Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47232 * 2 1 4 4 C 1.50700 * 109.47048 * 240.00479 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99715 * 4 2 1 6 6 C 1.37875 * 120.00042 * 59.99898 * 4 2 1 7 7 N 1.31514 * 120.00041 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99847 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47271 * 90.00201 * 8 6 4 10 10 H 1.48505 * 109.46880 * 209.99681 * 8 6 4 11 11 H 1.48495 * 109.47179 * 329.99652 * 8 6 4 12 12 C 1.53004 * 109.47448 * 120.00519 * 2 1 3 13 13 N 1.46507 * 109.46773 * 299.99896 * 12 2 1 14 14 C 1.34774 * 119.99765 * 179.97438 * 13 12 2 15 15 O 1.21588 * 119.99889 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99902 * 179.97438 * 14 13 12 17 17 N 1.40105 * 119.99775 * 0.27790 * 16 14 13 18 18 C 1.39837 * 119.99672 * 179.72192 * 17 16 14 19 19 C 1.38837 * 120.08390 * 359.72419 * 18 17 16 20 20 C 1.38153 * 119.95159 * 179.69920 * 19 18 17 21 21 C 1.38271 * 120.11035 * 0.57639 * 20 19 18 22 22 N 1.48019 * 119.92005 * 179.70271 * 21 20 19 23 23 O 1.21796 * 120.00238 * 180.02562 * 22 21 20 24 24 O 1.21805 * 120.00135 * 0.02562 * 22 21 20 25 25 C 1.38290 * 120.16109 * 359.72367 * 21 20 19 26 26 C 1.38285 * 120.04941 * 359.97438 * 25 21 20 27 27 F 1.35099 * 120.05312 * 180.02562 * 26 25 21 28 28 H 1.08996 * 109.46678 * 299.99615 * 1 2 3 29 29 H 1.08998 * 109.47244 * 59.99463 * 1 2 3 30 30 H 1.09004 * 109.46869 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47603 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47444 * 300.00414 * 3 2 1 33 33 H 1.09005 * 109.47105 * 60.00317 * 3 2 1 34 34 H 0.97000 * 119.99706 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47266 * 180.02562 * 12 2 1 36 36 H 1.08997 * 109.46955 * 59.99513 * 12 2 1 37 37 H 0.97004 * 119.99669 * 0.02562 * 13 12 2 38 38 H 0.97001 * 119.99727 * 179.97438 * 16 14 13 39 39 H 0.97000 * 119.99844 * 359.72383 * 17 16 14 40 40 H 1.08004 * 120.01992 * 359.97438 * 19 18 17 41 41 H 1.08000 * 119.94221 * 180.30161 * 20 19 18 42 42 H 1.08004 * 119.97554 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6033 8 14 2.3213 -1.1201 -4.0080 9 1 1.3426 -2.1614 -4.4120 10 1 2.4864 -0.1410 -5.1123 11 1 3.6292 -1.7580 -3.7124 12 6 2.0401 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8770 -0.4916 3.6695 15 8 2.5760 -1.4802 3.7809 16 7 1.4282 0.1440 4.7700 17 7 0.6187 1.2803 4.6415 18 6 0.1483 1.9363 5.7833 19 6 0.4776 1.4597 7.0451 20 6 0.0164 2.1136 8.1713 21 6 -0.7823 3.2351 8.0441 22 7 -1.2795 3.9285 9.2536 23 8 -1.9836 4.9162 9.1433 24 8 -0.9844 3.5114 10.3594 25 6 -1.1183 3.7101 6.7896 26 6 -0.6552 3.0645 5.6578 27 9 -0.9830 3.5288 4.4322 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 0.7080 1.1610 -3.4843 35 1 3.1301 -0.7210 1.2494 36 1 1.6767 -1.7490 1.2491 37 1 0.9937 0.7577 2.3564 38 1 1.6619 -0.1879 5.6509 39 1 0.3847 1.6119 3.7605 40 1 1.0974 0.5811 7.1460 41 1 0.2767 1.7456 9.1528 42 1 -1.7427 4.5861 6.6937 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854145703.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = -22.593323 kcal Electronic energy + Delta-G solvation = -29016.553803 eV Core-core repulsion = 24529.778082 eV Total energy + Delta-G solvation = -4486.775722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.17038 -43.16142 -41.64496 -40.46153 -38.35513 -37.68407 -37.59633 -35.09403 -33.68404 -32.55274 -32.19444 -30.43313 -27.60013 -27.53865 -26.90932 -26.81193 -24.63868 -23.42414 -22.40057 -20.88537 -20.58438 -20.29818 -19.73933 -19.60862 -18.53310 -18.02533 -17.71123 -17.47980 -17.14246 -17.11727 -16.75830 -16.64561 -16.27317 -15.43090 -15.21977 -15.01214 -14.94604 -14.78996 -14.40572 -14.05958 -14.01800 -13.32932 -13.14687 -13.14291 -13.05356 -12.72036 -12.62326 -12.61321 -12.29090 -12.25565 -12.23493 -12.16376 -11.76881 -11.52478 -11.23279 -11.05431 -10.73872 -10.42715 -10.40220 -10.11916 -8.82839 -8.04035 -6.19267 -1.22831 -0.29665 0.23287 0.36998 0.49936 1.42199 1.46197 1.53119 1.83863 1.87434 2.07244 2.45613 2.67497 3.14963 3.20582 3.28964 3.49810 3.67931 4.01871 4.21516 4.36633 4.45008 4.49583 4.58980 4.64881 4.68237 4.85359 4.97330 4.99835 5.02780 5.08269 5.16308 5.23285 5.36993 5.48596 5.64334 5.66418 5.76704 5.98315 6.12875 6.19118 6.41216 6.54067 6.84589 6.87411 7.25431 7.48932 8.94793 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024069 B = 0.002195 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.045867 B =12751.011247 C =13722.986460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.526 4.526 5 H 0.048 0.952 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.943 3.057 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.162 3.838 13 N -0.722 5.722 14 C 0.711 3.289 15 O -0.607 6.607 16 N -0.519 5.519 17 N -0.517 5.517 18 C 0.247 3.753 19 C -0.166 4.166 20 C 0.009 3.991 21 C -0.095 4.095 22 N 0.042 4.958 23 O -0.201 6.201 24 O -0.175 6.175 25 C -0.032 4.032 26 C 0.027 3.973 27 F -0.128 7.128 28 H 0.034 0.966 29 H 0.062 0.938 30 H 0.021 0.979 31 H 0.021 0.979 32 H 0.062 0.938 33 H 0.034 0.966 34 H 0.260 0.740 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.399 0.601 38 H 0.446 0.554 39 H 0.436 0.564 40 H 0.179 0.821 41 H 0.182 0.818 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 4.748 19.559 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.564 4.564 5 H 0.066 0.934 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.770 3.230 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 C 0.038 3.962 13 N -0.379 5.379 14 C 0.410 3.590 15 O -0.484 6.484 16 N -0.277 5.277 17 N -0.242 5.242 18 C 0.136 3.864 19 C -0.189 4.189 20 C -0.011 4.011 21 C -0.182 4.182 22 N 0.554 4.446 23 O -0.408 6.408 24 O -0.389 6.389 25 C -0.053 4.053 26 C 0.002 3.998 27 F -0.107 7.107 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.237 0.763 38 H 0.294 0.706 39 H 0.281 0.719 40 H 0.196 0.804 41 H 0.200 0.800 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.611 3.673 18.624 19.161 hybrid contribution -0.244 0.321 -1.175 1.242 sum -2.855 3.993 17.449 18.126 Atomic orbital electron populations 1.21694 0.97178 0.98855 1.00299 1.18368 0.93182 0.93014 0.90364 1.21692 0.98166 0.97864 1.00294 1.21249 1.31665 1.12195 0.91318 0.93361 1.25433 0.95197 0.95563 1.00968 1.69898 1.36994 1.23278 1.23593 0.85787 0.78707 0.78451 0.80021 1.20622 1.21131 1.19959 1.21293 0.97386 0.95007 0.82503 1.45310 1.55307 1.32935 1.04339 1.15779 0.80285 0.82290 0.80621 1.91015 1.44376 1.28316 1.84662 1.44393 1.51606 1.22373 1.09307 1.43520 1.50396 1.22585 1.07664 1.18162 0.90844 0.89399 0.87948 1.20582 1.06655 1.04289 0.87419 1.21045 0.88987 0.88972 1.02074 1.20555 1.12009 1.01856 0.83786 1.43672 0.98298 0.99813 1.02816 1.94548 1.35806 1.16721 1.93728 1.94518 1.61872 1.69297 1.13219 1.20658 0.96633 0.99719 0.88286 1.16419 1.05615 0.96954 0.80851 1.91575 1.91458 1.88118 1.39535 0.94699 0.91915 0.96024 0.96011 0.91917 0.94706 0.93080 0.93562 0.93545 0.76337 0.70566 0.71947 0.80360 0.80048 0.80948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 8.08 71.98 0.58 -4.43 16 2 C 0.05 2.18 0.50 -52.93 -0.03 2.15 16 3 C -0.12 -5.00 8.08 71.98 0.58 -4.42 16 4 C -0.53 -26.11 8.01 25.60 0.21 -25.91 16 5 H 0.05 2.44 7.74 -2.91 -0.02 2.42 16 6 C 0.03 1.42 5.15 84.65 0.44 1.86 16 7 N -0.90 -46.00 9.35 21.45 0.20 -45.80 16 8 Si 0.94 41.00 29.54 68.60 2.03 43.03 16 9 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 C 0.16 6.12 4.50 86.38 0.39 6.51 16 13 N -0.72 -20.96 4.92 -478.52 -2.36 -23.32 16 14 C 0.71 19.48 8.68 179.06 1.55 21.03 16 15 O -0.61 -21.56 17.18 -3.99 -0.07 -21.63 16 16 N -0.52 -8.85 6.22 -184.75 -1.15 -10.00 16 17 N -0.52 -7.38 6.45 -51.21 -0.33 -7.71 16 18 C 0.25 2.94 6.73 38.21 0.26 3.19 16 19 C -0.17 -1.29 9.48 22.39 0.21 -1.08 16 20 C 0.01 0.09 9.55 22.26 0.21 0.30 16 21 C -0.09 -1.38 6.85 36.40 0.25 -1.14 16 22 N 0.04 0.86 4.45 -46.41 -0.21 0.65 16 23 O -0.20 -4.68 18.44 18.89 0.35 -4.33 16 24 O -0.17 -3.74 18.44 18.88 0.35 -3.40 16 25 C -0.03 -0.44 9.53 22.29 0.21 -0.22 16 26 C 0.03 0.37 7.31 22.48 0.16 0.54 16 27 F -0.13 -2.10 16.64 44.97 0.75 -1.35 16 28 H 0.03 1.15 6.86 -2.39 -0.02 1.14 16 29 H 0.06 2.92 6.07 -2.39 -0.01 2.91 16 30 H 0.02 0.87 8.14 -2.38 -0.02 0.86 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 2.92 6.07 -2.39 -0.01 2.90 16 33 H 0.03 1.15 6.86 -2.38 -0.02 1.13 16 34 H 0.26 12.90 8.31 -92.71 -0.77 12.13 16 35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.40 9.96 4.08 -92.71 -0.38 9.58 16 38 H 0.45 5.22 6.71 -213.32 -1.43 3.79 16 39 H 0.44 6.56 6.19 -213.32 -1.32 5.24 16 40 H 0.18 0.47 6.21 -2.91 -0.02 0.45 16 41 H 0.18 0.98 7.60 -2.91 -0.02 0.95 16 42 H 0.17 2.13 7.60 -2.91 -0.02 2.11 16 Total: -1.00 -62.04 358.29 2.58 -59.45 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -2.00 Total: 16.02 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 5.03 Total: -1.61 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -3.84 Total: -86.18 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: 0.63 Total: -29.35 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.75 Total: -1.35 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -62.04 2.58 -59.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854145703.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.861 kcal (2) G-P(sol) polarization free energy of solvation -62.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds