Wall clock time and date at job start Sat Apr 11 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99661 * 269.99401 * 4 3 2 6 6 C 1.39039 * 120.00223 * 90.00088 * 4 3 2 7 7 C 1.39224 * 119.92964 * 359.72380 * 6 4 3 8 8 C 1.37612 * 120.06573 * 179.72871 * 7 6 4 9 9 C 1.39795 * 119.93236 * 0.56102 * 8 7 6 10 10 C 1.47516 * 120.07091 * 179.68030 * 9 8 7 11 11 O 1.21597 * 120.00488 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99682 * 0.03108 * 10 9 8 13 13 S 1.65611 * 119.99717 * 179.97438 * 12 10 9 14 14 O 1.42092 * 104.27493 * 181.06849 * 13 12 10 15 15 O 1.42099 * 104.27462 * 308.92977 * 13 12 10 16 16 C 1.81403 * 104.44696 * 64.99878 * 13 12 10 17 17 C 1.50703 * 109.46752 * 179.97438 * 16 13 12 18 18 H 1.07992 * 119.99891 * 359.97438 * 17 16 13 19 19 C 1.37876 * 119.99493 * 180.02562 * 17 16 13 20 20 N 1.31514 * 120.00212 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99614 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47158 * 60.00251 * 21 19 17 23 23 H 1.48506 * 109.47188 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47619 * 299.99884 * 21 19 17 25 25 C 1.39793 * 119.86072 * 359.71115 * 9 8 7 26 26 C 1.37613 * 119.93504 * 359.97438 * 25 9 8 27 27 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 31 31 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 1.09003 * 109.47033 * 90.00622 * 5 4 3 35 35 H 1.09000 * 109.47241 * 210.00440 * 5 4 3 36 36 H 1.09000 * 109.47127 * 330.00198 * 5 4 3 37 37 H 1.07994 * 119.96656 * 0.02562 * 7 6 4 38 38 H 1.08005 * 120.03334 * 180.27118 * 8 7 6 39 39 H 0.96995 * 120.00254 * 359.97438 * 12 10 9 40 40 H 1.09001 * 109.47087 * 300.00141 * 16 13 12 41 41 H 1.09003 * 109.46543 * 60.00126 * 16 13 12 42 42 H 0.97006 * 119.99755 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.03826 * 179.97438 * 25 9 8 44 44 H 1.07992 * 119.96830 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.1998 1.4427 -1.2050 7 6 3.5017 1.4371 -2.4096 8 6 4.1865 1.4429 -3.6032 9 6 5.5844 1.4425 -3.6055 10 6 6.3215 1.4416 -4.8833 11 8 7.5375 1.4408 -4.8838 12 7 5.6471 1.4417 -6.0502 13 16 6.4746 1.4413 -7.4848 14 8 5.4571 1.4673 -8.4762 15 8 7.3996 2.5123 -7.3560 16 6 7.3433 -0.1510 -7.5057 17 6 8.1412 -0.2712 -8.7785 18 1 8.1268 0.5299 -9.5025 19 6 8.8888 -1.4045 -9.0190 20 7 8.9059 -2.3803 -8.1375 21 14 9.8772 -1.5538 -10.5970 22 1 10.8673 -0.4493 -10.6673 23 1 10.5885 -2.8573 -10.6142 24 1 8.9622 -1.4733 -11.7638 25 6 6.2824 1.4424 -2.3943 26 6 5.5920 1.4431 -1.2039 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 4.4198 0.4147 1.5823 35 1 5.1903 1.9563 1.1372 36 1 3.6492 1.9562 2.0277 37 1 2.4218 1.4330 -2.4072 38 1 3.6444 1.4430 -4.5374 39 1 4.6772 1.4420 -6.0498 40 1 8.0144 -0.2101 -6.6488 41 1 6.6167 -0.9619 -7.4548 42 1 9.4322 -3.1775 -8.3066 43 1 7.3624 1.4417 -2.3927 44 1 6.1306 1.4426 -0.2679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835410809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:55 Heat of formation + Delta-G solvation = -83.530417 kcal Electronic energy + Delta-G solvation = -26917.990174 eV Core-core repulsion = 22962.492446 eV Total energy + Delta-G solvation = -3955.497727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.37049 -39.18941 -36.81199 -36.12930 -35.09131 -34.18937 -33.72596 -33.29514 -31.22335 -30.18552 -28.98755 -27.93356 -25.74496 -23.53801 -23.11762 -22.46500 -21.79460 -20.43038 -19.21797 -18.32998 -17.36615 -17.07754 -16.47970 -16.09055 -15.59796 -15.36091 -15.18743 -15.07607 -14.74676 -14.51029 -14.26748 -14.13276 -14.01982 -13.76378 -13.43585 -12.77421 -12.67901 -12.57129 -12.47400 -12.29697 -12.11428 -12.08227 -11.79913 -11.78693 -11.41992 -11.22092 -11.19767 -11.11570 -10.93571 -10.84407 -10.61001 -10.39317 -10.08412 -9.94959 -9.74906 -9.15057 -9.09177 -8.65129 -7.61349 -6.27540 -4.38541 0.91537 1.13713 1.30974 2.68627 2.80666 3.27619 3.28672 3.31299 3.35589 3.84489 4.27263 4.35884 4.44339 4.53821 4.57143 4.71457 4.74524 4.77861 4.87389 4.95140 5.03148 5.05988 5.12609 5.17784 5.24218 5.30354 5.31781 5.34933 5.38905 5.47940 5.58440 5.65991 5.81788 5.87569 5.99443 6.12122 6.33574 6.55840 6.68028 6.85543 6.87030 7.11436 7.15985 7.47203 7.79513 7.95143 8.62508 9.28262 10.84243 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.002385 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.049201 B =11737.389220 C =11791.222040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.146 4.146 3 C 0.120 3.880 4 N -0.626 5.626 5 C 0.089 3.911 6 C 0.242 3.758 7 C -0.208 4.208 8 C -0.030 4.030 9 C -0.198 4.198 10 C 0.582 3.418 11 O -0.493 6.493 12 N -1.059 6.059 13 S 2.556 3.444 14 O -0.971 6.971 15 O -0.953 6.953 16 C -0.404 4.404 17 C -0.534 4.534 18 H 0.070 0.930 19 C 0.077 3.923 20 N -0.877 5.877 21 Si 0.906 3.094 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.269 1.269 25 C -0.003 4.003 26 C -0.210 4.210 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.421 0.579 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.269 0.731 43 H 0.139 0.861 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.388 4.997 21.489 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.185 4.185 3 C -0.003 4.003 4 N -0.335 5.335 5 C -0.054 4.054 6 C 0.138 3.862 7 C -0.230 4.230 8 C -0.050 4.050 9 C -0.205 4.205 10 C 0.371 3.629 11 O -0.366 6.366 12 N -0.819 5.819 13 S 2.659 3.341 14 O -0.962 6.962 15 O -0.943 6.943 16 C -0.541 4.541 17 C -0.574 4.574 18 H 0.088 0.912 19 C -0.129 4.129 20 N -0.513 5.513 21 Si 0.732 3.268 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.194 1.194 25 C -0.023 4.023 26 C -0.232 4.232 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.256 0.744 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.157 0.843 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.565 5.595 21.136 26.838 hybrid contribution -0.037 -0.807 -0.364 0.886 sum -15.602 4.788 20.772 26.416 Atomic orbital electron populations 1.21709 0.95111 1.02158 1.01895 1.21992 0.96080 0.97419 1.02960 1.21592 0.78998 0.96810 1.02946 1.46436 1.04986 1.78732 1.03318 1.21711 0.97420 1.01484 0.84776 1.18029 0.91316 0.91062 0.85777 1.20564 0.99776 1.12046 0.90660 1.21067 0.92822 0.93189 0.97897 1.19629 0.93593 1.14131 0.93107 1.18051 0.87135 0.73845 0.83880 1.90968 1.12565 1.45811 1.87220 1.55390 1.21019 1.81166 1.24327 1.07022 0.74821 0.80625 0.71659 1.93511 1.58104 1.88910 1.55649 1.93525 1.63606 1.53224 1.83930 1.27600 1.08281 1.11074 1.07138 1.20253 1.30384 1.05076 1.01671 0.91197 1.24919 0.95703 0.94874 0.97445 1.69956 1.39594 1.06898 1.34874 0.86407 0.80174 0.77804 0.82414 1.19373 1.20715 1.19433 1.21076 1.00672 0.90367 0.90146 1.20641 0.91820 1.12085 0.98679 0.92712 0.92432 0.92348 0.91276 0.91829 0.90320 0.90726 0.93107 0.90927 0.91459 0.85372 0.85436 0.74447 0.88267 0.89712 0.92145 0.84295 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.15 -0.81 6.26 -26.73 -0.17 -0.98 16 3 C 0.12 0.66 5.18 -4.04 -0.02 0.64 16 4 N -0.63 -4.57 2.99 -179.62 -0.54 -5.11 16 5 C 0.09 0.47 10.22 59.85 0.61 1.09 16 6 C 0.24 2.34 6.55 -83.86 -0.55 1.79 16 7 C -0.21 -2.01 9.18 -39.44 -0.36 -2.37 16 8 C -0.03 -0.34 9.53 -39.23 -0.37 -0.71 16 9 C -0.20 -2.81 5.88 -104.95 -0.62 -3.43 16 10 C 0.58 10.54 7.50 -12.48 -0.09 10.45 16 11 O -0.49 -10.84 14.43 -11.84 -0.17 -11.01 16 12 N -1.06 -18.29 5.55 30.45 0.17 -18.12 16 13 S 2.56 57.45 5.03 -107.50 -0.54 56.91 16 14 O -0.97 -22.71 18.08 -57.54 -1.04 -23.75 16 15 O -0.95 -24.49 17.04 -64.79 -1.10 -25.59 16 16 C -0.40 -10.36 5.64 36.01 0.20 -10.16 16 17 C -0.53 -15.30 9.13 -34.44 -0.31 -15.61 16 18 H 0.07 1.94 7.71 -52.49 -0.40 1.54 16 19 C 0.08 2.19 5.46 -17.82 -0.10 2.09 16 20 N -0.88 -25.58 13.29 55.43 0.74 -24.84 16 21 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 25 C 0.00 -0.04 9.58 -39.23 -0.38 -0.41 16 26 C -0.21 -2.19 9.18 -39.44 -0.36 -2.55 16 27 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.43 6.18 -51.93 -0.32 0.11 16 33 H 0.07 0.31 7.89 -51.93 -0.41 -0.10 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.37 6.17 -51.93 -0.32 0.05 16 36 H 0.07 0.25 7.89 -51.93 -0.41 -0.16 16 37 H 0.13 0.96 6.12 -52.49 -0.32 0.64 16 38 H 0.13 1.13 6.39 -52.48 -0.34 0.79 16 39 H 0.42 5.42 6.81 -34.48 -0.23 5.19 16 40 H 0.10 2.67 7.19 -51.92 -0.37 2.30 16 41 H 0.08 2.09 8.14 -51.92 -0.42 1.67 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.14 1.83 7.64 -52.48 -0.40 1.42 16 44 H 0.13 1.07 6.11 -52.49 -0.32 0.75 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -37.21 377.87 -9.91 -47.12 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.95 Total: 2.69 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -2.15 Total: -20.48 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.37 Total: -48.07 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -2.31 Total: -60.35 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 57.45 SS G_CDS: -0.54 Total: 56.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.21 -9.91 -47.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835410809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.406 kcal (2) G-P(sol) polarization free energy of solvation -37.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds