Wall clock time and date at job start Sat Apr 11 2020 05:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46761 * 2 1 4 4 C 1.52998 * 109.47272 * 240.00330 * 2 1 3 5 5 C 1.50697 * 109.47473 * 59.99500 * 4 2 1 6 6 H 1.08001 * 119.99711 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00047 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00271 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00129 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47294 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47261 * 120.00139 * 9 7 5 12 12 H 1.48503 * 109.47226 * 239.99991 * 9 7 5 13 13 C 1.52994 * 109.47248 * 119.99793 * 2 1 3 14 14 O 1.45200 * 109.47285 * 300.00190 * 13 2 1 15 15 C 1.34232 * 117.00036 * 180.02562 * 14 13 2 16 16 O 1.20819 * 119.99954 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99736 * 180.02562 * 15 14 13 18 18 H 1.09000 * 109.57648 * 320.71437 * 17 15 14 19 19 O 1.43212 * 109.51179 * 200.44556 * 17 15 14 20 20 C 1.43077 * 113.62911 * 298.06967 * 19 17 15 21 21 C 1.53136 * 109.15227 * 302.04348 * 20 19 17 22 22 O 1.43080 * 109.15125 * 55.31237 * 21 20 19 23 23 C 1.43077 * 113.59182 * 302.04877 * 22 21 20 24 24 H 1.09000 * 109.52446 * 298.05273 * 23 22 21 25 25 C 1.52995 * 109.52315 * 177.91957 * 23 22 21 26 26 F 1.39902 * 109.47354 * 66.17279 * 25 23 22 27 27 F 1.39905 * 109.47058 * 186.17009 * 25 23 22 28 28 F 1.39897 * 109.47252 * 306.16781 * 25 23 22 29 29 H 1.08994 * 109.47226 * 299.99546 * 1 2 3 30 30 H 1.09003 * 109.47279 * 60.00651 * 1 2 3 31 31 H 1.09007 * 109.46529 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47142 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47040 * 300.00077 * 3 2 1 34 34 H 1.08995 * 109.47069 * 59.99724 * 3 2 1 35 35 H 1.09002 * 109.47121 * 180.02562 * 4 2 1 36 36 H 1.09007 * 109.46956 * 299.99265 * 4 2 1 37 37 H 0.96998 * 120.00071 * 180.02562 * 8 7 5 38 38 H 1.09002 * 109.47334 * 180.02562 * 13 2 1 39 39 H 1.09002 * 109.47595 * 60.00169 * 13 2 1 40 40 H 1.08997 * 109.52229 * 182.13769 * 20 19 17 41 41 H 1.09004 * 109.57921 * 61.97966 * 20 19 17 42 42 H 1.08999 * 109.52494 * 295.41175 * 21 20 19 43 43 H 1.08996 * 109.58259 * 175.24601 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8704 -0.4822 -3.7319 8 7 2.6258 -1.5520 -3.8526 9 14 1.2483 0.3987 -5.2572 10 1 0.4246 1.5664 -4.8531 11 1 2.4036 0.8645 -6.0656 12 1 0.4226 -0.5342 -6.0654 13 6 2.0400 -0.7212 1.2492 14 8 1.5560 -0.0367 2.4348 15 6 1.9172 -0.5464 3.6229 16 8 2.6142 -1.5321 3.6706 17 6 1.4522 0.1102 4.8972 18 1 1.4817 1.1936 4.7816 19 8 2.3076 -0.2816 5.9769 20 6 2.2957 -1.6886 6.2364 21 6 0.8625 -2.1302 6.5461 22 8 0.0075 -1.7397 5.4674 23 6 0.0194 -0.3327 5.2078 24 1 -0.3452 0.2026 6.0845 25 6 -0.8816 -0.0261 4.0100 26 9 -2.2114 -0.3056 4.3431 27 9 -0.7605 1.3254 3.6691 28 9 -0.4970 -0.8176 2.9224 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 3.1301 -0.7215 -1.2490 36 1 1.6768 -1.7489 -1.2492 37 1 2.8601 -1.8834 -4.7336 38 1 3.1300 -0.7208 1.2494 39 1 1.6768 -1.7489 1.2493 40 1 2.9368 -1.9069 7.0905 41 1 2.6609 -2.2248 5.3604 42 1 0.5261 -1.6554 7.4678 43 1 0.8310 -3.2136 6.6620 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870341507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:11 Heat of formation + Delta-G solvation = -341.083202 kcal Electronic energy + Delta-G solvation = -33054.307883 eV Core-core repulsion = 28070.739467 eV Total energy + Delta-G solvation = -4983.568417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.138 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.18533 -48.70210 -48.65879 -42.39084 -40.64558 -38.71724 -37.54987 -36.85212 -34.46510 -33.84563 -29.94622 -29.39014 -28.60808 -27.97047 -27.45624 -25.17935 -24.58590 -23.82692 -21.81983 -20.01069 -19.83897 -19.62547 -19.33674 -18.96545 -18.36193 -18.04210 -17.82737 -17.51677 -17.06566 -16.73079 -16.49152 -15.74126 -15.61062 -15.47410 -15.29592 -15.19712 -15.01302 -14.92854 -14.84147 -14.77699 -14.64516 -14.32458 -14.05055 -13.93521 -13.60101 -13.41207 -13.01384 -12.98051 -12.75924 -12.69947 -12.63938 -12.33059 -12.25832 -11.97735 -11.94356 -11.85939 -11.38219 -11.28249 -11.05684 -10.90885 -10.53784 -10.33838 -8.16224 -6.23883 0.83389 1.19122 1.39009 1.41474 1.43299 1.54996 2.04366 2.30375 2.43593 2.54649 2.70666 3.14110 3.18503 3.34081 3.39543 3.74725 3.83530 3.84219 3.90496 3.92390 4.15606 4.20514 4.29286 4.47152 4.58286 4.65733 4.72605 4.80386 5.01003 5.08008 5.12446 5.39207 5.41683 5.44315 5.46545 5.48923 5.52640 5.54131 5.73491 5.86732 6.27276 6.49484 6.89837 7.43806 8.96715 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.003374 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.687335 B = 8297.666561 C = 8934.143917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.053 4.053 3 C -0.119 4.119 4 C 0.041 3.959 5 C -0.514 4.514 6 H 0.071 0.929 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.960 3.040 10 H -0.258 1.258 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.096 3.904 14 O -0.335 6.335 15 C 0.430 3.570 16 O -0.517 6.517 17 C 0.075 3.925 18 H 0.189 0.811 19 O -0.337 6.337 20 C -0.019 4.019 21 C 0.028 3.972 22 O -0.380 6.380 23 C 0.028 3.972 24 H 0.172 0.828 25 C 0.459 3.541 26 F -0.175 7.175 27 F -0.161 7.161 28 F -0.177 7.177 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.033 0.967 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.067 0.933 35 H -0.009 1.009 36 H -0.013 1.013 37 H 0.261 0.739 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.143 0.857 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.894 4.636 26.174 27.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.053 4.053 3 C -0.176 4.176 4 C 0.004 3.996 5 C -0.552 4.552 6 H 0.089 0.911 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.785 3.215 10 H -0.182 1.182 11 H -0.208 1.208 12 H -0.209 1.209 13 C 0.023 3.977 14 O -0.251 6.251 15 C 0.273 3.727 16 O -0.407 6.407 17 C 0.015 3.985 18 H 0.206 0.794 19 O -0.255 6.255 20 C -0.094 4.094 21 C -0.047 4.047 22 O -0.299 6.299 23 C -0.032 4.032 24 H 0.189 0.811 25 C 0.405 3.595 26 F -0.157 7.157 27 F -0.143 7.143 28 F -0.159 7.159 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.009 0.991 36 H 0.005 0.995 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.161 0.839 41 H 0.099 0.901 42 H 0.118 0.882 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.629 4.232 26.005 26.941 hybrid contribution 0.115 -0.474 -1.585 1.658 sum -5.515 3.757 24.420 25.315 Atomic orbital electron populations 1.21605 0.93763 1.00466 1.01219 1.20612 0.96865 0.96684 0.91181 1.21641 0.99779 0.94486 1.01683 1.18974 0.94509 0.94201 0.91901 1.21558 1.30556 1.12121 0.90926 0.91051 1.25926 0.95566 0.95837 1.02642 1.70120 1.38732 1.24875 1.24141 0.85471 0.78126 0.78813 0.79108 1.18184 1.20780 1.20933 1.23067 0.98005 0.95209 0.81459 1.86490 1.68703 1.55410 1.14491 1.24930 0.77651 0.82875 0.87251 1.90526 1.36562 1.26087 1.87492 1.22606 0.89697 1.03934 0.82303 0.79448 1.88312 1.64451 1.25537 1.47164 1.24124 0.98822 0.81215 1.05288 1.23691 0.88262 1.03799 0.88963 1.88176 1.66754 1.18999 1.56006 1.23903 0.92763 0.88178 0.98309 0.81093 1.20135 0.79919 0.75134 0.84350 1.93214 1.36772 1.93426 1.92248 1.93246 1.95745 1.32240 1.93026 1.93279 1.90408 1.74398 1.57792 0.92002 0.92692 0.94820 0.94063 0.92573 0.91415 0.99072 0.99455 0.93064 0.92305 0.93004 0.83903 0.90075 0.88207 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 7.82 71.98 0.56 -3.85 16 2 C -0.05 -2.20 0.61 -52.18 -0.03 -2.23 16 3 C -0.12 -4.41 8.08 71.98 0.58 -3.83 16 4 C 0.04 2.16 4.04 29.85 0.12 2.28 16 5 C -0.51 -28.25 7.65 25.60 0.20 -28.05 16 6 H 0.07 3.73 5.68 -2.91 -0.02 3.71 16 7 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 8 N -0.94 -57.33 13.29 21.45 0.28 -57.04 16 9 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 10 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 C 0.10 3.67 4.29 71.98 0.31 3.98 16 14 O -0.34 -10.63 6.15 -51.44 -0.32 -10.95 16 15 C 0.43 12.41 5.62 71.24 0.40 12.81 16 16 O -0.52 -17.66 13.27 28.17 0.37 -17.29 16 17 C 0.07 1.42 3.19 29.90 0.10 1.52 16 18 H 0.19 2.42 7.83 -2.39 -0.02 2.40 16 19 O -0.34 -6.19 10.60 -123.28 -1.31 -7.49 16 20 C -0.02 -0.31 6.61 72.03 0.48 0.17 16 21 C 0.03 0.35 7.05 72.03 0.51 0.86 16 22 O -0.38 -7.52 10.08 -136.00 -1.37 -8.89 16 23 C 0.03 0.47 2.63 30.64 0.08 0.56 16 24 H 0.17 1.37 8.14 -2.39 -0.02 1.35 16 25 C 0.46 10.07 2.57 71.98 0.19 10.26 16 26 F -0.18 -3.88 17.32 44.97 0.78 -3.10 16 27 F -0.16 -3.30 16.58 44.97 0.75 -2.55 16 28 F -0.18 -5.27 12.06 44.97 0.54 -4.73 16 29 H 0.06 2.11 6.76 -2.39 -0.02 2.10 16 30 H 0.05 2.22 6.62 -2.39 -0.02 2.21 16 31 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 33 H 0.06 2.19 6.62 -2.39 -0.02 2.18 16 34 H 0.07 2.13 7.68 -2.39 -0.02 2.11 16 35 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 36 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 37 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16 39 H 0.05 2.11 8.13 -2.39 -0.02 2.09 16 40 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.92 5.08 -2.39 -0.01 1.90 16 42 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -71.18 351.78 6.74 -64.44 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.04 Total: 6.60 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 3.94 Total: -5.24 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.28 Total: -57.04 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -2.62 Total: -44.61 kcal Atomic # 9 Polarization: -12.45 SS G_CDS: 2.07 Total: -10.39 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -71.18 6.74 -64.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870341507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -276.645 kcal (2) G-P(sol) polarization free energy of solvation -71.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -347.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -341.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds