Wall clock time and date at job start Sat Apr 11 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47232 * 2 1 4 4 C 1.50700 * 109.47048 * 240.00479 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99715 * 4 2 1 6 6 C 1.37875 * 120.00042 * 59.99898 * 4 2 1 7 7 N 1.31514 * 120.00041 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99847 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47271 * 90.00201 * 8 6 4 10 10 H 1.48505 * 109.46880 * 209.99681 * 8 6 4 11 11 H 1.48495 * 109.47179 * 329.99652 * 8 6 4 12 12 C 1.53004 * 109.47448 * 120.00519 * 2 1 3 13 13 N 1.46507 * 109.46773 * 299.99896 * 12 2 1 14 14 C 1.34774 * 119.99765 * 179.97438 * 13 12 2 15 15 O 1.21588 * 119.99889 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99902 * 179.97438 * 14 13 12 17 17 N 1.40105 * 119.99775 * 0.27790 * 16 14 13 18 18 C 1.39837 * 119.99672 * 179.72192 * 17 16 14 19 19 C 1.38837 * 120.08390 * 359.72419 * 18 17 16 20 20 C 1.38153 * 119.95159 * 179.69920 * 19 18 17 21 21 C 1.38271 * 120.11035 * 0.57639 * 20 19 18 22 22 N 1.48019 * 119.92005 * 179.70271 * 21 20 19 23 23 O 1.21796 * 120.00238 * 180.02562 * 22 21 20 24 24 O 1.21805 * 120.00135 * 0.02562 * 22 21 20 25 25 C 1.38290 * 120.16109 * 359.72367 * 21 20 19 26 26 C 1.38285 * 120.04941 * 359.97438 * 25 21 20 27 27 F 1.35099 * 120.05312 * 180.02562 * 26 25 21 28 28 H 1.08996 * 109.46678 * 299.99615 * 1 2 3 29 29 H 1.08998 * 109.47244 * 59.99463 * 1 2 3 30 30 H 1.09004 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47603 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47444 * 300.00414 * 3 2 1 33 33 H 1.09005 * 109.47105 * 60.00317 * 3 2 1 34 34 H 0.97000 * 119.99706 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47266 * 180.02562 * 12 2 1 36 36 H 1.08997 * 109.46955 * 59.99513 * 12 2 1 37 37 H 0.97004 * 119.99669 * 0.02562 * 13 12 2 38 38 H 0.97001 * 119.99727 * 179.97438 * 16 14 13 39 39 H 0.97000 * 119.99844 * 359.72383 * 17 16 14 40 40 H 1.08004 * 120.01992 * 359.97438 * 19 18 17 41 41 H 1.08000 * 119.94221 * 180.30161 * 20 19 18 42 42 H 1.08004 * 119.97554 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1614 -4.4120 10 1 2.4864 -0.1410 -5.1123 11 1 3.6292 -1.7580 -3.7124 12 6 2.0401 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8770 -0.4916 3.6695 15 8 2.5760 -1.4802 3.7809 16 7 1.4282 0.1440 4.7700 17 7 0.6187 1.2803 4.6415 18 6 0.1483 1.9363 5.7833 19 6 0.4776 1.4597 7.0451 20 6 0.0164 2.1136 8.1713 21 6 -0.7823 3.2351 8.0441 22 7 -1.2795 3.9285 9.2536 23 8 -1.9836 4.9162 9.1433 24 8 -0.9844 3.5114 10.3594 25 6 -1.1183 3.7101 6.7896 26 6 -0.6552 3.0645 5.6578 27 9 -0.9830 3.5288 4.4322 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 0.7080 1.1610 -3.4843 35 1 3.1301 -0.7210 1.2494 36 1 1.6767 -1.7490 1.2491 37 1 0.9937 0.7577 2.3564 38 1 1.6619 -0.1879 5.6509 39 1 0.3847 1.6119 3.7605 40 1 1.0974 0.5811 7.1460 41 1 0.2767 1.7456 9.1528 42 1 -1.7427 4.5861 6.6937 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854145703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:06 Heat of formation + Delta-G solvation = -6.599777 kcal Electronic energy + Delta-G solvation = -29015.860271 eV Core-core repulsion = 24529.778082 eV Total energy + Delta-G solvation = -4486.082189 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.50842 -42.38762 -40.65802 -39.62845 -37.03300 -36.77708 -36.55284 -33.60184 -32.74375 -31.63471 -30.90655 -29.65848 -26.15995 -25.91187 -25.90863 -25.13389 -23.94091 -22.72447 -21.27200 -19.90532 -19.62321 -19.17223 -18.84192 -18.60710 -17.75942 -17.12682 -16.80790 -16.39333 -16.37623 -16.01510 -15.66687 -15.07529 -14.91451 -14.61839 -14.41871 -13.98971 -13.92285 -13.40304 -13.21149 -13.06139 -12.47282 -12.42928 -12.38254 -11.78799 -11.59208 -11.44797 -11.36632 -11.36156 -11.00281 -10.81231 -10.57040 -10.52952 -10.27480 -10.24001 -9.82975 -9.82660 -9.52578 -8.96239 -8.82557 -8.50072 -8.06076 -6.14685 -4.25352 -0.49000 0.25579 0.96929 1.09835 1.28375 2.61004 2.95194 3.05457 3.20459 3.27948 3.28172 3.31789 3.71831 4.00886 4.07280 4.29170 4.38807 4.57073 4.91340 5.01802 5.10585 5.12615 5.22125 5.54665 5.78530 5.93365 6.12016 6.12485 6.27515 6.48884 6.55661 6.60913 6.70996 6.73492 6.83420 6.91835 7.17713 7.38385 7.40545 7.56565 7.84500 7.88629 8.01152 8.22765 8.39216 8.75077 9.41350 10.86910 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024069 B = 0.002195 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.045867 B =12751.011247 C =13722.986460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.145 3.855 13 N -0.726 5.726 14 C 0.707 3.293 15 O -0.569 6.569 16 N -0.540 5.540 17 N -0.515 5.515 18 C 0.247 3.753 19 C -0.179 4.179 20 C -0.001 4.001 21 C -0.088 4.088 22 N 0.041 4.959 23 O -0.169 6.169 24 O -0.168 6.168 25 C -0.033 4.033 26 C 0.030 3.970 27 F -0.120 7.120 28 H 0.002 0.998 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.088 0.912 33 H 0.002 0.998 34 H 0.261 0.739 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.390 0.610 38 H 0.431 0.569 39 H 0.436 0.564 40 H 0.153 0.847 41 H 0.161 0.839 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.499 4.915 18.188 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.023 3.977 13 N -0.381 5.381 14 C 0.406 3.594 15 O -0.442 6.442 16 N -0.298 5.298 17 N -0.238 5.238 18 C 0.135 3.865 19 C -0.203 4.203 20 C -0.021 4.021 21 C -0.175 4.175 22 N 0.557 4.443 23 O -0.383 6.383 24 O -0.382 6.382 25 C -0.054 4.054 26 C 0.004 3.996 27 F -0.099 7.099 28 H 0.020 0.980 29 H 0.107 0.893 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.107 0.893 33 H 0.020 0.980 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.225 0.775 38 H 0.277 0.723 39 H 0.281 0.719 40 H 0.170 0.830 41 H 0.179 0.821 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.671 3.764 17.189 17.798 hybrid contribution -0.205 0.264 -0.825 0.891 sum -2.876 4.028 16.364 17.096 Atomic orbital electron populations 1.21851 0.97708 0.99343 1.00003 1.18385 0.92820 0.92798 0.90453 1.21850 0.98783 0.98260 1.00000 1.20927 1.31804 1.12247 0.89668 0.92273 1.24883 0.94767 0.94878 0.98951 1.69786 1.36452 1.22657 1.23446 0.86539 0.79342 0.79389 0.82431 1.20647 1.21204 1.19856 1.21796 0.98356 0.95688 0.81898 1.45659 1.54922 1.32725 1.04833 1.15877 0.80618 0.82615 0.80242 1.91032 1.42746 1.26568 1.83877 1.44882 1.52437 1.22477 1.10030 1.43576 1.50112 1.22940 1.07198 1.18052 0.91037 0.89692 0.87754 1.20303 1.07445 1.04080 0.88522 1.20779 0.90294 0.90130 1.00887 1.20406 1.11149 1.01178 0.84720 1.43371 0.98645 0.99972 1.02277 1.94550 1.34551 1.15662 1.93512 1.94539 1.61938 1.69400 1.12281 1.20606 0.96739 0.99559 0.88491 1.16397 1.05301 0.96705 0.81160 1.91590 1.91308 1.87938 1.39073 0.97951 0.89343 0.95208 0.95204 0.89345 0.97954 0.92856 0.92234 0.92240 0.77469 0.72283 0.71884 0.82991 0.82109 0.81431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 8.08 37.16 0.30 -2.44 16 2 C 0.06 1.20 0.50 -155.66 -0.08 1.13 16 3 C -0.13 -2.74 8.08 37.16 0.30 -2.44 16 4 C -0.51 -12.54 8.01 -34.44 -0.28 -12.81 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.68 5.15 -17.82 -0.09 1.59 16 7 N -0.89 -22.54 9.35 55.43 0.52 -22.02 16 8 Si 0.90 19.92 29.54 -169.99 -5.02 14.89 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 12 C 0.14 2.78 4.50 -4.04 -0.02 2.77 16 13 N -0.73 -11.21 4.92 -65.22 -0.32 -11.53 16 14 C 0.71 10.43 8.68 -86.92 -0.75 9.67 16 15 O -0.57 -10.48 17.18 5.29 0.09 -10.39 16 16 N -0.54 -5.44 6.22 27.63 0.17 -5.27 16 17 N -0.51 -4.48 6.45 32.46 0.21 -4.27 16 18 C 0.25 1.86 6.73 -83.67 -0.56 1.29 16 19 C -0.18 -1.05 9.48 -39.39 -0.37 -1.42 16 20 C 0.00 0.00 9.55 -39.60 -0.38 -0.38 16 21 C -0.09 -0.73 6.85 -79.91 -0.55 -1.28 16 22 N 0.04 0.44 4.45 33.98 0.15 0.59 16 23 O -0.17 -1.99 18.44 -29.46 -0.54 -2.53 16 24 O -0.17 -1.91 18.44 -29.46 -0.54 -2.45 16 25 C -0.03 -0.25 9.53 -39.55 -0.38 -0.63 16 26 C 0.03 0.24 7.31 -39.25 -0.29 -0.05 16 27 F -0.12 -1.10 16.64 2.25 0.04 -1.06 16 28 H 0.00 0.03 6.86 -51.93 -0.36 -0.33 16 29 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 33 H 0.00 0.03 6.86 -51.93 -0.36 -0.33 16 34 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.39 5.37 4.08 -40.82 -0.17 5.21 16 38 H 0.43 3.33 6.71 -182.59 -1.23 2.11 16 39 H 0.44 3.93 6.19 -182.59 -1.13 2.79 16 40 H 0.15 0.57 6.21 -52.48 -0.33 0.25 16 41 H 0.16 0.74 7.60 -52.49 -0.40 0.34 16 42 H 0.17 1.12 7.60 -52.48 -0.40 0.72 16 LS Contribution 358.29 15.07 5.40 5.40 Total: -1.00 -28.56 358.29 -9.21 -37.77 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.22 Total: 5.88 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -3.14 Total: -5.01 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.73 Total: -42.50 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -1.00 Total: -15.37 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.56 -9.21 -37.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854145703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.172 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds