Wall clock time and date at job start Sat Apr 11 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47326 * 2 1 4 4 C 1.53002 * 109.47138 * 120.00153 * 2 1 3 5 5 N 1.46501 * 109.47120 * 179.97438 * 4 2 1 6 6 N 1.40099 * 120.00030 * 179.97438 * 5 4 2 7 7 C 1.29804 * 120.00188 * 179.97438 * 6 5 4 8 8 C 1.47389 * 120.00246 * 180.02562 * 7 6 5 9 9 C 1.39796 * 120.08655 * 180.02562 * 8 7 6 10 10 C 1.37730 * 119.91121 * 180.02562 * 9 8 7 11 11 C 1.39069 * 120.08714 * 0.02562 * 10 9 8 12 12 O 1.35669 * 119.91350 * 179.97438 * 11 10 9 13 13 C 1.34806 * 116.99997 * 5.55029 * 12 11 10 14 14 H 1.08002 * 120.00092 * 354.94169 * 13 12 11 15 15 C 1.38623 * 120.00304 * 174.94479 * 13 12 11 16 16 N 1.31574 * 119.99530 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00071 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47617 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47166 * 120.00089 * 17 15 13 20 20 H 1.48496 * 109.47210 * 239.99764 * 17 15 13 21 21 C 1.39073 * 120.17479 * 0.23730 * 11 10 9 22 22 C 1.37732 * 120.08276 * 359.48636 * 21 11 10 23 23 S 1.81401 * 109.46803 * 239.99685 * 2 1 3 24 24 C 1.81402 * 101.91797 * 60.00303 * 23 2 1 25 25 O 1.42100 * 108.57759 * 174.48307 * 23 2 1 26 26 O 1.42097 * 108.58036 * 305.51716 * 23 2 1 27 27 H 1.08998 * 109.46627 * 300.00229 * 1 2 3 28 28 H 1.08994 * 109.46873 * 59.99784 * 1 2 3 29 29 H 1.08994 * 109.47172 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46851 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47132 * 300.00232 * 3 2 1 32 32 H 1.08998 * 109.47455 * 60.00277 * 3 2 1 33 33 H 1.09009 * 109.46823 * 59.99575 * 4 2 1 34 34 H 1.09003 * 109.46877 * 300.00072 * 4 2 1 35 35 H 0.97003 * 119.99489 * 359.97438 * 5 4 2 36 36 H 1.08001 * 119.99763 * 0.02562 * 7 6 5 37 37 H 1.07997 * 120.04123 * 359.97438 * 9 8 7 38 38 H 1.07998 * 119.95969 * 179.97438 * 10 9 8 39 39 H 0.97006 * 119.99830 * 180.02562 * 16 15 13 40 40 H 1.07997 * 119.95720 * 179.73966 * 21 11 10 41 41 H 1.08005 * 120.04265 * 180.23014 * 22 21 11 42 42 H 1.08997 * 109.47312 * 60.00409 * 24 23 2 43 43 H 1.09005 * 109.47414 * 179.97438 * 24 23 2 44 44 H 1.08999 * 109.47374 * 299.99717 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5051 -0.7218 1.2489 6 7 4.2056 -1.3281 2.2999 7 6 5.5036 -1.3290 2.2994 8 6 6.2406 -1.9674 3.4047 9 6 7.6386 -1.9689 3.4062 10 6 8.3236 -2.5670 4.4407 11 6 7.6264 -3.1692 5.4824 12 8 8.3047 -3.7577 6.4994 13 6 9.6461 -3.6237 6.4986 14 1 10.1399 -3.1383 5.6697 15 6 10.3918 -4.1089 7.5617 16 7 9.7902 -4.6998 8.5717 17 14 12.2504 -3.9226 7.5609 18 1 12.6778 -3.2273 6.3204 19 1 12.6687 -3.1279 8.7436 20 1 12.8825 -5.2651 7.6181 21 6 6.2357 -3.1745 5.4818 22 6 5.5434 -2.5736 4.4538 23 16 2.1346 -0.8552 -1.4811 24 6 1.4228 0.1515 -2.8118 25 8 3.5496 -0.7331 -1.5285 26 8 1.5478 -2.1485 -1.5284 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6769 1.9563 0.8900 33 1 1.6766 -1.7490 1.2492 34 1 1.6767 -0.2074 2.1392 35 1 3.9900 -0.3024 0.5210 36 1 6.0436 -0.8620 1.4890 37 1 8.1806 -1.5026 2.5969 38 1 9.4036 -2.5690 4.4424 39 1 10.3119 -5.0391 9.3158 40 1 5.6978 -3.6469 6.2905 41 1 4.4634 -2.5749 4.4559 42 1 1.7894 1.1746 -2.7292 43 1 1.7158 -0.2622 -3.7768 44 1 0.3360 0.1471 -2.7291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774488166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:33 Heat of formation + Delta-G solvation = -51.961080 kcal Electronic energy + Delta-G solvation = -26318.021210 eV Core-core repulsion = 22363.892432 eV Total energy + Delta-G solvation = -3954.128778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.74279 -39.03549 -38.33125 -38.13503 -37.12104 -36.50741 -34.32016 -32.85962 -31.86063 -30.61470 -29.61609 -28.40521 -27.48902 -26.11463 -23.94284 -23.33346 -22.77511 -21.42051 -19.85751 -19.57836 -18.88085 -17.95963 -17.79420 -17.35244 -16.89783 -16.73742 -16.28258 -16.03236 -15.73721 -15.53942 -15.30687 -15.01323 -14.95196 -14.43596 -14.24010 -14.09080 -14.00562 -13.92158 -13.80776 -13.52619 -13.43513 -13.23540 -13.12861 -12.92441 -12.82051 -12.65398 -12.39590 -12.37502 -12.33287 -12.15826 -12.06748 -11.95067 -11.24891 -11.12012 -10.89503 -10.81388 -9.80691 -9.58561 -8.46911 -8.35128 -6.13165 -1.06193 0.20531 0.64289 1.37958 1.43174 1.56553 1.68241 1.74158 1.89761 2.19221 2.60128 2.90774 2.95368 3.24309 3.29343 3.50146 3.52532 3.82836 3.94217 4.04174 4.09254 4.16804 4.20927 4.38720 4.46916 4.56317 4.61327 4.65066 4.67702 4.72456 4.74583 4.77728 4.93326 5.02189 5.07188 5.20015 5.25937 5.28245 5.33012 5.61219 5.69397 5.81383 6.03610 6.15996 6.18655 6.97968 7.47761 7.77465 8.76497 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031874 B = 0.001796 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.248532 B =15582.135108 C =15890.022902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.528 4.528 3 C -0.145 4.145 4 C 0.168 3.832 5 N -0.682 5.682 6 N -0.261 5.261 7 C 0.091 3.909 8 C -0.129 4.129 9 C -0.037 4.037 10 C -0.241 4.241 11 C 0.126 3.874 12 O -0.227 6.227 13 C -0.412 4.412 14 H 0.108 0.892 15 C -0.024 4.024 16 N -0.920 5.920 17 Si 1.021 2.979 18 H -0.248 1.248 19 H -0.269 1.269 20 H -0.270 1.270 21 C -0.207 4.207 22 C -0.037 4.037 23 S 2.394 3.606 24 C -0.636 4.636 25 O -0.979 6.979 26 O -0.984 6.984 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.388 0.612 36 H 0.127 0.873 37 H 0.154 0.846 38 H 0.129 0.871 39 H 0.273 0.727 40 H 0.115 0.885 41 H 0.138 0.862 42 H 0.162 0.838 43 H 0.140 0.860 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.750 17.275 -24.446 35.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.621 4.621 3 C -0.203 4.203 4 C 0.043 3.957 5 N -0.426 5.426 6 N -0.069 5.069 7 C -0.120 4.120 8 C -0.132 4.132 9 C -0.058 4.058 10 C -0.260 4.260 11 C 0.074 3.926 12 O -0.132 6.132 13 C -0.488 4.488 14 H 0.125 0.875 15 C -0.222 4.222 16 N -0.557 5.557 17 Si 0.840 3.160 18 H -0.171 1.171 19 H -0.194 1.194 20 H -0.195 1.195 21 C -0.227 4.227 22 C -0.058 4.058 23 S 2.582 3.418 24 C -0.789 4.789 25 O -0.976 6.976 26 O -0.981 6.981 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.230 0.770 36 H 0.144 0.856 37 H 0.171 0.829 38 H 0.147 0.853 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.155 0.845 42 H 0.180 0.820 43 H 0.158 0.842 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -20.279 15.983 -23.645 35.011 hybrid contribution 1.262 0.508 -0.089 1.364 sum -19.017 16.492 -23.734 34.596 Atomic orbital electron populations 1.21937 0.86078 1.04943 1.07264 1.29827 1.08760 1.09253 1.14255 1.21958 1.01677 0.89716 1.06948 1.20910 0.78097 0.99701 0.96999 1.48323 1.04825 1.65863 1.23608 1.74009 1.09983 1.11545 1.11326 1.23843 0.90414 1.00017 0.97689 1.18182 0.92547 1.06367 0.96074 1.21140 0.92569 0.95325 0.96748 1.21183 1.00794 1.07212 0.96851 1.20044 0.92666 0.91364 0.88546 1.83924 1.21630 1.65070 1.42581 1.21941 0.78874 1.40426 1.07603 0.87523 1.26643 1.06252 0.95546 0.93759 1.70208 1.38604 1.37764 1.09170 0.84491 0.73303 0.78697 0.79484 1.17137 1.19430 1.19509 1.20340 0.90828 1.08905 1.02597 1.21013 0.99727 0.93632 0.91386 1.08533 0.75680 0.77411 0.80218 1.30149 1.15791 1.16632 1.16353 1.93486 1.29994 1.87685 1.86430 1.93539 1.79631 1.38273 1.86643 0.88404 0.87095 0.90894 0.92064 0.87158 0.88955 0.92418 0.89321 0.77035 0.85634 0.82859 0.85292 0.91812 0.86701 0.84465 0.81985 0.84179 0.81904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.50 8.22 71.98 0.59 0.10 16 2 C -0.53 -5.06 0.62 -10.79 -0.01 -5.06 16 3 C -0.15 -0.77 8.05 71.98 0.58 -0.19 16 4 C 0.17 3.07 5.56 86.38 0.48 3.55 16 5 N -0.68 -16.97 5.94 -187.47 -1.11 -18.08 16 6 N -0.26 -8.06 10.61 -52.21 -0.55 -8.61 16 7 C 0.09 2.78 10.75 87.40 0.94 3.72 16 8 C -0.13 -4.54 5.87 -20.11 -0.12 -4.66 16 9 C -0.04 -1.32 9.78 22.53 0.22 -1.10 16 10 C -0.24 -10.49 9.15 22.35 0.20 -10.28 16 11 C 0.13 6.38 6.65 22.67 0.15 6.53 16 12 O -0.23 -13.73 9.75 -21.61 -0.21 -13.94 16 13 C -0.41 -23.93 9.48 67.91 0.64 -23.29 16 14 H 0.11 5.61 5.19 -2.91 -0.02 5.60 16 15 C -0.02 -1.39 5.49 84.82 0.47 -0.92 16 16 N -0.92 -56.65 13.67 21.61 0.30 -56.36 16 17 Si 1.02 42.76 29.55 68.60 2.03 44.79 16 18 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 21 C -0.21 -9.33 9.97 22.35 0.22 -9.11 16 22 C -0.04 -1.43 9.57 22.53 0.22 -1.22 16 23 S 2.39 34.14 4.28 -56.49 -0.24 33.90 16 24 C -0.64 -1.09 9.72 113.37 1.10 0.01 16 25 O -0.98 -21.59 15.63 -127.37 -1.99 -23.58 16 26 O -0.98 -23.06 17.91 -127.37 -2.28 -25.34 16 27 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.11 -0.44 6.55 -2.39 -0.02 -0.45 16 29 H 0.07 0.43 8.06 -2.39 -0.02 0.41 16 30 H 0.06 0.55 6.78 -2.39 -0.02 0.53 16 31 H 0.11 -0.30 6.56 -2.39 -0.02 -0.31 16 32 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.39 9.07 5.10 -213.32 -1.09 7.98 16 36 H 0.13 3.22 8.02 -2.91 -0.02 3.20 16 37 H 0.15 4.12 8.06 -2.91 -0.02 4.09 16 38 H 0.13 5.55 5.62 -2.91 -0.02 5.53 16 39 H 0.27 15.35 8.31 -92.70 -0.77 14.57 16 40 H 0.11 5.10 8.06 -2.91 -0.02 5.08 16 41 H 0.14 4.77 7.55 -2.91 -0.02 4.75 16 42 H 0.16 -0.63 6.87 -2.39 -0.02 -0.64 16 43 H 0.14 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.16 -0.66 6.87 -2.39 -0.02 -0.68 16 Total: -1.00 -86.81 375.84 1.56 -85.24 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -0.06 Total: 23.89 kcal Atomic # 6 Polarization: -47.61 SS G_CDS: 5.69 Total: -41.91 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -1.37 Total: -83.05 kcal Atomic # 8 Polarization: -58.38 SS G_CDS: -4.48 Total: -62.86 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 34.14 SS G_CDS: -0.24 Total: 33.90 kcal Total: -86.81 1.56 -85.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774488166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.280 kcal (2) G-P(sol) polarization free energy of solvation -86.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds