Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34223 * 117.00397 * 2 1 4 4 O 1.20834 * 119.99764 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00393 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47181 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47500 * 179.97438 * 6 5 3 8 8 C 1.36764 * 120.00426 * 270.00559 * 7 6 5 9 9 H 1.08000 * 120.00084 * 130.83646 * 8 7 6 10 10 C 1.39094 * 119.99567 * 310.84050 * 8 7 6 11 11 N 1.31329 * 120.00289 * 353.40967 * 10 8 7 12 12 Si 1.86810 * 119.99669 * 173.41255 * 10 8 7 13 13 H 1.48494 * 109.47007 * 60.00013 * 12 10 8 14 14 H 1.48499 * 109.47022 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47122 * 299.99835 * 12 10 8 16 16 C 1.34778 * 119.99814 * 89.99747 * 7 6 5 17 17 O 1.21675 * 119.99862 * 3.79978 * 16 7 6 18 18 C 1.47069 * 120.00078 * 183.79734 * 16 7 6 19 19 N 1.30650 * 125.54422 * 173.39542 * 18 16 7 20 20 C 1.30723 * 115.88317 * 180.17737 * 19 18 16 21 21 C 1.50694 * 122.10745 * 179.75889 * 20 19 18 22 22 C 1.53002 * 109.47403 * 254.71785 * 21 20 19 23 23 C 1.53006 * 109.47022 * 14.71825 * 21 20 19 24 24 C 1.52999 * 109.47006 * 134.71436 * 21 20 19 25 25 C 1.34238 * 115.78395 * 359.49990 * 20 19 18 26 26 S 1.71065 * 109.11038 * 0.26464 * 25 20 19 27 27 H 1.09003 * 109.47554 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47378 * 300.00180 * 1 2 3 29 29 H 1.09004 * 109.47149 * 60.00640 * 1 2 3 30 30 H 1.08997 * 109.46900 * 59.99814 * 5 3 2 31 31 H 1.09006 * 109.47117 * 299.99646 * 5 3 2 32 32 H 1.09001 * 109.47472 * 59.99982 * 6 5 3 33 33 H 1.08999 * 109.47483 * 299.99912 * 6 5 3 34 34 H 0.97008 * 120.00209 * 185.00430 * 11 10 8 35 35 H 1.08998 * 109.46742 * 60.00102 * 22 21 20 36 36 H 1.09001 * 109.46689 * 179.97438 * 22 21 20 37 37 H 1.08996 * 109.46975 * 300.00133 * 22 21 20 38 38 H 1.09000 * 109.47076 * 59.99821 * 23 21 20 39 39 H 1.09001 * 109.46886 * 179.97438 * 23 21 20 40 40 H 1.08995 * 109.46770 * 299.99725 * 23 21 20 41 41 H 1.09009 * 109.46813 * 60.00530 * 24 21 20 42 42 H 1.09001 * 109.47321 * 180.02562 * 24 21 20 43 43 H 1.09000 * 109.47375 * 300.00352 * 24 21 20 44 44 H 1.08008 * 125.44160 * 180.27189 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7419 -0.0002 7 7 5.4631 2.8187 0.0010 8 6 6.1451 2.8553 1.1859 9 1 6.9806 2.1907 1.3489 10 6 5.7625 3.7486 2.1811 11 7 4.8329 4.6439 1.9380 12 14 6.5710 3.6747 3.8636 13 1 8.0318 3.9005 3.7211 14 1 5.9912 4.7257 4.7379 15 1 6.3331 2.3397 4.4689 16 6 6.1371 2.8530 -1.1657 17 8 5.5287 2.8901 -2.2188 18 6 7.6077 2.8457 -1.1659 19 7 8.3666 2.7538 -2.2254 20 6 9.6554 2.7620 -2.0067 21 6 10.6585 2.6580 -3.1264 22 6 11.2704 1.2557 -3.1344 23 6 9.9599 2.9173 -4.4627 24 6 11.7637 3.6955 -2.9190 25 6 10.0290 2.8743 -0.7222 26 16 8.6323 2.9678 0.2611 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 3.9564 0.7804 -0.8891 31 1 3.9557 0.7809 0.8909 32 1 3.6101 3.2367 0.8893 33 1 3.6108 3.2355 -0.8906 34 1 4.6172 5.3129 2.6065 35 1 10.4830 0.5166 -3.2823 36 1 11.9957 1.1804 -3.9447 37 1 11.7681 1.0710 -2.1825 38 1 9.5240 3.9163 -4.4570 39 1 10.6856 2.8425 -5.2726 40 1 9.1726 2.1782 -4.6104 41 1 12.2615 3.5108 -1.9669 42 1 12.4891 3.6207 -3.7291 43 1 11.3278 4.6946 -2.9132 44 1 11.0484 2.9013 -0.3665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871338255.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = -85.689027 kcal Electronic energy + Delta-G solvation = -27714.121769 eV Core-core repulsion = 23758.530437 eV Total energy + Delta-G solvation = -3955.591332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.11675 -39.68660 -38.54418 -36.24905 -35.63169 -34.98841 -32.32528 -31.04825 -29.31465 -27.70100 -27.13701 -27.07481 -25.56130 -25.23211 -23.44083 -21.51980 -20.18011 -19.43488 -18.32512 -17.81070 -17.25397 -16.38704 -16.30499 -16.23359 -15.85547 -15.13699 -14.74459 -14.54267 -14.50056 -13.88278 -13.71619 -13.60081 -13.42376 -12.88797 -12.78310 -12.63344 -12.29233 -12.14273 -11.98195 -11.90643 -11.86773 -11.81324 -11.46760 -11.35768 -11.24933 -11.10937 -10.71483 -10.64537 -10.62187 -10.58483 -10.24674 -10.14894 -10.02913 -9.45446 -9.12195 -8.78651 -8.62856 -7.92123 -7.71870 -6.71888 -4.62253 1.15396 2.21521 2.61109 2.68686 2.95753 2.98009 3.03427 3.04402 3.20116 3.78782 4.17602 4.23751 4.66428 4.89247 5.05155 5.20324 5.21759 5.23069 5.27930 5.48673 5.59398 5.62709 5.70917 5.73173 5.78585 5.80261 5.90326 5.95912 6.02199 6.08669 6.12726 6.17796 6.22191 6.35282 6.50225 6.66197 6.67502 6.73669 6.83142 6.96203 7.21915 7.63626 7.93817 8.12398 8.41092 8.66095 9.12498 9.55449 10.27630 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011445 B = 0.003875 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.971732 B = 7223.522135 C = 8999.641786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.127 4.127 6 C 0.134 3.866 7 N -0.428 5.428 8 C -0.358 4.358 9 H 0.099 0.901 10 C 0.068 3.932 11 N -0.833 5.833 12 Si 0.908 3.092 13 H -0.259 1.259 14 H -0.276 1.276 15 H -0.263 1.263 16 C 0.551 3.449 17 O -0.564 6.564 18 C 0.026 3.974 19 N -0.424 5.424 20 C 0.059 3.941 21 C 0.004 3.996 22 C -0.134 4.134 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.353 4.353 26 S 0.255 5.745 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.282 0.718 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.383 -6.153 -0.130 8.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.392 6.392 5 C -0.166 4.166 6 C 0.011 3.989 7 N -0.148 5.148 8 C -0.492 4.492 9 H 0.116 0.884 10 C -0.145 4.145 11 N -0.465 5.465 12 Si 0.731 3.269 13 H -0.184 1.184 14 H -0.201 1.201 15 H -0.188 1.188 16 C 0.337 3.663 17 O -0.446 6.446 18 C -0.249 4.249 19 N -0.140 5.140 20 C -0.079 4.079 21 C 0.001 3.999 22 C -0.191 4.191 23 C -0.185 4.185 24 C -0.193 4.193 25 C -0.493 4.493 26 S 0.518 5.482 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.133 0.867 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.260 -5.615 0.015 7.049 hybrid contribution 0.918 0.067 0.259 0.956 sum 5.179 -5.549 0.274 7.595 Atomic orbital electron populations 1.23176 0.77258 1.03078 1.02373 1.86533 1.22815 1.34318 1.84613 1.23983 0.92281 0.80939 0.71786 1.90661 1.67259 1.36203 1.45036 1.21905 0.86123 1.03048 1.05494 1.21215 0.80994 0.91143 1.05582 1.43001 1.04743 1.63152 1.03903 1.19265 1.15221 1.22179 0.92524 0.88409 1.25645 0.95102 0.93555 1.00231 1.69718 1.27185 1.13466 1.36118 0.86257 0.80396 0.79147 0.81058 1.18384 1.20091 1.18781 1.17145 0.83469 0.80805 0.84867 1.90709 1.67952 1.54410 1.31579 1.27304 0.99045 1.07950 0.90574 1.66526 1.03099 1.13802 1.30535 1.19839 0.90226 1.04559 0.93327 1.19098 0.92327 0.95688 0.92763 1.21842 1.00304 0.95642 1.01350 1.21681 0.99766 1.02762 0.94288 1.21881 0.97432 0.98684 1.01310 1.27443 1.08506 1.12558 1.00814 1.85216 0.91649 1.61070 1.10280 0.88595 0.92131 0.92129 0.88332 0.87432 0.86696 0.90955 0.90725 0.92492 0.92520 0.92783 0.92619 0.93465 0.91676 0.92669 0.92462 0.92574 0.82320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.72 10.56 -39.24 -0.41 -6.13 16 3 C 0.47 8.56 7.96 36.00 0.29 8.84 16 4 O -0.50 -10.53 15.73 -18.76 -0.30 -10.82 16 5 C -0.13 -2.37 6.13 -27.89 -0.17 -2.55 16 6 C 0.13 3.03 4.29 -4.04 -0.02 3.02 16 7 N -0.43 -10.09 2.44 -116.17 -0.28 -10.37 16 8 C -0.36 -8.04 6.88 -15.03 -0.10 -8.15 16 9 H 0.10 2.08 5.30 -31.63 -0.17 1.91 16 10 C 0.07 1.52 5.21 -17.45 -0.09 1.43 16 11 N -0.83 -20.11 11.45 55.50 0.64 -19.47 16 12 Si 0.91 17.10 29.56 -169.99 -5.03 12.08 16 13 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 14 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 15 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 16 C 0.55 13.67 7.62 -12.68 -0.10 13.58 16 17 O -0.56 -15.36 16.63 5.21 0.09 -15.28 16 18 C 0.03 0.59 7.30 -14.47 -0.11 0.49 16 19 N -0.42 -9.21 9.53 -7.72 -0.07 -9.28 16 20 C 0.06 1.07 5.38 -84.48 -0.45 0.62 16 21 C 0.00 0.06 0.90 -155.66 -0.14 -0.08 16 22 C -0.13 -1.69 8.42 37.16 0.31 -1.37 16 23 C -0.13 -1.90 7.89 37.16 0.29 -1.61 16 24 C -0.14 -1.66 8.12 37.16 0.30 -1.36 16 25 C -0.35 -5.96 10.10 29.32 0.30 -5.66 16 26 S 0.26 4.83 18.51 -107.50 -1.99 2.84 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 31 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 32 H 0.12 2.77 5.82 -51.93 -0.30 2.47 16 33 H 0.07 1.77 7.33 -51.93 -0.38 1.39 16 34 H 0.28 6.42 8.31 -40.82 -0.34 6.08 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 1.08 7.95 -51.93 -0.41 0.66 16 41 H 0.05 0.63 7.07 -51.92 -0.37 0.26 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.16 2.21 7.23 -52.48 -0.38 1.84 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -28.93 379.20 -6.48 -35.42 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.22 Total: 6.65 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 1.38 Total: 8.67 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.28 Total: -39.12 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.62 Total: -32.24 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.08 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.99 Total: 2.84 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.93 -6.48 -35.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871338255.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.272 kcal (2) G-P(sol) polarization free energy of solvation -28.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds