Wall clock time and date at job start Sat Apr 11 2020 05:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.52996 * 109.47518 * 239.99457 * 2 1 3 5 5 C 1.50699 * 109.46861 * 59.99964 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99569 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47198 * 59.99782 * 9 7 5 11 11 H 1.48506 * 109.46650 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47066 * 299.99491 * 9 7 5 13 13 C 1.53002 * 109.46911 * 119.99531 * 2 1 3 14 14 N 1.46506 * 109.47035 * 300.00027 * 13 2 1 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 2 16 16 O 1.21695 * 119.99811 * 0.02562 * 15 14 13 17 17 C 1.46676 * 119.99963 * 180.02562 * 15 14 13 18 18 C 1.35661 * 126.13287 * 359.69444 * 17 15 14 19 19 N 1.30945 * 114.19286 * 179.78176 * 18 17 15 20 20 C 1.29426 * 117.36339 * 0.52845 * 19 18 17 21 21 C 1.50703 * 124.80401 * 179.68620 * 20 19 18 22 22 O 1.43753 * 109.63120 * 149.39029 * 21 20 19 23 23 C 1.44788 * 104.81297 * 215.80816 * 22 21 20 24 24 C 1.54910 * 101.72222 * 36.09946 * 23 22 21 25 25 O 1.43355 * 109.63316 * 30.02124 * 21 20 19 26 26 S 1.70957 * 110.39172 * 359.70440 * 20 19 18 27 27 H 1.09002 * 109.47398 * 300.00496 * 1 2 3 28 28 H 1.09001 * 109.47194 * 60.00677 * 1 2 3 29 29 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47086 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46652 * 299.99655 * 3 2 1 32 32 H 1.08992 * 109.47514 * 59.99566 * 3 2 1 33 33 H 1.08992 * 109.47534 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47134 * 300.00498 * 4 2 1 35 35 H 0.97002 * 119.99797 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.46930 * 180.02562 * 13 2 1 37 37 H 1.09000 * 109.47312 * 60.00201 * 13 2 1 38 38 H 0.96999 * 120.00080 * 0.02562 * 14 13 2 39 39 H 1.08007 * 122.90055 * 359.96547 * 18 17 15 40 40 H 1.09003 * 109.62505 * 269.62615 * 21 20 19 41 41 H 1.09008 * 110.97277 * 277.99163 * 23 22 21 42 42 H 1.08994 * 110.97412 * 154.21123 * 23 22 21 43 43 H 1.08996 * 110.69522 * 206.04609 * 24 23 22 44 44 H 1.09005 * 110.84230 * 82.90628 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9165 0.8668 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5517 -3.8525 9 14 1.2484 0.3985 -5.2572 10 1 1.7443 1.7981 -5.2573 11 1 1.7434 -0.3018 -6.4696 12 1 -0.2366 0.3995 -5.2572 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0304 2.4455 15 6 1.8767 -0.4911 3.6696 16 8 2.5763 -1.4805 3.7813 17 6 1.3873 0.2001 4.8671 18 6 0.6089 1.3110 4.8876 19 7 0.3041 1.7307 6.0900 20 6 0.7772 1.0611 7.0914 21 6 0.5388 1.3978 8.5409 22 8 0.5463 0.1926 9.3243 23 6 -0.4516 0.4117 10.3502 24 6 -1.5239 1.2206 9.5786 25 8 -0.7380 2.0337 8.6839 26 16 1.7112 -0.2592 6.5373 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 -0.7209 -1.2493 34 1 1.6767 -1.7489 -1.2491 35 1 2.8610 -1.8832 -4.7335 36 1 3.1300 -0.7208 1.2496 37 1 1.6767 -1.7488 1.2494 38 1 0.9936 0.7580 2.3564 39 1 0.2674 1.8047 3.9897 40 1 1.3230 2.0670 8.8950 41 1 -0.0416 0.9946 11.1751 42 1 -0.8583 -0.5344 10.7073 43 1 -2.1001 1.8454 10.2610 44 1 -2.1817 0.5565 9.0179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807847017.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:47 Heat of formation + Delta-G solvation = -106.560865 kcal Electronic energy + Delta-G solvation = -26584.293171 eV Core-core repulsion = 22627.796768 eV Total energy + Delta-G solvation = -3956.496403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71313 -41.21172 -40.20082 -38.64241 -36.21220 -35.34977 -34.09475 -32.79929 -30.83924 -29.08978 -28.29055 -27.96172 -27.23862 -25.07200 -24.74753 -24.33910 -22.77162 -20.88632 -20.19998 -19.39340 -18.52668 -18.34814 -18.31861 -17.66515 -16.83671 -16.78196 -16.57594 -16.40127 -16.01675 -15.60986 -15.41078 -15.07680 -14.89935 -14.77527 -14.66783 -14.33144 -14.28111 -13.92970 -13.86631 -13.78178 -12.84528 -12.76313 -12.65376 -12.59536 -12.53371 -12.32168 -12.22613 -12.00774 -11.76360 -11.54279 -11.35303 -11.20335 -10.97565 -10.86775 -10.70981 -10.60994 -10.49560 -10.27332 -10.06292 -8.12961 -6.20526 -0.99358 -0.07692 0.52606 1.24034 1.43512 1.45374 1.52495 2.00518 2.10429 2.12508 2.45617 2.66340 3.21446 3.28864 3.54531 3.64265 3.74668 3.93250 4.03261 4.06539 4.06937 4.12924 4.17207 4.21558 4.60352 4.66876 4.70586 4.73707 4.75388 4.81910 4.90969 4.95837 5.06650 5.13007 5.30223 5.43842 5.51533 5.53325 5.57136 5.80540 5.81582 5.90721 6.29135 6.36309 6.43026 6.94331 7.00660 7.46957 8.99162 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.031901 B = 0.001973 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.517152 B =14186.743347 C =14705.122385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.124 4.124 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.073 0.927 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.292 1.292 12 H -0.267 1.267 13 C 0.142 3.858 14 N -0.692 5.692 15 C 0.591 3.409 16 O -0.579 6.579 17 C -0.315 4.315 18 C 0.102 3.898 19 N -0.466 5.466 20 C 0.004 3.996 21 C 0.314 3.686 22 O -0.388 6.388 23 C 0.018 3.982 24 C 0.009 3.991 25 O -0.377 6.377 26 S 0.283 5.717 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.070 0.930 33 H -0.012 1.012 34 H -0.013 1.013 35 H 0.259 0.741 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.414 0.586 39 H 0.209 0.791 40 H 0.139 0.861 41 H 0.106 0.894 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 8.548 31.426 33.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.065 4.065 3 C -0.182 4.182 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.218 1.218 12 H -0.192 1.192 13 C 0.018 3.982 14 N -0.344 5.344 15 C 0.377 3.623 16 O -0.461 6.461 17 C -0.440 4.440 18 C -0.057 4.057 19 N -0.182 5.182 20 C -0.270 4.270 21 C 0.215 3.785 22 O -0.309 6.309 23 C -0.057 4.057 24 C -0.066 4.066 25 O -0.298 6.298 26 S 0.541 5.459 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.006 0.994 34 H 0.006 0.994 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.253 0.747 39 H 0.226 0.774 40 H 0.156 0.844 41 H 0.124 0.876 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.502 7.391 31.934 33.625 hybrid contribution -0.475 0.509 -2.225 2.332 sum -7.977 7.900 29.708 31.759 Atomic orbital electron populations 1.21726 0.93539 1.01123 1.01764 1.20718 0.96748 0.96354 0.92636 1.21725 1.00085 0.94565 1.01777 1.18963 0.94393 0.94239 0.92157 1.21563 1.30445 1.12116 0.91035 0.90884 1.25956 0.95733 0.95899 1.02733 1.70116 1.38717 1.24928 1.24111 0.85595 0.78931 0.78736 0.78340 1.19180 1.21820 1.19180 1.21352 0.98249 0.95555 0.83058 1.45707 1.52595 1.31957 1.04177 1.16941 0.79619 0.83051 0.82691 1.90835 1.40179 1.27808 1.87279 1.25850 1.13251 1.05756 0.99163 1.22619 0.94374 0.92277 0.96471 1.66070 1.22830 1.31097 0.98218 1.28209 1.00578 0.97432 1.00792 1.22335 0.89519 0.84092 0.82598 1.89250 1.60685 1.36883 1.44064 1.24802 0.86224 1.03799 0.90907 1.24576 0.94893 0.94983 0.92179 1.89040 1.25125 1.47254 1.68358 1.84197 1.43260 1.24426 0.94017 0.91187 0.92373 0.94302 0.94255 0.92384 0.91155 0.99403 0.99437 0.93217 0.92836 0.92900 0.74712 0.77413 0.84393 0.87557 0.84670 0.84914 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 2 C -0.06 -2.36 0.54 -52.18 -0.03 -2.39 16 3 C -0.12 -4.06 8.05 71.98 0.58 -3.48 16 4 C 0.04 2.01 4.04 29.85 0.12 2.13 16 5 C -0.51 -27.22 7.65 25.60 0.20 -27.02 16 6 H 0.07 3.60 5.68 -2.91 -0.02 3.59 16 7 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 8 N -0.94 -56.81 13.29 21.45 0.28 -56.53 16 9 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 C 0.14 4.96 4.56 86.38 0.39 5.35 16 14 N -0.69 -19.21 4.94 -467.06 -2.31 -21.52 16 15 C 0.59 18.09 7.79 86.45 0.67 18.77 16 16 O -0.58 -22.46 16.97 -4.33 -0.07 -22.53 16 17 C -0.32 -7.84 6.48 23.88 0.15 -7.69 16 18 C 0.10 2.15 10.93 84.23 0.92 3.07 16 19 N -0.47 -10.62 10.33 -190.29 -1.96 -12.58 16 20 C 0.00 0.09 6.96 88.46 0.62 0.71 16 21 C 0.31 4.86 4.55 71.24 0.32 5.18 16 22 O -0.39 -5.30 10.94 -126.22 -1.38 -6.68 16 23 C 0.02 0.10 7.95 72.63 0.58 0.67 16 24 C 0.01 0.08 8.07 72.63 0.59 0.66 16 25 O -0.38 -6.20 11.07 -126.22 -1.40 -7.59 16 26 S 0.28 6.25 22.58 -56.49 -1.28 4.98 16 27 H 0.07 1.71 6.86 -2.39 -0.02 1.69 16 28 H 0.06 2.04 6.62 -2.39 -0.02 2.03 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.06 2.03 6.62 -2.39 -0.02 2.02 16 32 H 0.07 1.71 6.86 -2.39 -0.02 1.69 16 33 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 34 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.41 8.80 4.87 -92.71 -0.45 8.34 16 39 H 0.21 3.05 7.15 -2.91 -0.02 3.03 16 40 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 42 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.13 0.34 8.14 -2.39 -0.02 0.33 16 44 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -74.78 374.58 0.65 -74.13 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.58 Total: 10.29 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 6.16 Total: -7.41 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -3.99 Total: -90.63 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -2.85 Total: -36.81 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -1.28 Total: 4.98 kcal Total: -74.78 0.65 -74.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807847017.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.436 kcal (2) G-P(sol) polarization free energy of solvation -74.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds