.125 0.875 35 H 0.206 0.794 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.049 0.951 43 H 0.018 0.982 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -26.833 6.122 13.839 30.806 hybrid contribution 1.866 0.124 -1.644 2.490 sum -24.967 6.246 12.196 28.479 Atomic orbital electron populations 1.21743 0.93343 1.02601 1.02916 1.21558 0.97616 0.94085 1.02590 1.20720 0.81730 0.99951 1.06641 1.28401 1.03577 0.97391 0.91324 1.66258 1.04574 1.18630 1.32426 1.22860 0.91487 0.92504 0.95483 1.24991 0.96053 1.25363 0.99156 1.19624 0.84833 0.72115 0.83956 1.90853 1.85848 1.47799 1.16551 1.86693 1.15136 1.83565 1.39468 1.22637 0.77953 1.00199 0.96782 0.85751 1.22197 1.04093 0.91509 1.03796 1.20560 0.82929 0.79558 0.88121 1.90666 1.76182 1.56984 1.21782 1.48049 1.13468 1.59871 1.11689 1.22202 1.03218 1.02974 0.79300 1.18879 0.86329 0.93328 0.87684 1.21700 1.17981 0.94025 1.24567 0.92287 1.25878 0.98595 0.98091 0.96634 1.70054 1.34292 1.18878 1.33510 0.85386 0.78808 0.78689 0.77758 1.18712 1.20843 1.19616 1.83759 0.91549 1.63068 1.07896 0.92073 0.92135 0.91146 0.92586 0.91225 0.86288 0.87507 0.79360 0.91913 0.88957 0.87674 0.90878 0.89987 0.88919 0.95104 0.98199 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 71.98 0.71 -0.15 16 2 C -0.12 -1.07 5.92 30.60 0.18 -0.88 16 3 C -0.05 -0.45 5.79 29.85 0.17 -0.28 16 4 C 0.07 1.09 6.63 88.47 0.59 1.67 16 5 N -0.50 -11.41 10.50 -189.53 -1.99 -13.40 16 6 C 0.14 3.45 11.20 84.48 0.95 4.39 16 7 C -0.33 -8.47 6.51 24.08 0.16 -8.31 16 8 C 0.55 16.54 7.90 69.97 0.55 17.10 16 9 O -0.52 -16.10 16.23 19.49 0.32 -15.79 16 10 O -0.33 -11.44 9.26 -51.67 -0.48 -11.92 16 11 C 0.08 2.72 2.15 29.85 0.06 2.79 16 12 H 0.12 3.58 6.40 -2.39 -0.02 3.57 16 13 C -0.16 -4.25 9.29 71.98 0.67 -3.58 16 14 C 0.50 21.97 6.97 87.66 0.61 22.58 16 15 O -0.58 -31.30 16.12 15.28 0.25 -31.05 16 16 N -0.60 -25.66 2.86 -851.11 -2.43 -28.09 16 17 C 0.06 1.91 9.85 127.77 1.26 3.17 16 18 C 0.26 13.96 5.17 85.63 0.44 14.40 16 19 C -0.54 -31.00 9.39 25.60 0.24 -30.76 16 20 H 0.06 3.28 7.81 -2.91 -0.02 3.25 16 21 C 0.01 0.41 5.46 84.65 0.46 0.87 16 22 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 23 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 S 0.28 4.82 23.00 -56.49 -1.30 3.52 16 28 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.19 4.81 8.06 -2.91 -0.02 4.79 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.10 2.43 6.02 -2.39 -0.01 2.42 16 39 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.08 2.45 8.03 -2.39 -0.02 2.43 16 41 H 0.09 2.14 4.70 -2.39 -0.01 2.13 16 42 H 0.03 1.67 8.07 -2.38 -0.02 1.65 16 43 H 0.00 -0.01 7.36 -2.39 -0.02 -0.03 16 44 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -78.11 390.42 4.74 -73.36 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.01 Total: 9.48 kcal Atomic # 6 Polarization: 15.95 SS G_CDS: 7.06 Total: 23.01 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -4.14 Total: -97.18 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: 0.08 Total: -58.75 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.30 Total: 3.52 kcal Total: -78.11 4.74 -73.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745264189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.698 kcal (2) G-P(sol) polarization free energy of solvation -78.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds