Wall clock time and date at job start Sat Apr 11 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46933 * 2 1 4 4 C 1.52998 * 109.47551 * 119.99582 * 2 1 3 5 5 N 1.46498 * 109.47720 * 174.80268 * 4 2 1 6 6 C 1.46501 * 119.99712 * 275.54956 * 5 4 2 7 7 C 1.50701 * 109.46549 * 278.58869 * 6 5 4 8 8 H 1.07997 * 120.00618 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99914 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99619 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00217 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47514 * 89.99631 * 11 9 7 13 13 H 1.48500 * 109.47163 * 209.99732 * 11 9 7 14 14 H 1.48505 * 109.46804 * 329.99541 * 11 9 7 15 15 C 1.34770 * 120.00150 * 95.53790 * 5 4 2 16 16 O 1.21547 * 120.00258 * 6.05688 * 15 5 4 17 17 C 1.47846 * 120.00013 * 186.04763 * 15 5 4 18 18 C 1.39585 * 120.14165 * 150.06348 * 17 15 5 19 19 C 1.37957 * 119.85132 * 180.02562 * 18 17 15 20 20 C 1.38364 * 120.14418 * 0.02562 * 19 18 17 21 21 S 1.76204 * 119.85103 * 179.97438 * 20 19 18 22 22 N 1.65603 * 107.21544 * 89.99816 * 21 20 19 23 23 O 1.42094 * 106.39990 * 203.53779 * 21 20 19 24 24 O 1.42097 * 106.40179 * 336.46048 * 21 20 19 25 25 C 1.38357 * 120.29475 * 0.23022 * 20 19 18 26 26 C 1.37958 * 120.14196 * 359.49179 * 25 20 19 27 27 H 1.08993 * 109.47061 * 299.99902 * 1 2 3 28 28 H 1.09001 * 109.47265 * 60.00615 * 1 2 3 29 29 H 1.08998 * 109.46684 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47651 * 239.99830 * 2 1 3 31 31 H 1.08995 * 109.47401 * 65.94653 * 3 2 1 32 32 H 1.08998 * 109.47190 * 185.94850 * 3 2 1 33 33 H 1.09005 * 109.46813 * 305.94190 * 3 2 1 34 34 H 1.09001 * 109.46905 * 54.79746 * 4 2 1 35 35 H 1.09004 * 109.46968 * 294.80314 * 4 2 1 36 36 H 1.08994 * 109.47770 * 38.58800 * 6 5 4 37 37 H 1.08998 * 109.47113 * 158.59195 * 6 5 4 38 38 H 0.96997 * 119.99313 * 180.02562 * 10 9 7 39 39 H 1.08001 * 120.07385 * 0.02562 * 18 17 15 40 40 H 1.07998 * 119.92984 * 180.02562 * 19 18 17 41 41 H 0.96995 * 120.00390 * 269.99496 * 22 21 20 42 42 H 0.97001 * 120.00067 * 90.00244 * 22 21 20 43 43 H 1.07997 * 119.92976 * 179.74654 * 25 20 19 44 44 H 1.08007 * 120.07414 * 180.24700 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 1.2492 5 7 3.4997 -0.8305 1.1884 6 6 4.1215 -1.9353 0.4542 7 6 4.1326 -3.1695 1.3188 8 1 3.7177 -3.1346 2.3153 9 6 4.6726 -4.3434 0.8377 10 7 5.1774 -4.3861 -0.3760 11 14 4.6859 -5.8735 1.9091 12 1 3.4378 -6.6462 1.6843 13 1 5.8585 -6.7141 1.5572 14 1 4.7719 -5.4768 3.3375 15 6 4.2705 0.0854 1.8076 16 8 3.7587 0.9376 2.5070 17 6 5.7386 0.0535 1.6362 18 6 6.4778 1.2357 1.7019 19 6 7.8475 1.1990 1.5407 20 6 8.4884 -0.0061 1.3137 21 16 10.2380 -0.0439 1.1082 22 7 10.9035 -0.2529 2.6102 23 8 10.5300 -1.2237 0.3722 24 8 10.6195 1.2554 0.6775 25 6 7.7610 -1.1808 1.2422 26 6 6.3915 -1.1588 1.4074 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.7662 1.9247 0.9384 32 1 3.1247 1.4444 -0.1065 33 1 1.5923 1.9861 -0.8321 34 1 1.6027 -1.7184 1.2971 35 1 1.7548 -0.1563 2.1368 36 1 3.5529 -2.1333 -0.4544 37 1 5.1446 -1.6666 0.1913 38 1 5.5569 -5.2120 -0.7146 39 1 5.9787 2.1770 1.8786 40 1 8.4207 2.1129 1.5917 41 1 11.1285 0.5191 3.1526 42 1 11.0684 -1.1473 2.9474 43 1 8.2668 -2.1176 1.0607 44 1 5.8252 -2.0770 1.3553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792525575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:35 Heat of formation + Delta-G solvation = -75.846450 kcal Electronic energy + Delta-G solvation = -28255.804829 eV Core-core repulsion = 24300.640303 eV Total energy + Delta-G solvation = -3955.164526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.10163 -38.08607 -37.19497 -36.07028 -35.84034 -34.56235 -33.30603 -32.54017 -31.13619 -30.75591 -27.75447 -26.87626 -26.16474 -23.74320 -22.85183 -22.43432 -20.14374 -19.55643 -18.99428 -17.83714 -17.51084 -17.08914 -16.82278 -16.65789 -15.96735 -15.14641 -14.76881 -14.71733 -14.42700 -14.31958 -14.06352 -13.89391 -13.36512 -13.21718 -12.73058 -12.60353 -12.47199 -12.27130 -12.21647 -12.08990 -12.02822 -11.97977 -11.64025 -11.43132 -11.18434 -11.05740 -11.01809 -10.92509 -10.66614 -10.47690 -10.45158 -10.21696 -10.00623 -9.89184 -9.31003 -9.00623 -8.85967 -8.44204 -7.85082 -6.39063 -4.50271 0.42170 0.80485 1.62956 3.01875 3.11631 3.20540 3.22646 3.33182 3.69658 3.77630 4.07607 4.19198 4.37778 4.90338 5.03520 5.08430 5.13902 5.20696 5.25112 5.40885 5.62524 5.70481 5.83295 5.84468 5.91389 5.96337 5.98496 6.09574 6.19118 6.20468 6.27264 6.33265 6.36217 6.52949 6.56635 6.60413 6.70640 6.77944 6.97040 7.03708 7.20578 7.35998 7.55738 7.79814 8.15301 8.57745 8.79441 9.18627 10.65197 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009580 B = 0.004478 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.006398 B = 6251.834320 C = 8463.356875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.123 3.877 5 N -0.581 5.581 6 C 0.204 3.796 7 C -0.550 4.550 8 H 0.066 0.934 9 C 0.069 3.931 10 N -0.877 5.877 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.271 1.271 15 C 0.551 3.449 16 O -0.562 6.562 17 C -0.075 4.075 18 C -0.094 4.094 19 C -0.049 4.049 20 C -0.670 4.670 21 S 2.705 3.295 22 N -1.245 6.245 23 O -0.956 6.956 24 O -0.964 6.964 25 C -0.034 4.034 26 C -0.117 4.117 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.067 0.933 38 H 0.271 0.729 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.418 0.582 42 H 0.420 0.580 43 H 0.142 0.858 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 7.234 3.796 9.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.132 4.132 3 C -0.195 4.195 4 C -0.001 4.001 5 N -0.309 5.309 6 C 0.085 3.915 7 C -0.588 4.588 8 H 0.085 0.915 9 C -0.136 4.136 10 N -0.513 5.513 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.195 1.195 15 C 0.339 3.661 16 O -0.443 6.443 17 C -0.079 4.079 18 C -0.114 4.114 19 C -0.068 4.068 20 C -0.758 4.758 21 S 2.792 3.208 22 N -0.916 5.916 23 O -0.946 6.946 24 O -0.954 6.954 25 C -0.054 4.054 26 C -0.134 4.134 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.247 0.753 42 H 0.249 0.751 43 H 0.160 0.840 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.267 7.622 3.026 9.245 hybrid contribution -0.552 -1.072 1.140 1.659 sum 3.715 6.551 4.166 8.606 Atomic orbital electron populations 1.21740 0.95057 1.01674 1.01408 1.21495 0.95461 0.96768 0.99519 1.21756 1.00836 0.95733 1.01162 1.21437 0.80191 1.00910 0.97524 1.48058 1.05981 1.26179 1.50728 1.20357 0.95734 0.83114 0.92294 1.21432 1.41188 0.94490 1.01664 0.91533 1.25019 0.94513 0.98958 0.95144 1.69925 1.37484 1.28333 1.15573 0.86491 0.78068 0.82339 0.80731 1.20253 1.20693 1.19532 1.18230 0.86306 0.81440 0.80104 1.90681 1.74830 1.38689 1.40129 1.20415 0.94078 0.94604 0.98755 1.21252 0.93575 0.97954 0.98574 1.20670 0.94804 0.95947 0.95392 1.30997 1.26395 1.00220 1.18151 1.01467 0.73533 0.73336 0.72489 1.53366 1.80753 1.17269 1.40169 1.93618 1.83759 1.48878 1.68357 1.93582 1.82029 1.40385 1.79382 1.21018 0.94783 0.96345 0.93204 1.23697 0.95231 1.01887 0.92618 0.92811 0.92885 0.92556 0.90915 0.92429 0.93243 0.93585 0.90196 0.90489 0.94576 0.91620 0.91907 0.84800 0.84439 0.75340 0.75117 0.83999 0.77273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 2 C -0.11 -1.75 3.12 -90.62 -0.28 -2.03 16 3 C -0.14 -2.12 8.21 37.16 0.30 -1.82 16 4 C 0.12 2.18 4.97 -4.04 -0.02 2.16 16 5 N -0.58 -11.73 2.28 -176.18 -0.40 -12.13 16 6 C 0.20 4.55 4.67 -5.19 -0.02 4.52 16 7 C -0.55 -13.11 7.48 -34.44 -0.26 -13.36 16 8 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.07 1.68 5.34 -17.82 -0.10 1.59 16 10 N -0.88 -22.25 13.29 55.43 0.74 -21.51 16 11 Si 0.90 19.11 29.54 -169.99 -5.02 14.09 16 12 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 15 C 0.55 11.30 6.12 -12.33 -0.08 11.23 16 16 O -0.56 -12.15 15.67 5.32 0.08 -12.07 16 17 C -0.08 -1.44 5.58 -104.96 -0.59 -2.03 16 18 C -0.09 -1.55 9.60 -39.18 -0.38 -1.93 16 19 C -0.05 -0.71 9.50 -39.64 -0.38 -1.09 16 20 C -0.67 -9.97 5.98 -39.49 -0.24 -10.20 16 21 S 2.70 34.00 6.28 -107.50 -0.68 33.33 16 22 N -1.24 -9.90 9.52 60.35 0.57 -9.33 16 23 O -0.96 -15.17 17.26 -57.17 -0.99 -16.16 16 24 O -0.96 -14.11 17.27 -57.17 -0.99 -15.10 16 25 C -0.03 -0.59 9.50 -39.64 -0.38 -0.96 16 26 C -0.12 -2.28 7.48 -39.19 -0.29 -2.57 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.20 7.99 -51.93 -0.41 0.79 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.85 7.04 -51.93 -0.37 0.48 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 35 H 0.08 1.39 7.20 -51.93 -0.37 1.01 16 36 H 0.04 0.85 7.98 -51.93 -0.41 0.44 16 37 H 0.07 1.51 4.06 -51.97 -0.21 1.30 16 38 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 39 H 0.13 2.04 7.92 -52.49 -0.42 1.62 16 40 H 0.14 1.62 7.60 -52.49 -0.40 1.22 16 41 H 0.42 2.38 8.96 -34.47 -0.31 2.08 16 42 H 0.42 2.66 8.96 -34.47 -0.31 2.35 16 43 H 0.14 2.30 7.60 -52.49 -0.40 1.90 16 44 H 0.21 4.59 3.07 -52.48 -0.16 4.43 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -30.96 372.49 -9.27 -40.23 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -5.85 Total: 10.96 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -2.35 Total: -17.93 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.91 Total: -42.97 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -1.89 Total: -43.32 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Atomic # 16 Polarization: 34.00 SS G_CDS: -0.68 Total: 33.33 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.96 -9.27 -40.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792525575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.618 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds