Wall clock time and date at job start Sat Apr 11 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99661 * 269.99401 * 4 3 2 6 6 C 1.39039 * 120.00223 * 90.00088 * 4 3 2 7 7 C 1.39224 * 119.92964 * 359.72380 * 6 4 3 8 8 C 1.37612 * 120.06573 * 179.72871 * 7 6 4 9 9 C 1.39795 * 119.93236 * 0.56102 * 8 7 6 10 10 C 1.47516 * 120.07091 * 179.68030 * 9 8 7 11 11 O 1.21597 * 120.00488 * 180.02562 * 10 9 8 12 12 N 1.34779 * 119.99682 * 0.03108 * 10 9 8 13 13 S 1.65611 * 119.99717 * 179.97438 * 12 10 9 14 14 O 1.42092 * 104.27493 * 181.06849 * 13 12 10 15 15 O 1.42099 * 104.27462 * 308.92977 * 13 12 10 16 16 C 1.81403 * 104.44696 * 64.99878 * 13 12 10 17 17 C 1.50703 * 109.46752 * 179.97438 * 16 13 12 18 18 H 1.07992 * 119.99891 * 359.97438 * 17 16 13 19 19 C 1.37876 * 119.99493 * 180.02562 * 17 16 13 20 20 N 1.31514 * 120.00212 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99614 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47158 * 60.00251 * 21 19 17 23 23 H 1.48506 * 109.47188 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47619 * 299.99884 * 21 19 17 25 25 C 1.39793 * 119.86072 * 359.71115 * 9 8 7 26 26 C 1.37613 * 119.93504 * 359.97438 * 25 9 8 27 27 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 31 31 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 32 32 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 33 33 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 34 34 H 1.09003 * 109.47033 * 90.00622 * 5 4 3 35 35 H 1.09000 * 109.47241 * 210.00440 * 5 4 3 36 36 H 1.09000 * 109.47127 * 330.00198 * 5 4 3 37 37 H 1.07994 * 119.96656 * 0.02562 * 7 6 4 38 38 H 1.08005 * 120.03334 * 180.27118 * 8 7 6 39 39 H 0.96995 * 120.00254 * 359.97438 * 12 10 9 40 40 H 1.09001 * 109.47087 * 300.00141 * 16 13 12 41 41 H 1.09003 * 109.46543 * 60.00126 * 16 13 12 42 42 H 0.97006 * 119.99755 * 180.02562 * 20 19 17 43 43 H 1.08003 * 120.03826 * 179.97438 * 25 9 8 44 44 H 1.07992 * 119.96830 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.1998 1.4427 -1.2050 7 6 3.5017 1.4371 -2.4096 8 6 4.1865 1.4429 -3.6032 9 6 5.5844 1.4425 -3.6055 10 6 6.3215 1.4416 -4.8833 11 8 7.5375 1.4408 -4.8838 12 7 5.6471 1.4417 -6.0502 13 16 6.4746 1.4413 -7.4848 14 8 5.4571 1.4673 -8.4762 15 8 7.3996 2.5123 -7.3560 16 6 7.3433 -0.1510 -7.5057 17 6 8.1412 -0.2712 -8.7785 18 1 8.1268 0.5299 -9.5025 19 6 8.8888 -1.4045 -9.0190 20 7 8.9059 -2.3803 -8.1375 21 14 9.8772 -1.5538 -10.5970 22 1 10.8673 -0.4493 -10.6673 23 1 10.5885 -2.8573 -10.6142 24 1 8.9622 -1.4733 -11.7638 25 6 6.2824 1.4424 -2.3943 26 6 5.5920 1.4431 -1.2039 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 4.4198 0.4147 1.5823 35 1 5.1903 1.9563 1.1372 36 1 3.6492 1.9562 2.0277 37 1 2.4218 1.4330 -2.4072 38 1 3.6444 1.4430 -4.5374 39 1 4.6772 1.4420 -6.0498 40 1 8.0144 -0.2101 -6.6488 41 1 6.6167 -0.9619 -7.4548 42 1 9.4322 -3.1775 -8.3066 43 1 7.3624 1.4417 -2.3927 44 1 6.1306 1.4426 -0.2679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835410809.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:54 Heat of formation + Delta-G solvation = -109.741883 kcal Electronic energy + Delta-G solvation = -26919.126788 eV Core-core repulsion = 22962.492446 eV Total energy + Delta-G solvation = -3956.634342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.49240 -40.24088 -38.12324 -37.50622 -37.04720 -35.65211 -35.41597 -34.31442 -32.05631 -31.13978 -30.98775 -28.40882 -26.54117 -25.60628 -24.06706 -23.31491 -22.50747 -21.33124 -20.82157 -19.61951 -19.07748 -18.30354 -18.10332 -17.50028 -16.85903 -16.64068 -16.31484 -16.18242 -15.97298 -15.88384 -15.62748 -15.10172 -14.86169 -14.54002 -14.47016 -14.12958 -13.89880 -13.61587 -13.56247 -13.49859 -13.42893 -13.19992 -13.09092 -13.06707 -12.77332 -12.72073 -12.62682 -12.54434 -12.20762 -12.02734 -11.86750 -11.78716 -11.51347 -11.36497 -11.05867 -10.85325 -10.78499 -10.00950 -8.42261 -8.33473 -6.61957 -0.72669 -0.10072 0.47002 1.37050 1.42140 1.49915 1.53552 1.66716 2.10674 2.30462 2.74761 2.89283 2.93120 3.25067 3.48622 3.76596 3.88346 4.01879 4.04843 4.12362 4.26945 4.35770 4.41458 4.48251 4.57930 4.64881 4.67542 4.70157 4.75213 4.77089 4.92272 4.96382 5.04987 5.18644 5.21735 5.25302 5.28773 5.29736 5.40157 5.46713 5.68067 5.71065 5.84119 6.26541 6.42166 6.47162 6.57458 7.09555 8.70809 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.002385 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.049201 B =11737.389220 C =11791.222040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.114 3.886 4 N -0.620 5.620 5 C 0.080 3.920 6 C 0.250 3.750 7 C -0.208 4.208 8 C -0.025 4.025 9 C -0.229 4.229 10 C 0.579 3.421 11 O -0.543 6.543 12 N -1.042 6.042 13 S 2.602 3.398 14 O -0.977 6.977 15 O -0.985 6.985 16 C -0.420 4.420 17 C -0.569 4.569 18 H 0.069 0.931 19 C 0.023 3.977 20 N -0.909 5.909 21 Si 0.969 3.031 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.256 1.256 25 C -0.015 4.015 26 C -0.212 4.212 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.442 0.558 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.275 0.725 43 H 0.125 0.875 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.752 5.408 22.888 30.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C -0.008 4.008 4 N -0.326 5.326 5 C -0.062 4.062 6 C 0.143 3.857 7 C -0.230 4.230 8 C -0.045 4.045 9 C -0.236 4.236 10 C 0.371 3.629 11 O -0.419 6.419 12 N -0.807 5.807 13 S 2.702 3.298 14 O -0.968 6.968 15 O -0.975 6.975 16 C -0.555 4.555 17 C -0.608 4.608 18 H 0.087 0.913 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.791 3.209 22 H -0.189 1.189 23 H -0.193 1.193 24 H -0.181 1.181 25 C -0.035 4.035 26 C -0.235 4.235 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.173 0.827 38 H 0.167 0.833 39 H 0.282 0.718 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.142 0.858 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.987 5.990 22.561 29.469 hybrid contribution 0.520 -0.926 -0.516 1.181 sum -17.467 5.063 22.046 28.579 Atomic orbital electron populations 1.21692 0.94196 1.02181 1.02597 1.21925 0.96821 0.97172 1.02038 1.21801 0.77693 0.97003 1.04311 1.46744 1.05981 1.76729 1.03144 1.21922 0.97853 1.02141 0.84284 1.18215 0.91215 0.89301 0.86962 1.20842 1.01053 1.11132 0.89944 1.21293 0.91448 0.92048 0.99675 1.19405 0.94764 1.18413 0.91029 1.18762 0.86813 0.72406 0.84948 1.90935 1.14843 1.48491 1.87673 1.54824 1.22164 1.80931 1.22796 1.05352 0.73999 0.78323 0.72086 1.93491 1.57777 1.88488 1.57017 1.93480 1.65335 1.53690 1.85005 1.27653 1.08406 1.14149 1.05312 1.20710 1.31564 1.05605 1.02888 0.91260 1.25920 0.96623 0.94392 1.01048 1.70049 1.40321 1.07458 1.36717 0.85438 0.78810 0.78380 0.78302 1.18924 1.19253 1.18064 1.21087 1.00301 0.91178 0.90935 1.20777 0.92470 1.11816 0.98400 0.91693 0.92058 0.92724 0.92885 0.92102 0.89748 0.88635 0.92699 0.90756 0.89253 0.82692 0.83269 0.71836 0.90500 0.89637 0.91632 0.85751 0.83326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.91 71.98 0.71 -0.21 16 2 C -0.14 -1.17 6.26 30.60 0.19 -0.98 16 3 C 0.11 0.84 5.18 86.38 0.45 1.29 16 4 N -0.62 -7.04 2.99 -722.19 -2.16 -9.20 16 5 C 0.08 0.60 10.22 127.77 1.31 1.90 16 6 C 0.25 4.24 6.55 38.47 0.25 4.49 16 7 C -0.21 -3.45 9.18 22.36 0.21 -3.25 16 8 C -0.03 -0.52 9.53 22.50 0.21 -0.31 16 9 C -0.23 -6.56 5.88 -20.08 -0.12 -6.68 16 10 C 0.58 21.72 7.50 86.69 0.65 22.37 16 11 O -0.54 -25.41 14.43 12.35 0.18 -25.23 16 12 N -1.04 -36.41 5.55 -175.82 -0.98 -37.39 16 13 S 2.60 119.61 5.03 -56.49 -0.28 119.33 16 14 O -0.98 -45.55 18.08 -127.65 -2.31 -47.86 16 15 O -0.98 -52.10 17.04 -120.72 -2.06 -54.16 16 16 C -0.42 -22.52 5.64 71.24 0.40 -22.12 16 17 C -0.57 -33.53 9.13 25.60 0.23 -33.30 16 18 H 0.07 3.96 7.71 -2.91 -0.02 3.93 16 19 C 0.02 1.36 5.46 84.65 0.46 1.82 16 20 N -0.91 -54.26 13.29 21.45 0.28 -53.98 16 21 Si 0.97 44.23 29.54 68.60 2.03 46.25 16 22 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 24 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 25 C -0.01 -0.40 9.58 22.50 0.22 -0.18 16 26 C -0.21 -4.19 9.18 22.36 0.21 -3.98 16 27 H 0.06 0.28 8.14 -2.39 -0.02 0.27 16 28 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.08 0.57 6.18 -2.39 -0.01 0.55 16 33 H 0.10 0.38 7.89 -2.39 -0.02 0.36 16 34 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.07 0.56 6.17 -2.39 -0.01 0.55 16 36 H 0.09 0.32 7.89 -2.39 -0.02 0.30 16 37 H 0.16 1.72 6.12 -2.91 -0.02 1.70 16 38 H 0.15 2.28 6.39 -2.91 -0.02 2.26 16 39 H 0.44 10.99 6.81 -96.74 -0.66 10.34 16 40 H 0.08 4.42 7.19 -2.39 -0.02 4.40 16 41 H 0.09 4.43 8.14 -2.39 -0.02 4.41 16 42 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 43 H 0.12 3.55 7.64 -2.91 -0.02 3.53 16 44 H 0.15 2.23 6.11 -2.91 -0.02 2.21 16 Total: -1.00 -82.74 377.87 0.46 -82.28 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.37 Total: 19.11 kcal Atomic # 6 Polarization: -44.53 SS G_CDS: 5.38 Total: -39.15 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -2.85 Total: -100.57 kcal Atomic # 8 Polarization: -123.06 SS G_CDS: -4.19 Total: -127.25 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Atomic # 16 Polarization: 119.61 SS G_CDS: -0.28 Total: 119.33 kcal Total: -82.74 0.46 -82.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835410809.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.459 kcal (2) G-P(sol) polarization free energy of solvation -82.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds