Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46761 * 2 1 4 4 C 1.52998 * 109.47272 * 240.00330 * 2 1 3 5 5 C 1.50697 * 109.47473 * 59.99500 * 4 2 1 6 6 H 1.08001 * 119.99711 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00047 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00271 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00129 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47294 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47261 * 120.00139 * 9 7 5 12 12 H 1.48503 * 109.47226 * 239.99991 * 9 7 5 13 13 C 1.52994 * 109.47248 * 119.99793 * 2 1 3 14 14 O 1.45200 * 109.47285 * 300.00190 * 13 2 1 15 15 C 1.34232 * 117.00036 * 180.02562 * 14 13 2 16 16 O 1.20819 * 119.99954 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99736 * 180.02562 * 15 14 13 18 18 H 1.09000 * 109.57648 * 320.71437 * 17 15 14 19 19 O 1.43212 * 109.51179 * 200.44556 * 17 15 14 20 20 C 1.43077 * 113.62911 * 298.06967 * 19 17 15 21 21 C 1.53136 * 109.15227 * 302.04348 * 20 19 17 22 22 O 1.43080 * 109.15125 * 55.31237 * 21 20 19 23 23 C 1.43077 * 113.59182 * 302.04877 * 22 21 20 24 24 H 1.09000 * 109.52446 * 298.05273 * 23 22 21 25 25 C 1.52995 * 109.52315 * 177.91957 * 23 22 21 26 26 F 1.39902 * 109.47354 * 66.17279 * 25 23 22 27 27 F 1.39905 * 109.47058 * 186.17009 * 25 23 22 28 28 F 1.39897 * 109.47252 * 306.16781 * 25 23 22 29 29 H 1.08994 * 109.47226 * 299.99546 * 1 2 3 30 30 H 1.09003 * 109.47279 * 60.00651 * 1 2 3 31 31 H 1.09007 * 109.46529 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47142 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47040 * 300.00077 * 3 2 1 34 34 H 1.08995 * 109.47069 * 59.99724 * 3 2 1 35 35 H 1.09002 * 109.47121 * 180.02562 * 4 2 1 36 36 H 1.09007 * 109.46956 * 299.99265 * 4 2 1 37 37 H 0.96998 * 120.00071 * 180.02562 * 8 7 5 38 38 H 1.09002 * 109.47334 * 180.02562 * 13 2 1 39 39 H 1.09002 * 109.47595 * 60.00169 * 13 2 1 40 40 H 1.08997 * 109.52229 * 182.13769 * 20 19 17 41 41 H 1.09004 * 109.57921 * 61.97966 * 20 19 17 42 42 H 1.08999 * 109.52494 * 295.41175 * 21 20 19 43 43 H 1.08996 * 109.58259 * 175.24601 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8704 -0.4822 -3.7319 8 7 2.6258 -1.5520 -3.8526 9 14 1.2483 0.3987 -5.2572 10 1 0.4246 1.5664 -4.8531 11 1 2.4036 0.8645 -6.0656 12 1 0.4226 -0.5342 -6.0654 13 6 2.0400 -0.7212 1.2492 14 8 1.5560 -0.0367 2.4348 15 6 1.9172 -0.5464 3.6229 16 8 2.6142 -1.5321 3.6706 17 6 1.4522 0.1102 4.8972 18 1 1.4817 1.1936 4.7816 19 8 2.3076 -0.2816 5.9769 20 6 2.2957 -1.6886 6.2364 21 6 0.8625 -2.1302 6.5461 22 8 0.0075 -1.7397 5.4674 23 6 0.0194 -0.3327 5.2078 24 1 -0.3452 0.2026 6.0845 25 6 -0.8816 -0.0261 4.0100 26 9 -2.2114 -0.3056 4.3431 27 9 -0.7605 1.3254 3.6691 28 9 -0.4970 -0.8176 2.9224 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 3.1301 -0.7215 -1.2490 36 1 1.6768 -1.7489 -1.2492 37 1 2.8601 -1.8834 -4.7336 38 1 3.1300 -0.7208 1.2494 39 1 1.6768 -1.7489 1.2493 40 1 2.9368 -1.9069 7.0905 41 1 2.6609 -2.2248 5.3604 42 1 0.5261 -1.6554 7.4678 43 1 0.8310 -3.2136 6.6620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870341507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = -322.014011 kcal Electronic energy + Delta-G solvation = -33053.480981 eV Core-core repulsion = 28070.739467 eV Total energy + Delta-G solvation = -4982.741514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.25299 -47.80555 -47.65619 -41.41842 -39.56875 -37.34271 -36.57458 -35.44765 -33.14485 -32.29609 -29.19909 -27.85826 -27.05733 -26.37750 -26.11938 -23.82408 -23.51509 -22.54812 -20.74796 -18.98413 -18.71508 -18.59930 -18.17644 -17.86977 -17.20409 -16.87921 -16.52228 -16.22100 -16.01790 -15.82230 -14.93361 -14.59889 -14.51445 -14.44686 -14.23942 -14.11593 -13.96836 -13.80020 -13.75637 -13.66142 -13.16840 -12.96041 -12.80215 -12.38164 -12.22560 -12.14995 -12.04409 -11.85208 -11.30561 -11.24214 -10.95548 -10.79218 -10.58136 -10.46667 -10.33406 -10.30786 -10.17896 -9.72134 -9.52527 -9.16545 -8.91961 -8.35849 -5.99932 -4.00765 1.91239 2.05005 2.48534 2.83208 3.12212 3.31583 3.37409 3.39542 3.42952 3.51873 3.93444 4.22012 4.36671 4.43573 4.48264 4.54438 4.67405 4.68245 4.88425 5.22325 5.35961 5.44902 5.52217 5.55931 5.83182 6.03177 6.11240 6.21499 6.23835 6.40296 6.55516 6.61744 6.74659 6.79504 7.13286 7.15180 7.16283 7.62016 7.70257 7.73790 7.98923 8.40881 9.03795 9.62376 11.11810 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.003374 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.687335 B = 8297.666561 C = 8934.143917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.057 4.057 3 C -0.126 4.126 4 C 0.035 3.965 5 C -0.508 4.508 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.083 3.917 14 O -0.339 6.339 15 C 0.438 3.562 16 O -0.491 6.491 17 C 0.069 3.931 18 H 0.160 0.840 19 O -0.336 6.336 20 C -0.015 4.015 21 C 0.029 3.971 22 O -0.353 6.353 23 C 0.021 3.979 24 H 0.127 0.873 25 C 0.466 3.534 26 F -0.174 7.174 27 F -0.164 7.164 28 F -0.153 7.153 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.259 0.741 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.068 0.932 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.772 2.741 24.079 24.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.057 4.057 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.546 4.546 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.011 3.989 14 O -0.254 6.254 15 C 0.280 3.720 16 O -0.380 6.380 17 C 0.009 3.991 18 H 0.177 0.823 19 O -0.254 6.254 20 C -0.090 4.090 21 C -0.047 4.047 22 O -0.272 6.272 23 C -0.039 4.039 24 H 0.145 0.855 25 C 0.412 3.588 26 F -0.155 7.155 27 F -0.145 7.145 28 F -0.134 7.134 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.086 0.914 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.499 2.325 23.882 24.413 hybrid contribution -0.260 0.189 -1.038 1.086 sum -4.759 2.514 22.845 23.470 Atomic orbital electron populations 1.21713 0.94667 1.00956 1.00724 1.20809 0.96277 0.96139 0.92501 1.21719 0.99945 0.95753 1.00904 1.19127 0.96307 0.95319 0.89442 1.21190 1.31078 1.12070 0.90256 0.91994 1.25010 0.95306 0.95086 0.99116 1.69977 1.37118 1.23084 1.23356 0.86565 0.78606 0.79718 0.83299 1.19695 1.21128 1.21111 1.23548 0.98693 0.96109 0.80572 1.86514 1.68593 1.55761 1.14552 1.23859 0.78386 0.83067 0.86736 1.90503 1.35407 1.24875 1.87197 1.22355 0.89142 1.02873 0.84727 0.82296 1.88301 1.64354 1.24804 1.47945 1.24034 0.97100 0.82263 1.05619 1.23460 0.89864 1.02577 0.88773 1.88202 1.66054 1.18333 1.54585 1.23749 0.94217 0.87964 0.98005 0.85503 1.19739 0.79520 0.75363 0.84226 1.93220 1.36545 1.93404 1.92335 1.93247 1.95748 1.32584 1.92949 1.93328 1.90151 1.73620 1.56261 0.94230 0.91708 0.93771 0.93801 0.91533 0.94183 0.96400 0.96351 0.93096 0.91568 0.91411 0.86811 0.86706 0.91370 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 7.82 37.16 0.29 -2.12 16 2 C -0.06 -1.16 0.61 -154.51 -0.09 -1.26 16 3 C -0.13 -2.39 8.08 37.16 0.30 -2.09 16 4 C 0.04 0.88 4.04 -27.89 -0.11 0.77 16 5 C -0.51 -13.74 7.65 -34.44 -0.26 -14.00 16 6 H 0.06 1.63 5.68 -52.49 -0.30 1.33 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.08 1.55 4.29 37.15 0.16 1.71 16 14 O -0.34 -5.48 6.15 -39.26 -0.24 -5.72 16 15 C 0.44 6.49 5.62 36.01 0.20 6.69 16 16 O -0.49 -8.27 13.27 -25.21 -0.33 -8.61 16 17 C 0.07 0.75 3.19 -27.80 -0.09 0.66 16 18 H 0.16 1.32 7.83 -51.93 -0.41 0.92 16 19 O -0.34 -3.56 10.60 -62.11 -0.66 -4.21 16 20 C -0.01 -0.13 6.61 37.23 0.25 0.11 16 21 C 0.03 0.22 7.05 37.23 0.26 0.49 16 22 O -0.35 -3.88 10.08 -48.80 -0.49 -4.38 16 23 C 0.02 0.21 2.63 -26.66 -0.07 0.14 16 24 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 25 C 0.47 5.59 2.57 37.15 0.10 5.69 16 26 F -0.17 -2.09 17.32 2.25 0.04 -2.05 16 27 F -0.16 -1.90 16.58 2.25 0.04 -1.86 16 28 F -0.15 -2.32 12.06 2.25 0.03 -2.29 16 29 H 0.04 0.70 6.76 -51.93 -0.35 0.34 16 30 H 0.06 1.33 6.62 -51.93 -0.34 0.98 16 31 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 34 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 39 H 0.07 1.31 8.13 -51.93 -0.42 0.89 16 40 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.12 1.37 5.08 -51.93 -0.26 1.11 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.12 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 351.78 15.07 5.30 5.30 Total: -1.00 -31.86 351.78 -5.54 -37.41 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -5.77 Total: -2.39 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 0.83 Total: -1.75 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -1.73 Total: -22.92 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 0.10 Total: -6.20 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.86 -5.54 -37.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870341507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -284.607 kcal (2) G-P(sol) polarization free energy of solvation -31.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -316.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -322.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds