Wall clock time and date at job start Sat Apr 11 2020 05:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34223 * 117.00397 * 2 1 4 4 O 1.20834 * 119.99764 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00393 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47181 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.47500 * 179.97438 * 6 5 3 8 8 C 1.36764 * 120.00426 * 270.00559 * 7 6 5 9 9 H 1.08000 * 120.00084 * 130.83646 * 8 7 6 10 10 C 1.39094 * 119.99567 * 310.84050 * 8 7 6 11 11 N 1.31329 * 120.00289 * 353.40967 * 10 8 7 12 12 Si 1.86810 * 119.99669 * 173.41255 * 10 8 7 13 13 H 1.48494 * 109.47007 * 60.00013 * 12 10 8 14 14 H 1.48499 * 109.47022 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47122 * 299.99835 * 12 10 8 16 16 C 1.34778 * 119.99814 * 89.99747 * 7 6 5 17 17 O 1.21675 * 119.99862 * 3.79978 * 16 7 6 18 18 C 1.47069 * 120.00078 * 183.79734 * 16 7 6 19 19 N 1.30650 * 125.54422 * 173.39542 * 18 16 7 20 20 C 1.30723 * 115.88317 * 180.17737 * 19 18 16 21 21 C 1.50694 * 122.10745 * 179.75889 * 20 19 18 22 22 C 1.53002 * 109.47403 * 254.71785 * 21 20 19 23 23 C 1.53006 * 109.47022 * 14.71825 * 21 20 19 24 24 C 1.52999 * 109.47006 * 134.71436 * 21 20 19 25 25 C 1.34238 * 115.78395 * 359.49990 * 20 19 18 26 26 S 1.71065 * 109.11038 * 0.26464 * 25 20 19 27 27 H 1.09003 * 109.47554 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47378 * 300.00180 * 1 2 3 29 29 H 1.09004 * 109.47149 * 60.00640 * 1 2 3 30 30 H 1.08997 * 109.46900 * 59.99814 * 5 3 2 31 31 H 1.09006 * 109.47117 * 299.99646 * 5 3 2 32 32 H 1.09001 * 109.47472 * 59.99982 * 6 5 3 33 33 H 1.08999 * 109.47483 * 299.99912 * 6 5 3 34 34 H 0.97008 * 120.00209 * 185.00430 * 11 10 8 35 35 H 1.08998 * 109.46742 * 60.00102 * 22 21 20 36 36 H 1.09001 * 109.46689 * 179.97438 * 22 21 20 37 37 H 1.08996 * 109.46975 * 300.00133 * 22 21 20 38 38 H 1.09000 * 109.47076 * 59.99821 * 23 21 20 39 39 H 1.09001 * 109.46886 * 179.97438 * 23 21 20 40 40 H 1.08995 * 109.46770 * 299.99725 * 23 21 20 41 41 H 1.09009 * 109.46813 * 60.00530 * 24 21 20 42 42 H 1.09001 * 109.47321 * 180.02562 * 24 21 20 43 43 H 1.09000 * 109.47375 * 300.00352 * 24 21 20 44 44 H 1.08008 * 125.44160 * 180.27189 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7419 -0.0002 7 7 5.4631 2.8187 0.0010 8 6 6.1451 2.8553 1.1859 9 1 6.9806 2.1907 1.3489 10 6 5.7625 3.7486 2.1811 11 7 4.8329 4.6439 1.9380 12 14 6.5710 3.6747 3.8636 13 1 8.0318 3.9005 3.7211 14 1 5.9912 4.7257 4.7379 15 1 6.3331 2.3397 4.4689 16 6 6.1371 2.8530 -1.1657 17 8 5.5287 2.8901 -2.2188 18 6 7.6077 2.8457 -1.1659 19 7 8.3666 2.7538 -2.2254 20 6 9.6554 2.7620 -2.0067 21 6 10.6585 2.6580 -3.1264 22 6 11.2704 1.2557 -3.1344 23 6 9.9599 2.9173 -4.4627 24 6 11.7637 3.6955 -2.9190 25 6 10.0290 2.8743 -0.7222 26 16 8.6323 2.9678 0.2611 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 3.9564 0.7804 -0.8891 31 1 3.9557 0.7809 0.8909 32 1 3.6101 3.2367 0.8893 33 1 3.6108 3.2355 -0.8906 34 1 4.6172 5.3129 2.6065 35 1 10.4830 0.5166 -3.2823 36 1 11.9957 1.1804 -3.9447 37 1 11.7681 1.0710 -2.1825 38 1 9.5240 3.9163 -4.4570 39 1 10.6856 2.8425 -5.2726 40 1 9.1726 2.1782 -4.6104 41 1 12.2615 3.5108 -1.9669 42 1 12.4891 3.6207 -3.7291 43 1 11.3278 4.6946 -2.9132 44 1 11.0484 2.9013 -0.3665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871338255.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:15 Heat of formation + Delta-G solvation = -102.394237 kcal Electronic energy + Delta-G solvation = -27714.846161 eV Core-core repulsion = 23758.530437 eV Total energy + Delta-G solvation = -3956.315724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.59532 -41.17716 -40.26547 -37.68292 -37.07250 -36.62859 -34.06065 -32.74536 -30.76668 -28.91671 -28.28894 -28.08088 -27.27032 -26.73752 -24.98704 -22.97275 -21.67196 -21.15414 -19.81883 -19.34110 -18.68948 -18.01491 -17.77885 -17.65403 -17.41349 -16.65180 -16.35903 -16.09519 -15.97095 -15.28741 -15.11192 -14.86721 -14.69330 -14.38113 -14.19070 -14.12518 -13.80623 -13.70199 -13.39166 -13.17295 -13.00044 -12.97422 -12.89865 -12.78759 -12.53118 -12.49888 -12.14207 -12.01257 -11.82757 -11.80220 -11.73625 -11.66144 -11.50838 -11.15055 -10.80826 -10.33885 -10.32854 -9.55308 -9.40315 -8.44520 -6.42614 -0.42489 0.64541 1.12230 1.18874 1.46891 1.49628 1.56642 1.59715 1.71853 2.21012 2.49372 2.56539 2.94901 3.57851 3.80259 3.94451 4.03537 4.13166 4.15609 4.26148 4.31594 4.32370 4.42556 4.44598 4.56953 4.59293 4.69149 4.82127 4.85195 4.91499 4.92624 4.99841 5.04377 5.11873 5.18797 5.22250 5.27351 5.39497 5.45687 5.47863 5.52420 5.83972 6.17040 6.68763 6.86075 6.92928 7.31998 7.74457 8.56848 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011445 B = 0.003875 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.971732 B = 7223.522135 C = 8999.641786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.475 3.525 4 O -0.536 6.536 5 C -0.116 4.116 6 C 0.139 3.861 7 N -0.429 5.429 8 C -0.370 4.370 9 H 0.114 0.886 10 C 0.032 3.968 11 N -0.874 5.874 12 Si 0.963 3.037 13 H -0.241 1.241 14 H -0.281 1.281 15 H -0.251 1.251 16 C 0.536 3.464 17 O -0.610 6.610 18 C -0.026 4.026 19 N -0.445 5.445 20 C 0.041 3.959 21 C 0.000 4.000 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.131 4.131 25 C -0.326 4.326 26 S 0.290 5.710 27 H 0.138 0.862 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.126 0.874 32 H 0.099 0.901 33 H 0.039 0.961 34 H 0.282 0.718 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.033 0.967 39 H 0.078 0.922 40 H 0.038 0.962 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.579 -7.614 1.285 11.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.319 3.681 4 O -0.426 6.426 5 C -0.155 4.155 6 C 0.016 3.984 7 N -0.147 5.147 8 C -0.502 4.502 9 H 0.130 0.870 10 C -0.177 4.177 11 N -0.507 5.507 12 Si 0.783 3.217 13 H -0.165 1.165 14 H -0.206 1.206 15 H -0.175 1.175 16 C 0.324 3.676 17 O -0.496 6.496 18 C -0.299 4.299 19 N -0.162 5.162 20 C -0.097 4.097 21 C -0.002 4.002 22 C -0.186 4.186 23 C -0.182 4.182 24 C -0.189 4.189 25 C -0.467 4.467 26 S 0.551 5.449 27 H 0.156 0.844 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.144 0.856 32 H 0.117 0.883 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.061 0.939 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 7.433 -7.114 1.449 10.391 hybrid contribution -0.030 0.495 -0.242 0.552 sum 7.403 -6.620 1.207 10.004 Atomic orbital electron populations 1.23586 0.74719 1.05876 1.02482 1.86502 1.25178 1.32299 1.83829 1.23735 0.91970 0.81314 0.71083 1.90651 1.67822 1.37441 1.46698 1.21672 0.87077 1.00331 1.06421 1.21007 0.80981 0.93389 1.03048 1.43187 1.04967 1.62346 1.04242 1.19651 1.15933 1.22642 0.91936 0.86959 1.26463 0.95184 0.92704 1.03359 1.69849 1.28878 1.14544 1.37401 0.85414 0.80332 0.79444 0.76504 1.16476 1.20592 1.17495 1.17601 0.84874 0.80593 0.84576 1.90645 1.69322 1.56740 1.32910 1.26933 0.98446 1.11725 0.92777 1.66539 1.04837 1.13565 1.31279 1.20479 0.89617 1.04295 0.95288 1.19314 0.92128 0.97959 0.90844 1.21817 1.00202 0.93453 1.03177 1.21651 0.99876 1.00550 0.96149 1.21867 0.96858 0.96862 1.03276 1.27765 1.09451 1.09794 0.99657 1.84747 0.91426 1.60014 1.08763 0.84427 0.91932 0.92236 0.88153 0.85575 0.88280 0.94208 0.90735 0.94366 0.89836 0.91490 0.94790 0.90297 0.94278 0.91079 0.89881 0.93946 0.78237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.36 -11.09 10.56 -51.35 -0.54 -11.63 16 3 C 0.47 17.84 7.96 71.23 0.57 18.40 16 4 O -0.54 -23.33 15.73 21.94 0.35 -22.99 16 5 C -0.12 -4.53 6.13 29.85 0.18 -4.35 16 6 C 0.14 6.71 4.29 86.38 0.37 7.08 16 7 N -0.43 -21.14 2.44 -639.68 -1.56 -22.70 16 8 C -0.37 -16.77 6.88 84.13 0.58 -16.19 16 9 H 0.11 4.68 5.30 -16.17 -0.09 4.59 16 10 C 0.03 1.44 5.21 84.97 0.44 1.88 16 11 N -0.87 -43.54 11.45 21.69 0.25 -43.29 16 12 Si 0.96 33.81 29.56 68.60 2.03 35.83 16 13 H -0.24 -7.74 7.11 99.48 0.71 -7.03 16 14 H -0.28 -10.03 7.11 99.48 0.71 -9.33 16 15 H -0.25 -8.31 7.11 99.48 0.71 -7.61 16 16 C 0.54 28.09 7.62 86.56 0.66 28.75 16 17 O -0.61 -35.73 16.63 -4.27 -0.07 -35.80 16 18 C -0.03 -1.22 7.30 87.19 0.64 -0.58 16 19 N -0.44 -19.72 9.53 -178.35 -1.70 -21.42 16 20 C 0.04 1.44 5.38 41.81 0.22 1.67 16 21 C 0.00 0.00 0.90 -52.93 -0.05 -0.04 16 22 C -0.13 -2.83 8.42 71.98 0.61 -2.22 16 23 C -0.12 -3.64 7.89 71.98 0.57 -3.07 16 24 C -0.13 -2.72 8.12 71.98 0.58 -2.13 16 25 C -0.33 -10.00 10.10 66.91 0.68 -9.32 16 26 S 0.29 10.51 18.51 -56.49 -1.05 9.46 16 27 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.06 1.39 8.13 -2.39 -0.02 1.38 16 29 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 30 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 31 H 0.13 4.40 8.14 -2.38 -0.02 4.38 16 32 H 0.10 5.08 5.82 -2.39 -0.01 5.07 16 33 H 0.04 2.12 7.33 -2.39 -0.02 2.10 16 34 H 0.28 13.26 8.31 -92.70 -0.77 12.49 16 35 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.04 1.31 7.95 -2.39 -0.02 1.30 16 41 H 0.07 1.25 7.07 -2.38 -0.02 1.23 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 44 H 0.20 4.45 7.23 -2.91 -0.02 4.43 16 Total: -1.00 -67.97 379.20 5.89 -62.08 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.94 Total: 28.79 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 7.25 Total: 21.66 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -3.01 Total: -87.41 kcal Atomic # 8 Polarization: -70.15 SS G_CDS: -0.27 Total: -70.42 kcal Atomic # 14 Polarization: 33.81 SS G_CDS: 2.03 Total: 35.83 kcal Atomic # 16 Polarization: 10.51 SS G_CDS: -1.05 Total: 9.46 kcal Total: -67.97 5.89 -62.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871338255.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.316 kcal (2) G-P(sol) polarization free energy of solvation -67.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds