Wall clock time and date at job start Sat Apr 11 2020 05:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.46840 * 2 1 4 4 H 1.09003 * 109.46955 * 178.00311 * 3 2 1 5 5 C 1.50693 * 109.47367 * 298.00237 * 3 2 1 6 6 H 1.08005 * 120.00062 * 115.15721 * 5 3 2 7 7 C 1.37882 * 120.00328 * 295.15682 * 5 3 2 8 8 N 1.31517 * 119.99664 * 352.32822 * 7 5 3 9 9 Si 1.86794 * 120.00181 * 172.32757 * 7 5 3 10 10 H 1.48504 * 109.47378 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47209 * 300.00249 * 9 7 5 12 12 H 1.48504 * 109.47082 * 60.00047 * 9 7 5 13 13 N 1.46896 * 109.46820 * 58.00833 * 3 2 1 14 14 C 1.46903 * 111.00765 * 82.20050 * 13 3 2 15 15 C 1.50699 * 109.47457 * 185.18715 * 14 13 3 16 16 O 1.21288 * 119.99622 * 359.97438 * 15 14 13 17 17 N 1.34773 * 119.99863 * 179.97438 * 15 14 13 18 18 C 1.39925 * 119.99903 * 184.99695 * 17 15 14 19 19 C 1.38898 * 120.06968 * 324.03477 * 18 17 15 20 20 C 1.38086 * 119.92540 * 179.72015 * 19 18 17 21 21 C 1.38308 * 120.07628 * 0.57422 * 20 19 18 22 22 C 1.38264 * 120.13415 * 359.68209 * 21 20 19 23 23 S 1.76203 * 119.96081 * 180.02562 * 22 21 20 24 24 C 1.81391 * 104.44957 * 270.02145 * 23 22 21 25 25 O 1.42098 * 104.27699 * 26.09515 * 23 22 21 26 26 O 1.42108 * 104.27477 * 153.94634 * 23 22 21 27 27 C 1.38130 * 120.07436 * 0.03668 * 22 21 20 28 28 H 1.09001 * 109.47562 * 305.14822 * 1 2 3 29 29 H 1.09002 * 109.47274 * 65.15511 * 1 2 3 30 30 H 1.09004 * 109.46816 * 185.15179 * 1 2 3 31 31 H 1.09002 * 109.47298 * 240.00511 * 2 1 3 32 32 H 1.08994 * 109.47475 * 120.00267 * 2 1 3 33 33 H 0.96997 * 119.99825 * 358.36494 * 8 7 5 34 34 H 1.00906 * 110.99985 * 206.15784 * 13 3 2 35 35 H 1.09000 * 109.46700 * 305.19121 * 14 13 3 36 36 H 1.08997 * 109.46430 * 65.18385 * 14 13 3 37 37 H 0.97003 * 119.99955 * 4.99747 * 17 15 14 38 38 H 1.07997 * 120.03304 * 359.97438 * 19 18 17 39 39 H 1.08001 * 119.96471 * 180.25480 * 20 19 18 40 40 H 1.07997 * 119.93509 * 179.69493 * 21 20 19 41 41 H 1.08991 * 109.47739 * 59.99984 * 24 23 22 42 42 H 1.09003 * 109.47121 * 180.02562 * 24 23 22 43 43 H 1.09005 * 109.46981 * 299.99635 * 24 23 22 44 44 H 1.07994 * 120.03986 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1293 1.4428 0.0358 5 6 1.5784 2.1385 -1.2544 6 1 0.8919 2.9698 -1.1894 7 6 2.0326 1.7142 -2.4852 8 7 2.9804 0.8054 -2.5587 9 14 1.3017 2.4301 -4.0480 10 1 1.9572 1.8129 -5.2290 11 1 -0.1559 2.1486 -4.0870 12 1 1.5231 3.8983 -4.0707 13 7 1.5112 2.1487 1.1746 14 6 2.3187 1.8633 2.3682 15 6 1.6756 2.4992 3.5737 16 8 0.6462 3.1286 3.4505 17 7 2.2444 2.3684 4.7885 18 6 1.5949 2.8683 5.9225 19 6 0.8636 4.0464 5.8431 20 6 0.2190 4.5340 6.9627 21 6 0.3108 3.8569 8.1652 22 6 1.0424 2.6866 8.2488 23 16 1.1556 1.8274 9.7829 24 6 2.6186 2.5332 10.5902 25 8 -0.0260 2.1976 10.4801 26 8 1.3940 0.4766 9.4112 27 6 1.6847 2.1905 7.1311 28 1 -0.3634 0.5916 0.8403 29 1 -0.3634 0.4318 -0.9326 30 1 -0.3633 -1.0236 0.0923 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.3764 0.4510 -1.7473 34 1 1.4555 3.1418 1.0048 35 1 2.3806 0.7851 2.5156 36 1 3.3211 2.2698 2.2342 37 1 3.1041 1.9277 4.8766 38 1 0.7958 4.5784 4.9056 39 1 -0.3532 5.4478 6.9006 40 1 -0.1902 4.2429 9.0406 41 1 2.4736 3.6039 10.7333 42 1 2.7666 2.0537 11.5578 43 1 3.4952 2.3658 9.9643 44 1 2.2564 1.2767 7.1971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846995186.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:07 Heat of formation + Delta-G solvation = -100.660766 kcal Electronic energy + Delta-G solvation = -26743.025311 eV Core-core repulsion = 22786.784756 eV Total energy + Delta-G solvation = -3956.240555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.68488 -39.73172 -38.19922 -38.13669 -36.97764 -35.94085 -34.65783 -32.71996 -32.35435 -31.09387 -30.23025 -28.77004 -26.42112 -25.36572 -24.58221 -23.58016 -21.93099 -21.15190 -20.01735 -19.37709 -19.08997 -18.07416 -17.47236 -17.20478 -17.08865 -16.83117 -16.67295 -15.98492 -15.96915 -15.74115 -15.51184 -15.13102 -14.94454 -14.67194 -14.23999 -13.96625 -13.90366 -13.84748 -13.59094 -13.49501 -13.28543 -13.14025 -13.09362 -13.06729 -12.73011 -12.64692 -12.23872 -12.03522 -11.96558 -11.91334 -11.77294 -11.63593 -11.51706 -10.94557 -10.58944 -10.41675 -10.33048 -9.39469 -9.17345 -8.58048 -6.28473 -0.86536 -0.22734 0.10692 1.42376 1.54651 1.61013 1.77956 1.80465 1.94858 2.43588 2.57235 3.04607 3.20131 3.21092 3.48474 3.61788 3.79836 4.01503 4.05335 4.14904 4.19117 4.24058 4.31638 4.35907 4.42711 4.46716 4.54197 4.65583 4.72529 4.92011 4.99857 5.00226 5.09819 5.15189 5.23812 5.29818 5.34081 5.49516 5.66894 5.80902 5.86033 6.07027 6.25213 6.47873 6.55460 6.75273 7.03005 7.48047 8.80299 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027271 B = 0.002039 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.467630 B =13729.005881 C =14107.171808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.103 4.103 3 C 0.211 3.789 4 H -0.025 1.025 5 C -0.600 4.600 6 H 0.044 0.956 7 C -0.020 4.020 8 N -0.932 5.932 9 Si 1.107 2.893 10 H -0.285 1.285 11 H -0.277 1.277 12 H -0.274 1.274 13 N -0.669 5.669 14 C 0.044 3.956 15 C 0.520 3.480 16 O -0.542 6.542 17 N -0.665 5.665 18 C 0.115 3.885 19 C -0.090 4.090 20 C -0.124 4.124 21 C -0.045 4.045 22 C -0.644 4.644 23 S 2.507 3.493 24 C -0.621 4.621 25 O -0.974 6.974 26 O -0.978 6.978 27 C -0.057 4.057 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.261 0.739 34 H 0.337 0.663 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.429 0.571 38 H 0.127 0.873 39 H 0.155 0.845 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 5.864 28.708 29.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.142 4.142 3 C 0.103 3.897 4 H -0.008 1.008 5 C -0.639 4.639 6 H 0.062 0.938 7 C -0.220 4.220 8 N -0.569 5.569 9 Si 0.930 3.070 10 H -0.211 1.211 11 H -0.203 1.203 12 H -0.199 1.199 13 N -0.300 5.300 14 C -0.089 4.089 15 C 0.308 3.692 16 O -0.417 6.417 17 N -0.313 5.313 18 C 0.020 3.980 19 C -0.110 4.110 20 C -0.143 4.143 21 C -0.064 4.064 22 C -0.729 4.729 23 S 2.690 3.310 24 C -0.775 4.775 25 O -0.971 6.971 26 O -0.975 6.975 27 C -0.078 4.078 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.155 0.845 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.269 0.731 38 H 0.145 0.855 39 H 0.172 0.828 40 H 0.182 0.818 41 H 0.175 0.825 42 H 0.173 0.827 43 H 0.173 0.827 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.928 5.065 27.287 27.820 hybrid contribution 1.502 0.856 0.565 1.819 sum 3.430 5.922 27.852 28.680 Atomic orbital electron populations 1.21317 0.95665 0.98960 1.00972 1.21430 0.96966 0.97388 0.98422 1.19083 0.90854 0.92029 0.87741 1.00781 1.22170 1.30282 1.18386 0.93028 0.93760 1.26907 0.94856 0.95539 1.04676 1.70915 1.24650 1.29260 1.32089 0.83040 0.75702 0.75809 0.72444 1.21068 1.20279 1.19912 1.60185 1.52608 1.14419 1.02795 1.21858 0.95783 1.02314 0.88933 1.21080 0.84166 0.79365 0.84573 1.90678 1.24800 1.40724 1.85494 1.43392 1.24215 1.59294 1.04368 1.17995 0.98752 0.93917 0.87344 1.21703 0.95721 0.93829 0.99785 1.21488 0.99453 1.01484 0.91851 1.21244 0.93787 0.91997 0.99392 1.30627 1.11095 1.10888 1.20300 1.04920 0.77840 0.74189 0.74045 1.30018 1.17429 1.15502 1.14570 1.93541 1.46297 1.84325 1.72986 1.93548 1.87205 1.33990 1.82790 1.20852 0.98096 0.98228 0.90639 0.92895 0.94873 0.93968 0.94394 0.93990 0.92842 0.84539 0.87175 0.90934 0.73126 0.85541 0.82773 0.81817 0.82499 0.82711 0.82742 0.82097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.90 9.50 71.98 0.68 -4.22 16 2 C -0.10 -4.72 5.43 30.59 0.17 -4.56 16 3 C 0.21 10.11 1.92 44.17 0.08 10.20 16 4 H -0.03 -1.28 7.27 -2.39 -0.02 -1.30 16 5 C -0.60 -32.47 7.43 25.60 0.19 -32.28 16 6 H 0.04 2.45 7.72 -2.91 -0.02 2.43 16 7 C -0.02 -1.12 5.21 84.66 0.44 -0.68 16 8 N -0.93 -54.37 12.92 21.45 0.28 -54.09 16 9 Si 1.11 49.78 29.91 68.60 2.05 51.83 16 10 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 N -0.67 -27.64 4.89 -499.47 -2.44 -30.08 16 14 C 0.04 1.35 5.96 85.56 0.51 1.86 16 15 C 0.52 15.48 7.72 87.66 0.68 16.16 16 16 O -0.54 -20.43 13.80 -3.05 -0.04 -20.47 16 17 N -0.66 -14.25 5.33 -303.50 -1.62 -15.87 16 18 C 0.11 2.58 6.28 38.15 0.24 2.82 16 19 C -0.09 -2.16 8.69 22.39 0.19 -1.97 16 20 C -0.12 -2.30 10.04 22.25 0.22 -2.07 16 21 C -0.04 -0.71 9.47 22.29 0.21 -0.50 16 22 C -0.64 -10.26 5.65 22.25 0.13 -10.13 16 23 S 2.51 31.30 5.80 -56.49 -0.33 30.97 16 24 C -0.62 -0.51 10.79 113.37 1.22 0.72 16 25 O -0.97 -18.86 17.12 -127.65 -2.19 -21.04 16 26 O -0.98 -19.89 17.12 -127.65 -2.19 -22.07 16 27 C -0.06 -1.03 9.39 22.39 0.21 -0.82 16 28 H 0.05 2.32 7.39 -2.39 -0.02 2.31 16 29 H 0.03 1.57 7.46 -2.39 -0.02 1.55 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.92 6.29 -2.39 -0.02 1.90 16 32 H 0.04 1.68 7.26 -2.39 -0.02 1.66 16 33 H 0.26 15.21 6.07 -92.71 -0.56 14.65 16 34 H 0.34 14.61 8.21 -89.69 -0.74 13.87 16 35 H 0.11 3.15 7.17 -2.39 -0.02 3.14 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.43 5.81 8.83 -92.71 -0.82 4.99 16 38 H 0.13 3.55 6.28 -2.91 -0.02 3.53 16 39 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.16 1.79 7.57 -2.91 -0.02 1.76 16 41 H 0.16 -0.46 8.14 -2.39 -0.02 -0.48 16 42 H 0.15 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H 0.15 -0.37 8.14 -2.39 -0.02 -0.39 16 44 H 0.16 2.22 7.57 -2.91 -0.02 2.20 16 Total: -1.00 -81.81 375.56 -1.59 -83.41 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -0.30 Total: 22.89 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 5.18 Total: -25.47 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -3.78 Total: -100.04 kcal Atomic # 8 Polarization: -59.17 SS G_CDS: -4.41 Total: -63.58 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.83 kcal Atomic # 16 Polarization: 31.30 SS G_CDS: -0.33 Total: 30.97 kcal Total: -81.81 -1.59 -83.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846995186.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.255 kcal (2) G-P(sol) polarization free energy of solvation -81.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds